BDGP Sequence Production Resources |
Search the DGRC for GH28821
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 288 |
Well: | 21 |
Vector: | pOT2 |
Associated Gene/Transcript | Snap25-RA |
Protein status: | GH28821.pep: gold |
Preliminary Size: | 2384 |
Sequenced Size: | 2203 |
Gene | Date | Evidence |
---|---|---|
CG40452 | 2003-01-01 | Sim4 clustering to Release 3 |
Snap25 | 2008-04-29 | Release 5.5 accounting |
Snap25 | 2008-08-15 | Release 5.9 accounting |
Snap25 | 2008-12-18 | 5.12 accounting |
2203 bp (2203 high quality bases) assembled on 2005-07-22
GenBank Submission: BT023789
> GH28821.complete ATACAGTTCTGTGTGTTTTGGTATCAAAAGATACGGGAAAAATATTCGTT TTTATTCTTCTAACAGCTATTTAAAAAGTCAGAATGCCAGCGGATCCATC TGAAGAAGTTGCCCCTCAGGTCCCGAAGACCGAGCTAGAAGAGCTGCAAA TTAATGCGCAAGGAGTAGCCGATGAGTCCCTGGAAAGTACGCGACGTATG CTTGCTCTGTGTGAGGAGAGCAAGGAGGCAGGGATTCGAACACTTGTAGC CCTTGATGATCAAGGAGAACAACTGGATCGTATTGAAGAAGGAATGGATC AAATTAATGCAGACATGAGAGAAGCAGAAAAAAATTTAAGTGGAATGGAA AAATGTTGCGGCATTTGTGTTCTTCCGTGCAATAAAAGTCAATCATTCAA AGAAGATGATGGGACCTGGAAAGGAAATGATGACGGAAAAGTTGTAAATA ATCAGCCACAGAGAGTGATGGATGATAGAAATGGCATGATGGCGCAAGCG GGTTATATTGGCAGGATAACGAACGACGCTAGAGAAGATGAAATGGAAGA AAATATGGGCCAGGTAAACACTATGATAGGCAATCTCCGAAATATGGCAT TGGATATGGGCTCTGAGCTGGAAAATCAAAATCGTCAAATTGATAGAATA AACCGGAAGGGTGAATCTAATGAAGCGCGGATAGCAGTTGCTAATCAAAG GGCACATCAACTATTAAAGTAAAAACATTGCAGGGCGACTAGGATATACA TAAACATTTCAAGAAAAGACATTCTGATACATACGTGTGCAACCTAGCCC TTTCTGTCTATGATTTAAGCCATCTATGTGCTCCAAAAAGTTATATAAAA CTGAACACATTTGAAAAAAAAATATTTTCAAAACATTTTAAAAGTACTTA ACTTTGTTGGTCCGAAATGTGTCGTATGAAATGTATATTTTTTTCGATAT GCCACTGTTCATTTTAAAGGTAAAATCATATTAATGACGATCTTAACTAC ATATGCATACAGAAAAACGAGGGGTAATCATAAAAGCGCCAATAGTATTT TGTGACGCTTAGTTCAAAATCTATCCATAATACTAGCATTTTATTACGCA TCTCCAAGGGATTCAATATGTAATATTTGTTTACATTACTTGACAAGTCG ATATTAGTCATTTCCTTCACTTCTTATACTAATGGCGTTTTTTGCTTAAA GCTATTGATTAAAACCTGTACAATCGTAGCTAAAAGTTTGTTCATACAGT ACCAAGGATGAAAATCACTTTGATCAAAGCCCTCGGTTGCTTATCACCCA TAATAAAATTTTGATAATAAATTTAAAAATTCTTGCCATATCAGCTGATG TCTCAAATTCCAAATATGTACGAAAGTGTACGAGTATGTTTTAAAATTAA ATTTCGCCTATCAAATATATATAATATGTATATAATATTATATAACATAT ATATAATGTTATTTGCGGTTTTTTTTATTAGAAACACCTCCATGCACACG ATTTGCAGTATATAATAAAAATATGTAAATACATTAAATTTAAAGGGAAA GTAGCATCCCAAGTCAACGTAAATATACCCTTACAAGCAAAACGGTCCTC ATGGTTTTAAGCTTAACTCGCATAAATTTGTATAGACTTCGAGTGAAAGA GTAAAAAAATCCGTTTATAATATGTAGAATATTAATAAAACAATATTTAA AATATAGGTACATTTTTCTTATTTAAAGGTAGGACTCTGTTAGGTATCTG TTGTTTGGTTTACCAGTTAATTTTATATCAAAAATTACATTTATTCTAAT TGACGCAAACTGTTCATGGCTATATCGACAAGGTGTTTCATAAAACATGA AGTATTTGTTAAAATTATAACGCTTAGTAAGGCTATGAATTGCAAAAATG TTCTTTGCTGATTGTCGCTTCGTAACTCATAAGTTATGTTCGTGTAAAAG CACAAGAATGTCGTAAAATTCACATTTTATTTTAAAACCTTTTAGACGAT GAAGTTATTACAACTTAAAACATACCTCTAACATACATAAATTGTTATCC AGCATACTAATGTAGTCAGGGTTTTTTAACATTTTTTGCTCACTTTAAAA TGTTAATAAATCCCTCTTATGAATGTTACAAACAAAAATGTATAAGTCCT GCAAAATTGAAATAAATTATTGGTCTATGCGCATAAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snap25-RA | 2337 | Snap25-RA | 154..2337 | 1..2184 | 10905 | 99.9 | Plus |
Snap25.d | 2035 | Snap25.d | 106..2035 | 255..2184 | 9620 | 99.8 | Plus |
Snap25.c | 1147 | Snap25.c | 106..1147 | 255..1296 | 5195 | 99.9 | Plus |
Snap25.d | 2035 | Snap25.d | 26..72 | 175..221 | 235 | 100 | Plus |
Snap25.c | 1147 | Snap25.c | 26..72 | 175..221 | 235 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 24286579..24288105 | 658..2184 | 7605 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 24247398..24247545 | 513..660 | 740 | 100 | Plus |
