BDGP Sequence Production Resources |
Search the DGRC for GH28787
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 287 |
Well: | 87 |
Vector: | pOT2 |
Associated Gene/Transcript | lat-RA |
Protein status: | GH28787.pep: gold |
Preliminary Size: | 3262 |
Sequenced Size: | 3276 |
Gene | Date | Evidence |
---|---|---|
CG4088 | 2001-01-01 | Release 2 assignment |
CG4088 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4088 | 2003-02-15 | Blastp of sequenced clone |
lat | 2008-04-29 | Release 5.5 accounting |
lat | 2008-08-15 | Release 5.9 accounting |
CG34315 | 2008-08-15 | Release 5.9 accounting |
lat | 2008-12-18 | 5.12 accounting |
CG34315 | 2008-12-18 | 5.12 accounting |
3276 bp (3276 high quality bases) assembled on 2003-02-15
GenBank Submission: AY060817
> GH28787.complete CAGACATTCCGGAAAAAAGTTCTTACTACAAGAAGGAAAGAAGAAAGTTC GCTCTGATCACTTACCTACTAACCGCGATATTCCTGATCCTTGCGCTGTT GCAATGGGCCACTTTCCGCTTTGTAAATTTTCTAAGGGAATTTTTTACTT CGTACCATTGGTTGAGCTGCCTTTTTTTTTGGAATAGGCCTGATACTCCT CGTACTTTTCATATTTTTCGAGGTACTGCGCTTTAATAAAATGGTAAACT GGTTGTTTGCCTTTCTAATTTTTGAATGCATTGTACTGGGGATTGCACCG CTGGTTGCCCGCCACTACAAGTATCAGTTTCTCTTCAGCTTCCTTATATG GACCGTAGCATTGGCGCTTTTTATTGTCTGTGGTTCCTTTCTTCCGCTGG ATCTTACTTTGGATGTTGTGGTGCTATTTGTGCTTGCAGTGGTTTCCATT ATCGGCGCCATATACTTCGTGATGCTCTACATCGTGGCTAATGTCGCATA CTCGTTTATAATCGCCCGTTGCTTTATAGTGATCAGCATCTTGATGTTTG TCATGTATCACGCGCAGATTATAAACGGTGGAAGGTTCGCCGAGATGCGC ACGAAGGACTACTTCCTGGCAGCCATCATACTGTTCCTCGATTTCCTGCT CCTCTATCTTTTCTCATTCCAAGTGGCCCCAAAATGGTCGGATCGTTGCG ATGGCGAACGTTCAAAAAACTTGGTGCTGTTCACAGAAACTACGACGAAT TCGTATCCACCAAAATGGTGGCGTACGAGCACGAAGGATACCCCCTAAAG TCGTTAGCCAACACTGCCGCCCGTTTGGCGCCAAACACAACAGCCAGCTG ATTTCATTTCGCGTTCCTACCGGTGAAGAAACTTTAATTGGCACAGAGCT GACCTAAACAAATAAATAAATAAACGCAACCCGGCGACTTAAAGACTCCA CGACATCGGGCCGCAGTGCAAAGCCAGCGATGGATCCCACCATTTCAGTG TCCAAGGGCTGTTTTGTCTACAAAAATGGCGCTACGAGAGCAGGGAAAAA GGCGGCCAGCAAACGGAAGCGTCCTGCCGCAGAATCCAGTAGTCTTCTTG GCAAAGAGGTAGTGCAGCAGCCCTTCTATGAGGAATATCGCAAGGCCTGG AATCAGATAAACGATCACATTGCCGACCTGCAGCACCGCAGCTATGCCCG CACTCTGGAGCAACTGGTGGACTTTGTGGTGGGGCAGGCAGAGCGCGACA CCCCGGACGAGGTGCTGCCCACCGCCGCCTTGCTAACGGGCATTAATCAG CCGGATCATCTCAGCCAGTTCACGGCACTTACCCAGCGACTCCATGCCCA ACGTGCTGCAATGGTATGTGTGCTGCAGTCCAGGGATTGCGCCACTCTCA AGGCGGCCGTTGAGACATTGGTTTTCGGGCTCGTAGAAGATAATGCAGAA GTGGAGCAAATGGAAGACGAGGACGAGGACGAGGATGGTGCCGAACGGGA TCGCAAGCGGCTACGTCGCTCGCAGTGCACCATGAAGCAGTTGAAGTCTT GGTACACGAACAATTTTGACTCGGAACAGAAGCGCCGCCAGCTGGTCGTC ATCCTTCCCGACTTTGAGTGCTTTAACGCAAGCGTGCTGCAGGATCTTAT TCTAATTTTGAGCGCTCACTGCGGCTCGCTTCCATTCGTCCTGGTCCTGG GAGTGGCCACGGCCATGACAGCTGTCCATGGGACACTACCATACCACGTC AGCAGCAAGATTCGTCTAAGGGTGTTCCAGACTCAAGCTGCTCCCACGGG