Clone GH28815 Report

Search the DGRC for GH28815

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:288
Well:15
Vector:pOT2
Associated Gene/TranscriptCG33722-RB
Protein status:GH28815.pep: gold
Sequenced Size:1565

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31188 2004-03-31 Blastp of sequenced clone
CG33722 2008-04-29 Release 5.5 accounting
CG33722 2008-08-15 Release 5.9 accounting
CG33722 2008-12-18 5.12 accounting

Clone Sequence Records

GH28815.complete Sequence

1565 bp (1565 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012497

> GH28815.complete
CTTTTTTGCCTCTACCTCGTAGCTGCCATACAGATACGTATCCTTGTAGG
GAAGTGGCCAATCCGATGGACAAGCGCGTAACAGTCCTGCTGCCCAATGG
TCGGCGGCAGAATGTGAACGTGACGGCGAACATGACGCTGTTGGAGATTC
TGGAGACGGCCTGCTTCAAGCACGGCTACGATGCGGAGGAGCACTGCCTC
AAGTTTCACAACAAGGTGGTCGGATTGACGCAACAGTTCCGTTTTAGTGG
CCTGCCTAACAACTGTGTCCTGGAGATGGAGCAAACAGAAAAGCGGCGCA
CACTGAGTAACGTTCTTGTCTGCGTCCAATTGAACGACGGTTCCCGCCAG
CAAGGGGACTTCTCGCCCAACGACACCATATGGCTGGTGGTCGAGAAGCT
TTGCGAAACACATGTAAAGGCTTACGAAAGCCCCGTCATCATCTACATGC
GCAGCGAGGTCATAGGACATGAGCAGATGCGACAGACCACTCTTAAGTCC
CTAGGAATCCTCGAGGGTCGTGCCATGATGCGTCTTATCGACAAAAAACC
CGAGGACCTTAAGACCCAGGCAAATGTGTATAAAGCTCCCGCTGTCAAGC
CTCGGGTGGACAATGACGACCAGCCCAGTACCTCCCGCTCTGCAATGGCA
GCTGGTGGCAGCGGAGGAGGAGGTGGATTTGCTCTTACCAGCAACATGAT
CAAGAATTTGAAACGCACGGCTCCTGAAGAAAAGGCCAGCGGTAGCGAAC
CAGCCAAGCCCTTAGGGGAATCCAATCAAGAGCAGCAGCCTCAGCCAGAA
CCACCTAAATATGACTGGGGCAATGGTTCCGGATACTTAATGAACCACCC
TCCCGAGCAGAAGCAGGCAGAAAACGAAGTCGAAGAGAATCCAGGCAGGG
CTCCACCAGTGGTGAAAATAATTGGGCCACGCCAGGCTGTACTCTTTTCC
TTGGACGAATCCAAGAAAAATGCGAATGACCTGCCGGACTCATTTTTCGA
CTTGACCGTCAACGATTTGAAGATGGTACTCCGTGATTTAAAGCGTACGT
CGAGCGGAGATGACGACGCTCCCTTGCTGACAGCAAAGCTAAGGGAATTG
GAGCGCCAAAAGGCCATGCTGGCTAAGCTTAACCAGTACAAGGACTGTGT
GCTGCGCATTCAGTTTCCCGATCGCTTCGTGCTCCAGGGCATGTTTAAGC
CGCACGAGCCCCTTTCCAAGGTGGAGGATTTTGTTCGGGAGTTTTTGGTT
CAGCCAGGTGAGCAATTCCATCTCTTCACCATTCCACCGAAGAAGGTGCT
GCCCTCCGGTGAGACGCTCCTGGAGCTGAATTTTGTTCCAAATGCCATCG
TGCATTTTGGCTTTATCAAGGACTCGCTCAATGCGGTGAGCAATCGATTC
GTGAAGGAGGAGTACGTGGATCAGTTGACCTCCGAGGAGGGAGCGCACTA
CGCAGTGCAAAAGTACCGCCTTACCCGTGCAACGGCCTCAGGGTCTAGTT
AATAGATACATACATACAGTCTGTGTGATATTAAATGAATCCGCTTTAAA
AAAAAAAAAAAAAAA

GH28815.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG33722-RB 1547 CG33722-RB 1..1547 1..1547 7735 100 Plus
CG18749-RB 3405 CG18749-RB 87..1587 48..1548 7505 100 Plus
CG33722-RC 3400 CG33722-RC 82..1582 48..1548 7505 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4070159..4071705 1..1547 7735 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8244148..8245695 1..1548 7740 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7984979..7986526 1..1548 7740 100 Plus
Blast to na_te.dros performed 2019-03-16 15:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 669..714 693..647 115 74.5 Minus

