Clone GH28826 Report

Search the DGRC for GH28826

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:288
Well:26
Vector:pOT2
Associated Gene/TranscriptCG10958-RA
Protein status:GH28826.pep: gold
Preliminary Size:2534
Sequenced Size:2580

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10958 2001-01-01 Release 2 assignment
CG10958 2001-07-04 Blastp of sequenced clone
CG10958 2003-01-01 Sim4 clustering to Release 3
CG10958 2008-04-29 Release 5.5 accounting
CG10958 2008-08-15 Release 5.9 accounting
CG10958 2008-12-18 5.12 accounting

Clone Sequence Records

GH28826.complete Sequence

2580 bp (2580 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051637

> GH28826.complete
CCAGTCACACAACAAACCACCTTGATTTGGAGCAGAGTTGCCTTCAGAAA
TTCCGCACAACAAAGCGATTCTCATCCAAATCTCGACCTGGCATATATTT
TAAACAATGGACGACAACGAGGATGAGCTGGAGGAGCACCAGGAGCTGGT
CAGCGACGGCAGTGTCGAGGAGGAGGAGGAGGTGGAGCCCGATCTGGGAC
CAGTGGACAGTTGGGAGTCCTTTAATGACCGCATCGATGGCCTGATCTTT
AACGAGCGATGCGACAAGTCGGTGAAGAAGTTGGACGAACGCCGGCTGGC
GATACTCAACCGGGTGCGTCAGCAGTTCCGCGAGGCCCCGAAAGGCGTCG
CCGAACGTTGCCAGGCCCAGAAGTCGCCGATTGATCAACGGCTGGAGTTG
TCCAGTGAGCGATTGAACGAACTGGTGCGCTTTGGCAAAGAACTAGTGAC
CAATGTCCGGGTGGCCAACGAGCGAAGGGAGCTGAATCGCCGACTCTTCG
AGGGTGCGCAGAAGAATCAGATGCATGTGAAGCTGCAACGCGAAAGCGTT
GAGACAATGGCCCGTTTCGAGAACATTAAGGCGCGCTGGACGGAGCTGGA
GGAGACCAATGAGCCGATGCTGTTGTGGGACCAAATCGAAGAGCAAAAGA
AACGCATTGCCGAGATTATGGCACGCAAGGATGAGATGATATCTGCCTGC
CAAGCGGAGGTGGACCGCATGAATGCCAAGTACGAGTTCGATCGCGAGCG
GCAGGCCCAGGATCTTTGTTGTCTGGTGGAGCGCGTTGATCACCAGGTGG
AGACGCTTAAGGAGGCCTACAAGGAGCACATCCAAATGCTGCGGCAAACC
ATCGAGGAGGAGCGTCAAATCTTCGCCGATAATGCGGTGGAGAAGTGGCG
CACCTTCTTCGATGCGATGAATGCCAACTTTGACGAGAAGGCCAATTTGG