CCTTAATGAGGTGCTGGATAAAGTTCTGCTGTCGCCCAAGTACGCTTTCC ACCTGTCGGGAAAGACATTCAAGTTCCTGACGCACATCTTCCTATACTAC GACTTCTCCATCCACGGCTTTATTCAGGGCTTCAAGTACTGCCTGATGGA ACACTTCTTTGGTGGGAATGCCTTTGCTCTTTGCACAGACTACAGCAAAG CATTGGGACGCATAAAGCAGCTGACCCACGAGGATATGGAAACCATCAGA AGGCTCCCATCGTTTCGTCCGTACGTCGAGCAGATCAATGATTGCAAACG CATCATAGCCGTGCTCACGGACGATGACTACCTAAAGAAGAAACTGCCGC AGTTGCTGCGCGACTGCCTGCTCCACTTCCTGCTTTTCCGCTGCTCTCTG GAGTTCCTTACAGAGCTGGTTGGTGATTTGCCGCGCTGTCCGCTGGGAAA GCTACGCCGGGAACTGTACGTCAACTGTCTTAATCGTGCGATCATTTCGA CGCCGGAGTACAAGGAGTGCCTGCAGATGCTAAGCTTTCTGTCCAAGGAC GAATTTGTTGCTAAAGTGAATCGAGCCCTGGAAAGAACCGAACAGTTCCT GGTTGAAGAAATTGCTCCGCTGGAATTGGGCGAGGCCTGCACTGCTGTGC TGAGACCTAAGTTAGAAGCTATACGCCTTGCAGTGGACGAAGTGGTCAAG GCCACCATGGCGACAATTACAACGACATCGCCCAATGAAACCCGCCAGGC GACTGACCATTTGACTCCGGTGGCCTCGCGTCAAGAATTGAAAGATCAGC TCCTACAGCGTAGCAAGGAGGACAAGATGCGGCATCAGCTGAACACGCCC ACCACCCAATTCGGACGAGCTCTACAAAAGACTCTGCAGCTTATCGAAAC GCAGATTGTACAGGATCATCTCCGTGCGCTGCAGGATGCACCACCTATTC ACGAACTTTTTGTGTTCAGCGACATTGCTACCGTGCGGCGAAACATAATT GGTGCTCCGCGGGCTGCACTGCACACTGCCCTGAATAATCCACATTTTTA CATGCAGTGCAAGTGCTGCGAGCTACAAGATCAATCACTGCTGGTTGGCA CACTGCCCGATCTCTCCGTGGTTTACAAGCTGCACCTGGAGTGCGGTCGC ATGATCAACCTTTTCGACTGGCTGCAGGCCTTTCGATCTGTTGTGAGCGA CAGCGACCACGAGGAAGTGGCCCAGGAACAAATCGATCCCCAGATCCAGG CCCGATTCACGCGTGCCGTAGCCGAGTTGCAGTTTCTGGGGTACATTAAG ATGTCGAAGCGCAAGACGGATCATGCCACTCGATTAACCTGGTAGCTCGC TCGGGCTATGAATAACCAAAATCCCTTAGGTATTTTTATCTTTTCTATTT ATTTATATTGGGGCAAATTTCATGTGTGGGACGTTATGAATAAATAAAAC ATCAATCGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 9090339..9091579 | 3049..1809 | 6175 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 9091635..9092442 | 1812..1005 | 3980 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 9092802..9093043 | 787..546 | 1195 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 9092503..9092727 | 1007..787 | 1030 | 98.2 | Minus |
chr2R | 21145070 | chr2R | 9090069..9090274 | 3258..3049 | 955 | 98.1 | Minus |
chr2R | 21145070 | chr2R | 9093102..9093252 | 546..396 | 755 | 100 | Minus |
chr2R | 21145070 | chr2R | 9093506..9093650 | 270..125 | 680 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 9093324..9093449 | 396..271 | 630 | 100 | Minus |
chr2R | 21145070 | chr2R | 9093707..9093830 | 124..1 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 13203017..13204257 | 3049..1809 | 6205 | 100 | Minus |
2R | 25286936 | 2R | 13204313..13205120 | 1812..1005 | 4040 | 100 | Minus |
2R | 25286936 | 2R | 13205476..13205717 | 787..546 | 1210 | 100 | Minus |
2R | 25286936 | 2R | 13205181..13205401 | 1007..787 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 13202742..13202952 | 3259..3049 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 13205776..13205926 | 546..396 | 755 | 100 | Minus |