chr3L | 24539361 | chr3L | 24242701..24242830 | 386..515 | 650 | 100 | Plus |
chr3L | 24539361 | chr3L | 24198926..24199045 | 266..385 | 600 | 100 | Plus |
chr3L | 24539361 | chr3L | 24068369..24068464 | 81..176 | 480 | 100 | Plus |
chr3L | 24539361 | chr3L | 24063135..24063216 | 1..82 | 410 | 100 | Plus |
chr3R | 27901430 | chr3R | 5588405..5588616 | 379..168 | 280 | 75.5 | Minus |
chr3L | 24539361 | chr3L | 24150036..24150086 | 217..267 | 255 | 100 | Plus |
chr3L | 24539361 | chr3L | 24120101..24120144 | 175..218 | 220 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 24297679..24299207 | 658..2186 | 7630 | 99.9 | Plus |
3L | 28110227 | 3L | 24258490..24258637 | 513..660 | 740 | 100 | Plus |
3L | 28110227 | 3L | 24253793..24253922 | 386..515 | 650 | 100 | Plus |
3L | 28110227 | 3L | 24210019..24210138 | 266..385 | 600 | 100 | Plus |
3L | 28110227 | 3L | 24079463..24079558 | 81..176 | 480 | 100 | Plus |
3L | 28110227 | 3L | 24074229..24074310 | 1..82 | 410 | 100 | Plus |
3R | 32079331 | 3R | 9762569..9762780 | 379..168 | 280 | 75.5 | Minus |
3L | 28110227 | 3L | 24161129..24161179 | 217..267 | 255 | 100 | Plus |
3L | 28110227 | 3L | 24131194..24131237 | 175..218 | 220 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 24290779..24292307 | 658..2186 | 7630 | 99.9 | Plus |
3L | 28103327 | 3L | 24251590..24251737 | 513..660 | 740 | 100 | Plus |
3L | 28103327 | 3L | 24246893..24247022 | 386..515 | 650 | 100 | Plus |
3L | 28103327 | 3L | 24203119..24203238 | 266..385 | 600 | 100 | Plus |
3L | 28103327 | 3L | 24072563..24072658 | 81..176 | 480 | 100 | Plus |
3L | 28103327 | 3L | 24067329..24067410 | 1..82 | 410 | 100 | Plus |
3R | 31820162 | 3R | 9503400..9503611 | 379..168 | 280 | 75.4 | Minus |
3L | 28103327 | 3L | 24154229..24154279 | 217..267 | 255 | 100 | Plus |
3L | 28103327 | 3L | 24124294..24124337 | 175..218 | 220 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 24150036..24150086 | 217..267 | 100 | -> | Plus |
chr3L | 24198928..24199045 | 268..385 | 100 | -> | Plus |
chr3L | 24242701..24242829 | 386..514 | 100 | -> | Plus |
chr3L | 24247400..24247544 | 515..659 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 1..639 | 84..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 1..639 | 84..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 1..639 | 84..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 1..639 | 84..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 1..639 | 84..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 1..2184 | 1..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 1..2184 | 1..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 50..2233 | 1..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 1..2184 | 1..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snap25-RA | 50..2233 | 1..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 24161129..24161179 | 217..267 | 100 | -> | Plus |
3L | 24210021..24210138 | 268..385 | 100 | -> | Plus |
3L | 24253793..24253921 | 386..514 | 100 | -> | Plus |
3L | 24258492..24258636 | 515..659 | 100 | -> | Plus |
3L | 24297681..24299205 | 660..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 24161129..24161179 | 217..267 | 100 | -> | Plus |
3L | 24210021..24210138 | 268..385 | 100 | -> | Plus |
3L | 24253793..24253921 | 386..514 | 100 | -> | Plus |
3L | 24258492..24258636 | 515..659 | 100 | -> | Plus |
3L | 24297681..24299205 | 660..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 24161129..24161179 | 217..267 | 100 | -> | Plus |
