Clone GH28821 Report

Search the DGRC for GH28821

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:288
Well:21
Vector:pOT2
Associated Gene/TranscriptSnap25-RA
Protein status:GH28821.pep: gold
Preliminary Size:2384
Sequenced Size:2203

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG40452 2003-01-01 Sim4 clustering to Release 3
Snap25 2008-04-29 Release 5.5 accounting
Snap25 2008-08-15 Release 5.9 accounting
Snap25 2008-12-18 5.12 accounting

Clone Sequence Records

GH28821.complete Sequence

2203 bp (2203 high quality bases) assembled on 2005-07-22

GenBank Submission: BT023789

> GH28821.complete
ATACAGTTCTGTGTGTTTTGGTATCAAAAGATACGGGAAAAATATTCGTT
TTTATTCTTCTAACAGCTATTTAAAAAGTCAGAATGCCAGCGGATCCATC
TGAAGAAGTTGCCCCTCAGGTCCCGAAGACCGAGCTAGAAGAGCTGCAAA
TTAATGCGCAAGGAGTAGCCGATGAGTCCCTGGAAAGTACGCGACGTATG
CTTGCTCTGTGTGAGGAGAGCAAGGAGGCAGGGATTCGAACACTTGTAGC
CCTTGATGATCAAGGAGAACAACTGGATCGTATTGAAGAAGGAATGGATC
AAATTAATGCAGACATGAGAGAAGCAGAAAAAAATTTAAGTGGAATGGAA
AAATGTTGCGGCATTTGTGTTCTTCCGTGCAATAAAAGTCAATCATTCAA
AGAAGATGATGGGACCTGGAAAGGAAATGATGACGGAAAAGTTGTAAATA
ATCAGCCACAGAGAGTGATGGATGATAGAAATGGCATGATGGCGCAAGCG
GGTTATATTGGCAGGATAACGAACGACGCTAGAGAAGATGAAATGGAAGA
AAATATGGGCCAGGTAAACACTATGATAGGCAATCTCCGAAATATGGCAT
TGGATATGGGCTCTGAGCTGGAAAATCAAAATCGTCAAATTGATAGAATA
AACCGGAAGGGTGAATCTAATGAAGCGCGGATAGCAGTTGCTAATCAAAG
GGCACATCAACTATTAAAGTAAAAACATTGCAGGGCGACTAGGATATACA
TAAACATTTCAAGAAAAGACATTCTGATACATACGTGTGCAACCTAGCCC
TTTCTGTCTATGATTTAAGCCATCTATGTGCTCCAAAAAGTTATATAAAA
CTGAACACATTTGAAAAAAAAATATTTTCAAAACATTTTAAAAGTACTTA
ACTTTGTTGGTCCGAAATGTGTCGTATGAAATGTATATTTTTTTCGATAT
GCCACTGTTCATTTTAAAGGTAAAATCATATTAATGACGATCTTAACTAC
ATATGCATACAGAAAAACGAGGGGTAATCATAAAAGCGCCAATAGTATTT
TGTGACGCTTAGTTCAAAATCTATCCATAATACTAGCATTTTATTACGCA
TCTCCAAGGGATTCAATATGTAATATTTGTTTACATTACTTGACAAGTCG
ATATTAGTCATTTCCTTCACTTCTTATACTAATGGCGTTTTTTGCTTAAA
GCTATTGATTAAAACCTGTACAATCGTAGCTAAAAGTTTGTTCATACAGT
ACCAAGGATGAAAATCACTTTGATCAAAGCCCTCGGTTGCTTATCACCCA
TAATAAAATTTTGATAATAAATTTAAAAATTCTTGCCATATCAGCTGATG
TCTCAAATTCCAAATATGTACGAAAGTGTACGAGTATGTTTTAAAATTAA
ATTTCGCCTATCAAATATATATAATATGTATATAATATTATATAACATAT
ATATAATGTTATTTGCGGTTTTTTTTATTAGAAACACCTCCATGCACACG
ATTTGCAGTATATAATAAAAATATGTAAATACATTAAATTTAAAGGGAAA
GTAGCATCCCAAGTCAACGTAAATATACCCTTACAAGCAAAACGGTCCTC
ATGGTTTTAAGCTTAACTCGCATAAATTTGTATAGACTTCGAGTGAAAGA
GTAAAAAAATCCGTTTATAATATGTAGAATATTAATAAAACAATATTTAA
AATATAGGTACATTTTTCTTATTTAAAGGTAGGACTCTGTTAGGTATCTG
TTGTTTGGTTTACCAGTTAATTTTATATCAAAAATTACATTTATTCTAAT
TGACGCAAACTGTTCATGGCTATATCGACAAGGTGTTTCATAAAACATGA
AGTATTTGTTAAAATTATAACGCTTAGTAAGGCTATGAATTGCAAAAATG
TTCTTTGCTGATTGTCGCTTCGTAACTCATAAGTTATGTTCGTGTAAAAG
CACAAGAATGTCGTAAAATTCACATTTTATTTTAAAACCTTTTAGACGAT
GAAGTTATTACAACTTAAAACATACCTCTAACATACATAAATTGTTATCC
AGCATACTAATGTAGTCAGGGTTTTTTAACATTTTTTGCTCACTTTAAAA
TGTTAATAAATCCCTCTTATGAATGTTACAAACAAAAATGTATAAGTCCT
GCAAAATTGAAATAAATTATTGGTCTATGCGCATAAAAAAAAAAAAAAAA
AAA