2R | 25286936 | 2R | 13206180..13206324 | 270..125 | 680 | 99.3 | Minus |
2R | 25286936 | 2R | 13205998..13206123 | 396..271 | 630 | 100 | Minus |
2R | 25286936 | 2R | 13206381..13206504 | 124..1 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 13204216..13205456 | 3049..1809 | 6205 | 100 | Minus |
2R | 25260384 | 2R | 13205512..13206319 | 1812..1005 | 4040 | 100 | Minus |
2R | 25260384 | 2R | 13206675..13206916 | 787..546 | 1210 | 100 | Minus |
2R | 25260384 | 2R | 13206380..13206600 | 1007..787 | 1105 | 100 | Minus |
2R | 25260384 | 2R | 13203941..13204151 | 3259..3049 | 1055 | 100 | Minus |
2R | 25260384 | 2R | 13206975..13207125 | 546..396 | 755 | 100 | Minus |
2R | 25260384 | 2R | 13207379..13207523 | 270..125 | 690 | 99.3 | Minus |
2R | 25260384 | 2R | 13207197..13207322 | 396..271 | 630 | 100 | Minus |
2R | 25260384 | 2R | 13207580..13207703 | 124..1 | 620 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 9090069..9090274 | 3049..3258 | 98 | <- | Minus |
chr2R | 9090340..9091577 | 1811..3048 | 99 | <- | Minus |
chr2R | 9091637..9092440 | 1007..1810 | 99 | <- | Minus |
chr2R | 9092504..9092726 | 788..1006 | 98 | <- | Minus |
chr2R | 9092802..9093042 | 547..787 | 99 | <- | Minus |
chr2R | 9093102..9093251 | 397..546 | 100 | <- | Minus |
chr2R | 9093324..9093449 | 271..396 | 100 | <- | Minus |
chr2R | 9093506..9093650 | 125..270 | 99 | <- | Minus |
chr2R | 9093707..9093830 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lat-RA | 1..2166 | 980..3145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lat-RA | 1..2166 | 980..3145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lat-RA | 1..2166 | 980..3145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lat-RA | 1..2166 | 980..3145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lat-RA | 1..2166 | 980..3145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34315-RB | 19..3275 | 1..3258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34315-RB | 19..3275 | 1..3258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lat-RA | 19..3275 | 1..3258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34315-RA | 19..3275 | 1..3258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
lat-RA | 44..3300 | 1..3258 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13202743..13202952 | 3049..3258 | 100 | <- | Minus |
2R | 13203018..13204255 | 1811..3048 | 100 | <- | Minus |
2R | 13204315..13205118 | 1007..1810 | 100 | <- | Minus |
2R | 13205182..13205400 | 788..1006 | 100 | <- | Minus |
2R | 13205476..13205716 | 547..787 | 100 | <- | Minus |
