Clone GH28859 Report

Search the DGRC for GH28859

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:288
Well:59
Vector:pOT2
Associated Gene/TranscriptAtg3-RA
Protein status:GH28859.pep: gold
Preliminary Size:1353
Sequenced Size:1226

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6877 2001-01-01 Release 2 assignment
CG6877 2002-05-31 Blastp of sequenced clone
CG6877 2003-01-01 Sim4 clustering to Release 3
Aut1 2008-04-29 Release 5.5 accounting
Aut1 2008-08-15 Release 5.9 accounting
Aut1 2008-12-18 5.12 accounting

Clone Sequence Records

GH28859.complete Sequence

1226 bp (1226 high quality bases) assembled on 2002-05-31

GenBank Submission: AY119557

> GH28859.complete
CAAGACAAAAACAATTAGCTGCGAAGTGCAAGTCAATTGAGAGAGCCATC
TTAATTGTATTTATTAAGTTTAAGCGTTTAGATTAGTGCGAATACTCAGC
GGCCAACGAAATGCAGAGTGTTCTCAACACCGTCAAGGGCACAGCGCTCA
ATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTCCGTGAG
ACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCACCTGGT
GCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCAAGACAA
AACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAATGTTCCC
TGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGACGCTGGT
GGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAACTGAACG
ATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACAATGGAG
GAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGCGCCGGG
CGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTGACATGG
ACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCTGTAGCC
ACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGTGGCAGC
CGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATACACGCA
CGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCGCGACTC
TGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGAACAGAT
GTACGAGGATGTCTCGCAGGATCACGCGAAGAAAACTGTCACCATGGAGT
CCCATCCGCATCTTCCAGGTCCCAATATGGCCTCTGTGCATCCATGTCGG
CATGCGGATATCATGAAGAAGATTATACAGACGGTAGAGGAGGGCGGCGG
TCAGCTGGGAGTGCATTTATACTTGATCATATTCCTCAAATTCGTTCAGA
CCGTCATACCAACCATCGAATACGATTTTACGCAAAACTTCAACATGTCT
TAAGACCCGCCATGCTTTTCAATATTGACGCAATAAATATATAACTCATT
AAACGCAAGTTTGTGACCTAATAATTGAATAAAGATTTGGACAAACGCTT
AAAAAAAAAAAAAAAAAAAAAAAAAA

GH28859.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
Aut1-RA 1380 Aut1-RA 110..1310 1..1201 6005 100 Plus
Aut1.a 2478 Aut1.a 110..1310 1..1201 6005 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18739422..18740114 508..1200 3420 99.6 Plus
chr3L 24539361 chr3L 18739178..18739370 318..510 965 100 Plus
chr3L 24539361 chr3L 18738338..18738520 1..183 915 100 Plus
chr3L 24539361 chr3L 18738967..18739110 175..318 705 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:34:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18749791..18750484 508..1201 3470 100 Plus
3L 28110227 3L 18749547..18749739 318..510 965 100 Plus
3L 28110227 3L 18748708..18748890 1..183 915 100 Plus
3L 28110227 3L 18749336..18749479 175..318 705 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:28:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18742891..18743584 508..1201 3470 100 Plus
3L 28103327 3L 18742647..18742839 318..510 965 100 Plus
3L 28103327 3L 18741808..18741990 1..183 915 100 Plus
3L 28103327 3L 18742436..18742579 175..318 705 99.3 Plus
Blast to na_te.dros performed on 2019-03-16 23:34:01 has no hits.