GH28821.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Snap25-RA 2337 Snap25-RA 154..2337 1..2184 10905 99.9 Plus
Snap25.d 2035 Snap25.d 106..2035 255..2184 9620 99.8 Plus
Snap25.c 1147 Snap25.c 106..1147 255..1296 5195 99.9 Plus
Snap25.d 2035 Snap25.d 26..72 175..221 235 100 Plus
Snap25.c 1147 Snap25.c 26..72 175..221 235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 24286579..24288105 658..2184 7605 99.9 Plus
chr3L 24539361 chr3L 24247398..24247545 513..660 740 100 Plus
chr3L 24539361 chr3L 24242701..24242830 386..515 650 100 Plus
chr3L 24539361 chr3L 24198926..24199045 266..385 600 100 Plus
chr3L 24539361 chr3L 24068369..24068464 81..176 480 100 Plus
chr3L 24539361 chr3L 24063135..24063216 1..82 410 100 Plus
chr3R 27901430 chr3R 5588405..5588616 379..168 280 75.5 Minus
chr3L 24539361 chr3L 24150036..24150086 217..267 255 100 Plus
chr3L 24539361 chr3L 24120101..24120144 175..218 220 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 24297679..24299207 658..2186 7630 99.9 Plus
3L 28110227 3L 24258490..24258637 513..660 740 100 Plus
3L 28110227 3L 24253793..24253922 386..515 650 100 Plus
3L 28110227 3L 24210019..24210138 266..385 600 100 Plus
3L 28110227 3L 24079463..24079558 81..176 480 100 Plus
3L 28110227 3L 24074229..24074310 1..82 410 100 Plus
3R 32079331 3R 9762569..9762780 379..168 280 75.5 Minus
3L 28110227 3L 24161129..24161179 217..267 255 100 Plus
3L 28110227 3L 24131194..24131237 175..218 220 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 24290779..24292307 658..2186 7630 99.9 Plus
3L 28103327 3L 24251590..24251737 513..660 740 100 Plus
3L 28103327 3L 24246893..24247022 386..515 650 100 Plus
3L 28103327 3L 24203119..24203238 266..385 600 100 Plus
3L 28103327 3L 24072563..24072658 81..176 480 100 Plus
3L 28103327 3L 24067329..24067410 1..82 410 100 Plus
3R 31820162 3R 9503400..9503611 379..168 280 75.4 Minus
3L 28103327 3L 24154229..24154279 217..267 255 100 Plus
3L 28103327 3L 24124294..24124337 175..218 220 100 Plus
Blast to na_te.dros performed 2019-03-16 15:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
1360 3409 1360 1360 3409bp 3030..3185 1318..1483 139 59.3 Plus
Tc1-2 1644 Tc1-2 TC1-2 1644bp 340..504 1621..1789 123 56.7 Plus