2R | 13205776..13205925 | 397..546 | 100 | <- | Minus |
2R | 13205998..13206123 | 271..396 | 100 | <- | Minus |
2R | 13206180..13206324 | 125..270 | 99 | <- | Minus |
2R | 13206381..13206504 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13202743..13202952 | 3049..3258 | 100 | <- | Minus |
2R | 13203018..13204255 | 1811..3048 | 100 | <- | Minus |
2R | 13204315..13205118 | 1007..1810 | 100 | <- | Minus |
2R | 13205182..13205400 | 788..1006 | 100 | <- | Minus |
2R | 13205476..13205716 | 547..787 | 100 | <- | Minus |
2R | 13205776..13205925 | 397..546 | 100 | <- | Minus |
2R | 13205998..13206123 | 271..396 | 100 | <- | Minus |
2R | 13206180..13206324 | 125..270 | 99 | <- | Minus |
2R | 13206381..13206504 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13202743..13202952 | 3049..3258 | 100 | <- | Minus |
2R | 13203018..13204255 | 1811..3048 | 100 | <- | Minus |
2R | 13204315..13205118 | 1007..1810 | 100 | <- | Minus |
2R | 13205182..13205400 | 788..1006 | 100 | <- | Minus |
2R | 13205476..13205716 | 547..787 | 100 | <- | Minus |
2R | 13205776..13205925 | 397..546 | 100 | <- | Minus |
2R | 13205998..13206123 | 271..396 | 100 | <- | Minus |
2R | 13206180..13206324 | 125..270 | 99 | <- | Minus |
2R | 13206381..13206504 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 9090248..9090457 | 3049..3258 | 100 | <- | Minus |
arm_2R | 9090523..9091760 | 1811..3048 | 100 | <- | Minus |
arm_2R | 9091820..9092623 | 1007..1810 | 100 | <- | Minus |
arm_2R | 9092687..9092905 | 788..1006 | 100 | <- | Minus |
arm_2R | 9092981..9093221 | 547..787 | 100 | <- | Minus |
arm_2R | 9093281..9093430 | 397..546 | 100 | <- | Minus |
arm_2R | 9093503..9093628 | 271..396 | 100 | <- | Minus |
arm_2R | 9093685..9093829 | 125..270 | 99 | <- | Minus |
arm_2R | 9093886..9094009 | 1..124 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 13206675..13206915 | 547..787 | 100 | <- | Minus |
2R | 13206381..13206599 | 788..1006 | 100 | <- | Minus |
2R | 13203942..13204151 | 3049..3258 | 100 | <- | Minus |
2R | 13204217..13205454 | 1811..3048 | 100 | <- | Minus |
2R | 13205514..13206317 | 1007..1810 | 100 | <- | Minus |
2R | 13206975..13207124 | 397..546 | 100 | <- | Minus |
2R | 13207197..13207322 | 271..396 | 100 | <- | Minus |
2R | 13207379..13207523 | 125..270 | 99 | <- | Minus |
2R | 13207580..13207703 | 1..124 | 100 | Minus |
Translation from 979 to 3144