TAAGGGCACGCGAGCAATTCTATGCTCGCCAAACCCAGCAGATCAACGAG
TCCCAGGAGGAGCTGACCAAGAGCACTCGCATTCGGCTGGAGAAGGAGTG
CGAGAGGCTCGAGCTGGAGCTACGTCGCACGCGCGACAATGTGCTGATGA
ACTCCGAGAAGCTGGACTACAACTATCAGGTTCTCCAGAAGCGCAACGAG
GAGAACGTGATCATTAACAACCAGCAGAAGCGACGGGTGGCCCGACTGCA
TGAGGCGATCGGACGCACCCGGCGTGGCCTGAAGAATCTTTACAACACGG
GCAAGCGGAACATAGCCCGTCTTTCCTCGGACATCTACAAGCTGCACTCC
AACATCAACGATATGGAGTCGAAGGCGCATCAGGCGAGGCTGAACAATCG
CGAAAAGTTCGATCGCATCTGGGAGATCAACTACAAGGAACTGAACCTGC
TGGTGGATCGGGTCTACCACATCGATCGCATCATACACGAGCAGCAGTTG
GCCATGCCGTGGTCCAGCCCCGTGCCACCCATTCCAAACATCAACAAGGC
GAAGAAAAAGCGCAATAACATTCTGGAGAAGTTTGACATGCGAATTGGCC
GGGTTCCCAAGAACAGGGTGATGCCCAACTCGGGCGTAAATTGCAAGCCG
GATATCAAGGAGCTTCCGCCGGATTCACTACGCTTGATGCGTAATCTTAT
TCGCAAGCTGTCCGATCGCGGCGGTTTCCTCATCGAGGAGCGTCTGCTAA
AGATTCTTGAACCGTATTCCGAGGAGGAAAAATGCCTGGTACGCATCGAC
AATATATTTGCGGCGCTGCGAATTCGTCATCTGCGGGATGTCAAGGAACT
GACCAAGGTTTTCATGCCGTACACCTACTGTCCGAATTGCCAGCCGCAGG
GATTGAGTCCACGCAAGTGTGCCGAGGTGTTCATGAAGGATCAAAAGCCA
AATCGGCTGCAGGGCGCGGCGGGTGGCCAACCGGATGAAAAGGAGCATAG
GTCGACAGGGGATACATTTCTACCCAAGAGCGAGGTGGCGGCCAAGAGAT
GTCACAATCACTATCTGGTCATGGAACCGGCCCTCTGCCTGCACGCCATG
AATCTGTTCACCTCCAAGATGCACAAAAAGATGTACGAACACGAACCGGG
TAGCATTCTCAATGCGGTAAATCTCATTCAGATTACAGATGCGGAGATCC
GTAATTTCTGGCGCCAGTTCTCGGCCTGCTTCCCGGCCTCCAAGTGCAAG
CTGTGGAAGACACTGGAGCACGGACTGAATCACTACGTTGAGGTGCTCAA
GATGCGTGTGCAGTACGATGCGGAAGTCGTCTTTCTGCGTCGCCAAAACG
AAGAGTTGCGCCATCTGCTGCAAAAGTTCACCGTCTAGGTGCGATATTAT
TCAATTACAGCCTCAACCGCAATGCACATACATAATCCCAAGCAATTATT
GTCCGATTTCACTGCAAACATGATAAATTATAATTGTGCCTAGGTCTTGC
TCTTTGACATTGACATCGAAATAGTTTAGAGACGTGGGGTCCCTGCACGG
GCGCCATCTGAAAAAGCTTGTTTCATTCAAGAGTCGTGCAATAAAAGTAT
ATTTTGAACATGAAAAAAAAAAAAAAAAAA