GH28821.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:20:00 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 24150036..24150086 217..267 100 -> Plus
chr3L 24198928..24199045 268..385 100 -> Plus
chr3L 24242701..24242829 386..514 100 -> Plus
chr3L 24247400..24247544 515..659 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:58:25 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 1..639 84..722 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:56:19 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 1..639 84..722 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:43:05 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 1..639 84..722 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:59 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 1..639 84..722 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:44:22 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 1..639 84..722 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:19 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 1..2184 1..2184 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:56:18 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 1..2184 1..2184 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:43:05 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 50..2233 1..2184 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:59 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 1..2184 1..2184 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:44:22 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
Snap25-RA 50..2233 1..2184 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:20:00 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24161129..24161179 217..267 100 -> Plus
3L 24210021..24210138 268..385 100 -> Plus
3L 24253793..24253921 386..514 100 -> Plus
3L 24258492..24258636 515..659 100 -> Plus
3L 24297681..24299205 660..2184 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:20:00 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24161129..24161179 217..267 100 -> Plus
3L 24210021..24210138 268..385 100 -> Plus
3L 24253793..24253921 386..514 100 -> Plus
3L 24258492..24258636 515..659 100 -> Plus
3L 24297681..24299205 660..2184 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:20:00 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24161129..24161179 217..267 100 -> Plus
3L 24210021..24210138 268..385 100 -> Plus
3L 24253793..24253921 386..514 100 -> Plus
3L 24258492..24258636 515..659 100 -> Plus
3L 24297681..24299205 660..2184 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:43:05 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 24154229..24154279 217..267 100 -> Plus
arm_3L 24203121..24203238 268..385 100 -> Plus
arm_3L 24246893..24247021 386..514 100 -> Plus
arm_3L 24251592..24251736 515..659 100 -> Plus
arm_3L 24290781..24292305 660..2184 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:38 Download gff for GH28821.complete
Subject Subject Range Query Range Percent Splice Strand
3L 24290781..24292305 660..2184 99   Plus
3L 24154229..24154279 217..267 100 -> Plus
3L 24203121..24203238 268..385 100 -> Plus
3L 24246893..24247021 386..514 100 -> Plus
3L 24251592..24251736 515..659 100 -> Plus

GH28821.pep Sequence

Translation from 83 to 721

> GH28821.pep
MPADPSEEVAPQVPKTELEELQINAQGVADESLESTRRMLALCEESKEAG
IRTLVALDDQGEQLDRIEEGMDQINADMREAEKNLSGMEKCCGICVLPCN
KSQSFKEDDGTWKGNDDGKVVNNQPQRVMDDRNGMMAQAGYIGRITNDAR
EDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGESNEARI
AVANQRAHQLLK*

GH28821.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23192-PA 212 GF23192-PA 9..211 14..212 748 72.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13148-PA 213 GG13148-PA 1..213 1..212 1089 99.5 Plus
Dere\GG17329-PA 212 GG17329-PA 9..211 14..212 745 72.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19583-PA 213 GH19583-PA 1..213 1..212 1059 96.2 Plus
Dgri\GH14348-PA 211 GH14348-PA 8..210 14..212 747 72.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
Snap25-PA 212 CG40452-PA 1..212 1..212 1093 100 Plus
Snap25-PC 212 CG40452-PC 1..212 1..212 1065 96.7 Plus
Snap24-PA 212 CG9474-PA 9..211 14..212 750 71.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23792-PA 213 GI23792-PA 1..213 1..212 1061 95.8 Plus
Dmoj\GI24884-PA 212 GI24884-PA 9..211 14..212 754 74.4 Plus
Dmoj\GI18402-PA 283 GI18402-PA 74..282 32..212 155 24.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21971-PA 213 GL21971-PA 1..213 1..212 1077 98.1 Plus
Dper\GL23234-PA 211 GL23234-PA 8..210 14..212 760 72.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30171-PA 381 GA30171-PA 1..214 1..209 993 90.2 Plus
Dpse\GA21816-PA 211 GA21816-PA 8..210 14..212 760 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26215-PA 130 GM26215-PA 1..129 88..212 426 65.1 Plus
Dsec\GM23424-PA 69 GM23424-PA 1..69 144..212 345 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11935-PA 331 GD11935-PA 30..69 1..40 162 77.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11142-PA 175 GJ11142-PA 1..154 39..192 796 97.4 Plus
Dvir\GJ24526-PA 212 GJ24526-PA 9..211 14..212 752 73.4 Plus
Dvir\GJ21482-PA 280 GJ21482-PA 75..279 32..212 155 23.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11144-PA 213 GK11144-PA 1..213 1..212 1061 96.7 Plus
Dwil\GK11126-PA 211 GK11126-PA 8..210 14..212 746 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14854-PA 218 GE14854-PA 1..206 1..205 1000 94.2 Plus
Dyak\GE24734-PA 212 GE24734-PA 9..211 14..212 744 72.9 Plus

GH28821.hyp Sequence

Translation from 218 to 721

> GH28821.hyp
SKEAGIRTLVALDDQGEQLDRIEEGMDQINADMREAEKNLSGMEKCCGIC
VLPCNKSQSFKEDDGTWKGNDDGKVVNNQPQRVMDDRNGMMAQAGYIGRI
TNDAREDEMEENMGQVNTMIGNLRNMALDMGSELENQNRQIDRINRKGES
NEARIAVANQRAHQLLK*

GH28821.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Snap25-PA 212 CG40452-PA 46..212 1..167 869 100 Plus
Snap25-PC 212 CG40452-PC 46..212 1..167 841 95.8 Plus
Snap24-PA 212 CG9474-PA 41..211 1..167 640 71.9 Plus