> GH28787.pep MDPTISVSKGCFVYKNGATRAGKKAASKRKRPAAESSSLLGKEVVQQPFY EEYRKAWNQINDHIADLQHRSYARTLEQLVDFVVGQAERDTPDEVLPTAA LLTGINQPDHLSQFTALTQRLHAQRAAMVCVLQSRDCATLKAAVETLVFG LVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQCTMKQLKSWYTNNFDSEQ KRRQLVVILPDFECFNASVLQDLILILSAHCGSLPFVLVLGVATAMTAVH GTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAFHLSGKTFKFL THIFLYYDFSIHGFIQGFKYCLMEHFFGGNAFALCTDYSKALGRIKQLTH EDMETIRRLPSFRPYVEQINDCKRIIAVLTDDDYLKKKLPQLLRDCLLHF LLFRCSLEFLTELVGDLPRCPLGKLRRELYVNCLNRAIISTPEYKECLQM LSFLSKDEFVAKVNRALERTEQFLVEEIAPLELGEACTAVLRPKLEAIRL AVDEVVKATMATITTTSPNETRQATDHLTPVASRQELKDQLLQRSKEDKM RHQLNTPTTQFGRALQKTLQLIETQIVQDHLRALQDAPPIHELFVFSDIA TVRRNIIGAPRAALHTALNNPHFYMQCKCCELQDQSLLVGTLPDLSVVYK LHLECGRMINLFDWLQAFRSVVSDSDHEEVAQEQIDPQIQARFTRAVAEL QFLGYIKMSKRKTDHATRLTW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12966-PA | 719 | GF12966-PA | 1..719 | 1..721 | 2977 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22519-PA | 718 | GG22519-PA | 1..718 | 1..721 | 3651 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24942-PA | 721 | GH24942-PA | 1..721 | 1..721 | 2818 | 73.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orc3-PB | 721 | CG4088-PB | 1..721 | 1..721 | 3721 | 100 | Plus |
Orc3-PA | 721 | CG4088-PA | 1..721 | 1..721 | 3721 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18396-PA | 721 | GI18396-PA | 1..721 | 1..721 | 2791 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17672-PA | 713 | GL17672-PA | 1..713 | 1..721 | 2957 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17948-PA | 713 | GA17948-PA | 1..713 | 1..721 | 2946 | 77.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20305-PA | 721 | GM20305-PA | 1..721 | 1..721 | 3786 | 97.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25785-PA | 721 | GD25785-PA | 1..721 | 1..721 | 3807 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21473-PA | 717 | GJ21473-PA | 1..717 | 1..721 | 2848 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK17892-PA | 717 | GK17892-PA | 1..717 | 1..721 | 2760 | 72.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13391-PA | 719 | GE13391-PA | 1..719 | 1..721 | 3650 | 94 | Plus |
Translation from 979 to 3144
> GH28787.hyp MDPTISVSKGCFVYKNGATRAGKKAASKRKRPAAESSSLLGKEVVQQPFY EEYRKAWNQINDHIADLQHRSYARTLEQLVDFVVGQAERDTPDEVLPTAA LLTGINQPDHLSQFTALTQRLHAQRAAMVCVLQSRDCATLKAAVETLVFG LVEDNAEVEQMEDEDEDEDGAERDRKRLRRSQCTMKQLKSWYTNNFDSEQ KRRQLVVILPDFECFNASVLQDLILILSAHCGSLPFVLVLGVATAMTAVH GTLPYHVSSKIRLRVFQTQAAPTGLNEVLDKVLLSPKYAFHLSGKTFKFL THIFLYYDFSIHGFIQGFKYCLMEHFFGGNAFALCTDYSKALGRIKQLTH EDMETIRRLPSFRPYVEQINDCKRIIAVLTDDDYLKKKLPQLLRDCLLHF LLFRCSLEFLTELVGDLPRCPLGKLRRELYVNCLNRAIISTPEYKECLQM LSFLSKDEFVAKVNRALERTEQFLVEEIAPLELGEACTAVLRPKLEAIRL AVDEVVKATMATITTTSPNETRQATDHLTPVASRQELKDQLLQRSKEDKM RHQLNTPTTQFGRALQKTLQLIETQIVQDHLRALQDAPPIHELFVFSDIA TVRRNIIGAPRAALHTALNNPHFYMQCKCCELQDQSLLVGTLPDLSVVYK LHLECGRMINLFDWLQAFRSVVSDSDHEEVAQEQIDPQIQARFTRAVAEL QFLGYIKMSKRKTDHATRLTW*