Clone GH28769 Report

Search the DGRC for GH28769

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:287
Well:69
Vector:pOT2
Associated Gene/TranscriptCG8006-RA
Protein status:GH28769.pep: gold
Preliminary Size:1876
Sequenced Size:1754

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8006 2001-01-01 Release 2 assignment
CG8006 2001-11-09 Blastp of sequenced clone
CG8006 2003-01-01 Sim4 clustering to Release 3
CG8006 2008-04-29 Release 5.5 accounting
CG8006 2008-08-15 Release 5.9 accounting
CG8006 2008-12-18 5.12 accounting

Clone Sequence Records

GH28769.complete Sequence

1754 bp (1754 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069238

> GH28769.complete
ATTTTTTGGGAACAAAATCAGTTGATTCCGGTTGAATATGCGAATGTGGC
CATGAAGGATCTAAGCGAGGAGTTACTGGATCGCCATTTCAGGCAGCAGC
TAGCCAGTTACAAGTATGCCGATCAGGCAAGGGCTAAGCAGTCGGATCGC
CCCATCATGGCCAGATGGATAAAGATATTCGAGAAGGCTCCTCTCAGCGA
GAAGTTGGCCCGAAATAGCCTGATGCTGCTCATGCATGGCCACTTGAAGG
ACTTTGGAGTGCTCAAGGAACCGTTCACGGATGTGCGTAACTACAGTAGG
AATCTGAACGTAATTTTGGATGAGTACAGAGGCCAGCCATGTAAGAAGTT
AGCTACTGGCAAATCACCTACACTGCTCAAGAAGTGCTCGACTCAAATTT
TACGACCCAGGAAACTGGAACCCATCAAGGAGGTTTCCGAACAATCGGAA
AATGATCCTACGACCAGTAGTTTTGCCAGCATTGTGACAATAATACGAAA
AACAAATACGCGATCCTCTGACTCGAAGGATAGCCAAGTTTATCCAAGGA
CTGGCTTCGAGTCCCCAAATGGTGCTGATAGTCACACTGTGAAGAAGAGA
GTCGAACTATTGGAGTATGAGCTCTCGAGAAATAAGCAGCATCCATCGAG
CTCCACATTCAATCGGGATGCACCTGACAGCGGAAGAACCCATTCCTCCA
GTTCCTTATCCCAAGAGAAACTCATCAAGATCACCAATGTCATAGATCAG
GTCAACCGCCGATCAAGTGCTGTGAAAAATCTGAGGGATTGCTTTGAGGA
AATGGCCGAACGTTTGAAAAACACAATCGAATCAAAATATAAATCGAAGA
TTCCGCCGCCAAAGCCGCCAAAGAAGATTCATAAGGATGTTCCTGCCGAG
CGAGCCAGTGCCCAATGCCATTCTCCTATTGGCGTTACGGACCCAACTGT
TCAGGGATTGCTGATGCGTAGAGAACAGCTGCGTGTCCAGTGCTTGGCAT
ACTACAACTCGGATGGCACGATGAAGGATGTGATGGACATGCCTGATCTC
TCAATGGATACTATGAAAGCTGAACAGAGAGTCAGAGGGTTCATAGTTGG
TGCCTACAAGGCCTTGGAGCGTCTGAAACGCTGGCGCGGAAAATCCAAAC
GGTTGAGATTTTTCCAAACCTGCTTCCAGAAATTTGGGCTTCGTAATTTT
TGGGAACTACAGGCTCTGGATCGAAGATTCGAGAGGGTGGCGCTCAAGTG
GTATCGCCATAAGGTGATGGCATGTCTACAGAACACCTGGCTTACTTATC
GCAGAAGCATCTTGGCCCAGAAGCTATCGTACGACGAGGACGATCTACAG
CAGATGCGCCACCAGATTGAGCTGCAGGAGGAGTTGCAGCGGGAGCGAAT
GGTCCACCTGGCCAAGATCATGGAACTGTGCAGGAGCAACTGTCACGGGA
TCGTCACGCATAAAGTCCTTAGCAAGATGCTCGATCGCCTGGAGGATGAA
CACGACCAGCTGGCCCGGGATCTCAAATCACTGCTCCGCCAGAAGGACCA
ACTGTTCCAGTAAAGCATCCTGCGAATCCGCAACTTTTCTCGCACCAGAT
TTTTGATATCATTTTGCACCTTTGTGTAAGCCCGTTTACACCGCGAGCTA
CGCTGCTCGTTAATTAATTTAAATACTACGCTTTATTAAATTAAGAACTG
CTGACAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

GH28769.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8006-RA 1740 CG8006-RA 25..1734 1..1710 8550 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8203874..8205582 1..1709 8275 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:34 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8211914..8213623 1..1710 8550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8205014..8206723 1..1710 8550 100 Plus
Blast to na_te.dros performed on 2019-03-15 11:54:40 has no hits.