GH28815.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:19:50 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4070159..4071705 1..1547 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:21 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1437 66..1502 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:38:40 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1437 66..1502 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:42:47 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RC 1..1437 66..1502 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:22:25 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1437 66..1502 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:43:58 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1437 66..1502 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:46:43 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1547 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:38:40 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1547 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:42:47 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1547 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:22:25 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1547 1..1547 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:43:58 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
CG33722-RB 1..1547 1..1547 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:19:50 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8244148..8245694 1..1547 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:19:50 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8244148..8245694 1..1547 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:19:50 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8244148..8245694 1..1547 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:42:47 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4069870..4071416 1..1547 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:51 Download gff for GH28815.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7984979..7986525 1..1547 100   Plus

GH28815.hyp Sequence

Translation from 2 to 1501

> GH28815.hyp
FLPLPRSCHTDTYPCREVANPMDKRVTVLLPNGRRQNVNVTANMTLLEIL
ETACFKHGYDAEEHCLKFHNKVVGLTQQFRFSGLPNNCVLEMEQTEKRRT
LSNVLVCVQLNDGSRQQGDFSPNDTIWLVVEKLCETHVKAYESPVIIYMR
SEVIGHEQMRQTTLKSLGILEGRAMMRLIDKKPEDLKTQANVYKAPAVKP
RVDNDDQPSTSRSAMAAGGSGGGGGFALTSNMIKNLKRTAPEEKASGSEP
AKPLGESNQEQQPQPEPPKYDWGNGSGYLMNHPPEQKQAENEVEENPGRA
PPVVKIIGPRQAVLFSLDESKKNANDLPDSFFDLTVNDLKMVLRDLKRTS
SGDDDAPLLTAKLRELERQKAMLAKLNQYKDCVLRIQFPDRFVLQGMFKP
HEPLSKVEDFVREFLVQPGEQFHLFTIPPKKVLPSGETLLELNFVPNAIV
HFGFIKDSLNAVSNRFVKEEYVDQLTSEEGAHYAVQKYRLTRATASGSS*

GH28815.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33722-PE 478 CG33722-PE 1..478 22..499 2484 100 Plus
CG33722-PD 478 CG33722-PD 1..478 22..499 2484 100 Plus
CG33722-PB 478 CG33722-PB 1..478 22..499 2484 100 Plus
CG33722-PC 478 CG33722-PC 1..478 22..499 2484 100 Plus

GH28815.pep Sequence

Translation from 65 to 1501

> GH28815.pep
MDKRVTVLLPNGRRQNVNVTANMTLLEILETACFKHGYDAEEHCLKFHNK
VVGLTQQFRFSGLPNNCVLEMEQTEKRRTLSNVLVCVQLNDGSRQQGDFS
PNDTIWLVVEKLCETHVKAYESPVIIYMRSEVIGHEQMRQTTLKSLGILE
GRAMMRLIDKKPEDLKTQANVYKAPAVKPRVDNDDQPSTSRSAMAAGGSG
GGGGFALTSNMIKNLKRTAPEEKASGSEPAKPLGESNQEQQPQPEPPKYD
WGNGSGYLMNHPPEQKQAENEVEENPGRAPPVVKIIGPRQAVLFSLDESK
KNANDLPDSFFDLTVNDLKMVLRDLKRTSSGDDDAPLLTAKLRELERQKA
MLAKLNQYKDCVLRIQFPDRFVLQGMFKPHEPLSKVEDFVREFLVQPGEQ
FHLFTIPPKKVLPSGETLLELNFVPNAIVHFGFIKDSLNAVSNRFVKEEY
VDQLTSEEGAHYAVQKYRLTRATASGSS*

GH28815.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22989-PA 478 GF22989-PA 1..477 1..477 2007 81.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:31:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23811-PA 478 GG23811-PA 1..478 1..478 2317 91.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14200-PA 477 GH14200-PA 1..477 1..477 1671 66.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG33722-PE 478 CG33722-PE 1..478 1..478 2484 100 Plus
CG33722-PD 478 CG33722-PD 1..478 1..478 2484 100 Plus
CG33722-PB 478 CG33722-PB 1..478 1..478 2484 100 Plus
CG33722-PC 478 CG33722-PC 1..478 1..478 2484 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22110-PA 476 GI22110-PA 1..476 1..477 1688 68.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23357-PA 473 GL23357-PA 1..473 1..478 1885 75.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16075-PA 473 GA16075-PA 1..473 1..478 1889 75.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23709-PA 478 GM23709-PA 1..478 1..478 2492 97.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18522-PA 478 GD18522-PA 1..478 1..478 2500 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24227-PA 477 GJ24227-PA 1..477 1..477 1780 70.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13175-PA 480 GK13175-PA 1..480 1..478 1777 70.1 Plus
Dwil\GK13176-PA 212 GK13176-PA 7..212 273..478 865 75.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25856-PA 478 GE25856-PA 1..478 1..478 2360 93.1 Plus