GH28859.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:35:09 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18738338..18738519 1..182 100 -> Plus
chr3L 18738975..18739110 183..318 100 -> Plus
chr3L 18739179..18739369 319..509 100 -> Plus
chr3L 18739424..18740114 510..1200 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:30 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..993 111..1103 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:34:34 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..993 111..1103 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:25 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..993 111..1103 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:26:09 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..993 111..1103 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:40 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Atg3-RA 1..993 111..1103 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:05:47 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..1200 1..1200 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:34:33 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..1200 1..1200 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:25 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 22..1221 1..1200 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:26:09 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..1200 1..1200 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:40 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
Atg3-RA 22..1221 1..1200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:09 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18748708..18748889 1..182 100 -> Plus
3L 18749344..18749479 183..318 100 -> Plus
3L 18749548..18749738 319..509 100 -> Plus
3L 18749793..18750483 510..1200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:09 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18748708..18748889 1..182 100 -> Plus
3L 18749344..18749479 183..318 100 -> Plus
3L 18749548..18749738 319..509 100 -> Plus
3L 18749793..18750483 510..1200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:35:09 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18748708..18748889 1..182 100 -> Plus
3L 18749344..18749479 183..318 100 -> Plus
3L 18749548..18749738 319..509 100 -> Plus
3L 18749793..18750483 510..1200 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:25 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18741808..18741989 1..182 100 -> Plus
arm_3L 18742444..18742579 183..318 100 -> Plus
arm_3L 18742648..18742838 319..509 100 -> Plus
arm_3L 18742893..18743583 510..1200 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:58:35 Download gff for GH28859.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18742893..18743583 510..1200 100   Plus
3L 18741808..18741989 1..182 100 -> Plus
3L 18742444..18742579 183..318 100 -> Plus
3L 18742648..18742838 319..509 100 -> Plus

GH28859.hyp Sequence

Translation from 110 to 1102

> GH28859.hyp
MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHC
PTWQWAAGDETKTKPYLPKDKQFLITRNVPCYRRCKQMEYVGEETLVEEE
SGDGGWVETHQLNDDGTTQLEDKICELTMEETKEEMHTPDSDKSAPGAGG
QAEDEDDDEAIDMDDFEESGMLELVDPAVATTTRKPEPEAKASPVAAASG
DAEASGDSVLHTRTYDLHISYDKYYQTPRLWVVGYDEQRKPLTVEQMYED
VSQDHAKKTVTMESHPHLPGPNMASVHPCRHADIMKKIIQTVEEGGGQLG
VHLYLIIFLKFVQTVIPTIEYDFTQNFNMS*

GH28859.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:52:34
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-PA 330 CG6877-PA 1..330 1..330 1761 100 Plus

GH28859.pep Sequence

Translation from 110 to 1102

> GH28859.pep
MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHC
PTWQWAAGDETKTKPYLPKDKQFLITRNVPCYRRCKQMEYVGEETLVEEE
SGDGGWVETHQLNDDGTTQLEDKICELTMEETKEEMHTPDSDKSAPGAGG
QAEDEDDDEAIDMDDFEESGMLELVDPAVATTTRKPEPEAKASPVAAASG
DAEASGDSVLHTRTYDLHISYDKYYQTPRLWVVGYDEQRKPLTVEQMYED
VSQDHAKKTVTMESHPHLPGPNMASVHPCRHADIMKKIIQTVEEGGGQLG
VHLYLIIFLKFVQTVIPTIEYDFTQNFNMS*

GH28859.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23640-PA 332 GF23640-PA 1..332 1..330 1698 96.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13677-PA 330 GG13677-PA 1..330 1..330 1742 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14373-PA 332 GH14373-PA 1..332 1..330 1493 86.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-PA 330 CG6877-PA 1..330 1..330 1761 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11317-PA 334 GI11317-PA 1..334 1..330 1510 85.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24881-PA 328 GL24881-PA 1..328 1..330 1587 93.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19925-PA 328 GA19925-PA 1..328 1..330 1584 93.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14991-PA 330 GM14991-PA 1..330 1..330 1752 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14768-PA 330 GD14768-PA 1..330 1..330 1744 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11573-PA 334 GJ11573-PA 1..334 1..330 1515 88 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12099-PA 311 GK12099-PA 1..311 1..297 1275 84.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Aut1-PA 330 GE19973-PA 1..330 1..330 1754 98.8 Plus