GH28769.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:55:27 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8203874..8205582 1..1709 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:15 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 1..1512 52..1563 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:01 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 1..1512 52..1563 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:34:31 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 1..1512 52..1563 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:39 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 1..1512 52..1563 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:45:35 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 1..1512 52..1563 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:57 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 25..1733 1..1709 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:01 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 25..1733 1..1709 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:34:31 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 25..1733 1..1709 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:39 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 25..1733 1..1709 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:35 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
CG8006-RA 25..1733 1..1709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:27 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8211914..8213622 1..1709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:27 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8211914..8213622 1..1709 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:27 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8211914..8213622 1..1709 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:34:31 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8205014..8206722 1..1709 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:21 Download gff for GH28769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8205014..8206722 1..1709 100   Plus

GH28769.hyp Sequence

Translation from 0 to 1562

> GH28769.hyp
IFWEQNQLIPVEYANVAMKDLSEELLDRHFRQQLASYKYADQARAKQSDR
PIMARWIKIFEKAPLSEKLARNSLMLLMHGHLKDFGVLKEPFTDVRNYSR
NLNVILDEYRGQPCKKLATGKSPTLLKKCSTQILRPRKLEPIKEVSEQSE
NDPTTSSFASIVTIIRKTNTRSSDSKDSQVYPRTGFESPNGADSHTVKKR
VELLEYELSRNKQHPSSSTFNRDAPDSGRTHSSSSLSQEKLIKITNVIDQ
VNRRSSAVKNLRDCFEEMAERLKNTIESKYKSKIPPPKPPKKIHKDVPAE
RASAQCHSPIGVTDPTVQGLLMRREQLRVQCLAYYNSDGTMKDVMDMPDL
SMDTMKAEQRVRGFIVGAYKALERLKRWRGKSKRLRFFQTCFQKFGLRNF
WELQALDRRFERVALKWYRHKVMACLQNTWLTYRRSILAQKLSYDEDDLQ
QMRHQIELQEELQRERMVHLAKIMELCRSNCHGIVTHKVLSKMLDRLEDE
HDQLARDLKSLLRQKDQLFQ*

GH28769.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8006-PA 503 CG8006-PA 1..503 18..520 2603 100 Plus
CG7366-PA 389 CG7366-PA 1..95 18..111 180 40 Plus

GH28769.pep Sequence

Translation from 51 to 1562

> GH28769.pep
MKDLSEELLDRHFRQQLASYKYADQARAKQSDRPIMARWIKIFEKAPLSE
KLARNSLMLLMHGHLKDFGVLKEPFTDVRNYSRNLNVILDEYRGQPCKKL
ATGKSPTLLKKCSTQILRPRKLEPIKEVSEQSENDPTTSSFASIVTIIRK
TNTRSSDSKDSQVYPRTGFESPNGADSHTVKKRVELLEYELSRNKQHPSS
STFNRDAPDSGRTHSSSSLSQEKLIKITNVIDQVNRRSSAVKNLRDCFEE
MAERLKNTIESKYKSKIPPPKPPKKIHKDVPAERASAQCHSPIGVTDPTV
QGLLMRREQLRVQCLAYYNSDGTMKDVMDMPDLSMDTMKAEQRVRGFIVG
AYKALERLKRWRGKSKRLRFFQTCFQKFGLRNFWELQALDRRFERVALKW
YRHKVMACLQNTWLTYRRSILAQKLSYDEDDLQQMRHQIELQEELQRERM
VHLAKIMELCRSNCHGIVTHKVLSKMLDRLEDEHDQLARDLKSLLRQKDQ
LFQ*

GH28769.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:23:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25103-PA 206 GF25103-PA 1..177 1..138 335 43.5 Plus
Dana\GF24699-PA 402 GF24699-PA 1..93 1..94 178 40.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14288-PA 554 GG14288-PA 1..554 1..503 1765 65.4 Plus
Dere\GG15102-PA 391 GG15102-PA 1..95 1..94 199 42.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15496-PA 403 GH15496-PA 3..97 2..96 265 50.5 Plus
Dgri\GH15980-PA 482 GH15980-PA 1..95 1..95 160 40.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG8006-PA 503 CG8006-PA 1..503 1..503 2603 100 Plus
CG7366-PA 389 CG7366-PA 1..95 1..94 180 40 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16772-PA 573 GI16772-PA 2..98 1..97 269 51.5 Plus
Dmoj\GI16631-PA 475 GI16631-PA 1..94 1..94 186 40.4 Plus
Dmoj\GI16465-PA 1457 GI16465-PA 16..129 5..126 164 32.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:23:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22537-PA 794 GL22537-PA 3..162 2..161 293 40 Plus
Dper\GL22537-PA 794 GL22537-PA 583..779 303..501 248 31.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20761-PA 897 GA20761-PA 3..161 2..161 297 39.6 Plus
Dpse\GA20761-PA 897 GA20761-PA 655..882 270..501 265 30.2 Plus
Dpse\GA20300-PA 588 GA20300-PA 5..103 4..102 165 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25030-PA 213 GM25030-PA 23..213 313..503 910 89 Plus
Dsec\GM24959-PA 385 GM24959-PA 1..95 1..94 186 41.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14063-PA 333 GD14063-PA 65..333 245..503 1080 81.8 Plus
Dsim\GD13009-PA 367 GD13009-PA 1..95 1..94 185 41.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12517-PA 430 GJ12517-PA 1..98 1..98 259 51 Plus
Dvir\GJ12886-PA 491 GJ12886-PA 1..94 1..94 187 42.6 Plus
Dvir\GJ15944-PA 1343 GJ15944-PA 26..114 4..92 178 38.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17183-PA 585 GK17183-PA 3..583 2..500 591 30.1 Plus
Dwil\GK17010-PA 385 GK17010-PA 1..95 1..95 215 47.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20718-PA 560 GE20718-PA 1..560 1..503 1711 62.3 Plus
Dyak\GE21327-PA 387 GE21327-PA 1..138 1..129 201 36 Plus