GH28826.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10958-RA 2562 CG10958-RA 1..2562 1..2562 12810 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:23:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8024245..8026806 1..2562 12600 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8132406..8134971 1..2566 12830 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8140504..8143069 1..2566 12830 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:23:53 has no hits.

GH28826.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:24:45 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8024245..8026806 1..2562 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:23 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 1..2232 107..2338 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:06 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 1..2232 107..2338 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:27:27 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 1..2232 107..2338 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:48 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 1..2232 107..2338 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:05:17 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 1..2232 107..2338 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:38 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 1..2562 1..2562 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:06 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 1..2562 1..2562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:27 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 122..2683 1..2562 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:49 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 1..2562 1..2562 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:17 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
CG10958-RA 122..2683 1..2562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:45 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
X 8132406..8134967 1..2562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:45 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
X 8132406..8134967 1..2562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:45 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
X 8132406..8134967 1..2562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:27 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8026439..8029000 1..2562 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:34 Download gff for GH28826.complete
Subject Subject Range Query Range Percent Splice Strand
X 8140504..8143065 1..2562 100   Plus

GH28826.pep Sequence

Translation from 106 to 2337

> GH28826.pep
MDDNEDELEEHQELVSDGSVEEEEEVEPDLGPVDSWESFNDRIDGLIFNE
RCDKSVKKLDERRLAILNRVRQQFREAPKGVAERCQAQKSPIDQRLELSS
ERLNELVRFGKELVTNVRVANERRELNRRLFEGAQKNQMHVKLQRESVET
MARFENIKARWTELEETNEPMLLWDQIEEQKKRIAEIMARKDEMISACQA
EVDRMNAKYEFDRERQAQDLCCLVERVDHQVETLKEAYKEHIQMLRQTIE
EERQIFADNAVEKWRTFFDAMNANFDEKANLVRAREQFYARQTQQINESQ
EELTKSTRIRLEKECERLELELRRTRDNVLMNSEKLDYNYQVLQKRNEEN
VIINNQQKRRVARLHEAIGRTRRGLKNLYNTGKRNIARLSSDIYKLHSNI
NDMESKAHQARLNNREKFDRIWEINYKELNLLVDRVYHIDRIIHEQQLAM
PWSSPVPPIPNINKAKKKRNNILEKFDMRIGRVPKNRVMPNSGVNCKPDI
KELPPDSLRLMRNLIRKLSDRGGFLIEERLLKILEPYSEEEKCLVRIDNI
FAALRIRHLRDVKELTKVFMPYTYCPNCQPQGLSPRKCAEVFMKDQKPNR
LQGAAGGQPDEKEHRSTGDTFLPKSEVAAKRCHNHYLVMEPALCLHAMNL
FTSKMHKKMYEHEPGSILNAVNLIQITDAEIRNFWRQFSACFPASKCKLW
KTLEHGLNHYVEVLKMRVQYDAEVVFLRRQNEELRHLLQKFTV*

GH28826.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21304-PA 746 GF21304-PA 1..746 1..743 3467 89.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19294-PA 743 GG19294-PA 1..743 1..743 3683 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24094-PA 766 GH24094-PA 32..766 7..743 2337 61.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10958-PA 743 CG10958-PA 1..743 1..743 3871 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14361-PA 580 GI14361-PA 2..578 3..567 1772 60.9 Plus
Dmoj\GI14362-PA 165 GI14362-PA 2..165 582..743 479 60.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20357-PA 740 GL20357-PA 3..740 2..743 2828 73.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10667-PA 738 GA10667-PA 3..738 2..743 2952 75.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11227-PA 743 GM11227-PA 1..743 1..743 3880 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16879-PA 743 GD16879-PA 1..743 1..743 3895 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19402-PA 760 GJ19402-PA 19..760 13..743 2435 63.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10133-PA 757 GK10133-PA 17..757 12..743 2898 73.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15761-PA 743 GE15761-PA 1..743 1..743 3779 96.1 Plus

GH28826.hyp Sequence

Translation from 106 to 2337

> GH28826.hyp
MDDNEDELEEHQELVSDGSVEEEEEVEPDLGPVDSWESFNDRIDGLIFNE
RCDKSVKKLDERRLAILNRVRQQFREAPKGVAERCQAQKSPIDQRLELSS
ERLNELVRFGKELVTNVRVANERRELNRRLFEGAQKNQMHVKLQRESVET
MARFENIKARWTELEETNEPMLLWDQIEEQKKRIAEIMARKDEMISACQA
EVDRMNAKYEFDRERQAQDLCCLVERVDHQVETLKEAYKEHIQMLRQTIE
EERQIFADNAVEKWRTFFDAMNANFDEKANLVRAREQFYARQTQQINESQ
EELTKSTRIRLEKECERLELELRRTRDNVLMNSEKLDYNYQVLQKRNEEN
VIINNQQKRRVARLHEAIGRTRRGLKNLYNTGKRNIARLSSDIYKLHSNI
NDMESKAHQARLNNREKFDRIWEINYKELNLLVDRVYHIDRIIHEQQLAM
PWSSPVPPIPNINKAKKKRNNILEKFDMRIGRVPKNRVMPNSGVNCKPDI
KELPPDSLRLMRNLIRKLSDRGGFLIEERLLKILEPYSEEEKCLVRIDNI
FAALRIRHLRDVKELTKVFMPYTYCPNCQPQGLSPRKCAEVFMKDQKPNR
LQGAAGGQPDEKEHRSTGDTFLPKSEVAAKRCHNHYLVMEPALCLHAMNL
FTSKMHKKMYEHEPGSILNAVNLIQITDAEIRNFWRQFSACFPASKCKLW
KTLEHGLNHYVEVLKMRVQYDAEVVFLRRQNEELRHLLQKFTV*

GH28826.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10958-PA 743 CG10958-PA 1..743 1..743 3871 100 Plus