3L | 24210021..24210138 | 268..385 | 100 | -> | Plus |
3L | 24253793..24253921 | 386..514 | 100 | -> | Plus |
3L | 24258492..24258636 | 515..659 | 100 | -> | Plus |
3L | 24297681..24299205 | 660..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 24154229..24154279 | 217..267 | 100 | -> | Plus |
arm_3L | 24203121..24203238 | 268..385 | 100 | -> | Plus |
arm_3L | 24246893..24247021 | 386..514 | 100 | -> | Plus |
arm_3L | 24251592..24251736 | 515..659 | 100 | -> | Plus |
arm_3L | 24290781..24292305 | 660..2184 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 24290781..24292305 | 660..2184 | 99 | Plus | |
3L | 24154229..24154279 | 217..267 | 100 | -> | Plus |
3L | 24203121..24203238 | 268..385 | 100 | -> | Plus |
3L | 24246893..24247021 | 386..514 | 100 | -> | Plus |
3L | 24251592..24251736 | 515..659 | 100 | -> | Plus |
Translation from 83 to 721
> GH28821.pep MPADPSEEVAPQVPKTELEELQINAQGVADESLESTRRMLALCEESKEAG IRTLVALDDQGEQLDRIEEGMDQINADMREAEKNLSGMEKCCGICVLPCN KSQSFKEDDGTWKGNDDGKVVNNQPQRVMDDRNGMMAQAGYIGRITNDAR EDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNEARI AVANQRAHQLLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23192-PA | 212 | GF23192-PA | 9..211 | 14..212 | 748 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13148-PA | 213 | GG13148-PA | 1..213 | 1..212 | 1089 | 99.5 | Plus |
Dere\GG17329-PA | 212 | GG17329-PA | 9..211 | 14..212 | 745 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19583-PA | 213 | GH19583-PA | 1..213 | 1..212 | 1059 | 96.2 | Plus |
Dgri\GH14348-PA | 211 | GH14348-PA | 8..210 | 14..212 | 747 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snap25-PA | 212 | CG40452-PA | 1..212 | 1..212 | 1093 | 100 | Plus |
Snap25-PC | 212 | CG40452-PC | 1..212 | 1..212 | 1065 | 96.7 | Plus |
Snap24-PA | 212 | CG9474-PA | 9..211 | 14..212 | 750 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23792-PA | 213 | GI23792-PA | 1..213 | 1..212 | 1061 | 95.8 | Plus |
Dmoj\GI24884-PA | 212 | GI24884-PA | 9..211 | 14..212 | 754 | 74.4 | Plus |
Dmoj\GI18402-PA | 283 | GI18402-PA | 74..282 | 32..212 | 155 | 24.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21971-PA | 213 | GL21971-PA | 1..213 | 1..212 | 1077 | 98.1 | Plus |
Dper\GL23234-PA | 211 | GL23234-PA | 8..210 | 14..212 | 760 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30171-PA | 381 | GA30171-PA | 1..214 | 1..209 | 993 | 90.2 | Plus |
Dpse\GA21816-PA | 211 | GA21816-PA | 8..210 | 14..212 | 760 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26215-PA | 130 | GM26215-PA | 1..129 | 88..212 | 426 | 65.1 | Plus |
Dsec\GM23424-PA | 69 | GM23424-PA | 1..69 | 144..212 | 345 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11935-PA | 331 | GD11935-PA | 30..69 | 1..40 | 162 | 77.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11142-PA | 175 | GJ11142-PA | 1..154 | 39..192 | 796 | 97.4 | Plus |
Dvir\GJ24526-PA | 212 | GJ24526-PA | 9..211 | 14..212 | 752 | 73.4 | Plus |
Dvir\GJ21482-PA | 280 | GJ21482-PA | 75..279 | 32..212 | 155 | 23.9 | Plus |
Translation from 218 to 721
> GH28821.hyp SKEAGIRTLVALDDQGEQLDRIEEGMDQINADMREAEKNLSGMEKCCGIC VLPCNKSQSFKEDDGTWKGNDDGKVVNNQPQRVMDDRNGMMAQAGYIGRI TNDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGES NEARIAVANQRAHQLLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snap25-PA | 212 | CG40452-PA | 46..212 | 1..167 | 869 | 100 | Plus |
Snap25-PC | 212 | CG40452-PC | 46..212 | 1..167 | 841 | 95.8 | Plus |
Snap24-PA | 212 | CG9474-PA | 41..211 | 1..167 | 640 | 71.9 | Plus |