Clone GM01014 Report

Search the DGRC for GM01014

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:10
Well:14
Vector:pBS SK-
Associated Gene/TranscriptCG42365-RA
Protein status:GM01014.pep: gold
Preliminary Size:1062
Sequenced Size:867

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15675 2001-01-01 Release 2 assignment
CG15675 2002-03-19 Blastp of sequenced clone
CG15675 2003-01-01 Sim4 clustering to Release 3
CG15675 2008-04-29 Release 5.5 accounting
CG15675 2008-08-15 Release 5.9 accounting
CG42365 2008-12-18 5.12 accounting

Clone Sequence Records

GM01014.complete Sequence

867 bp (867 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094739

> GM01014.complete
AGCTGAGTATTTCGAATCTTTACAAAACAATCCATCTATTTAACGAGTGG
CCTCTGACCAACACAACTCAGTATTAGCATAAACATTAAAAGGGACACAT
TACAAAATTCTAAAAATTATAACCATGGAATCTGAAGCTCAAGAACGTAC
TGCACCTGTATCTGCAAACAAAAGTGATTCATCAGCGGCACCTGTGCTCA
ATATATCCGGAAGGGTCAAGTCAGAATGGAATACACCCCGTATTAGGGGC
AAAAAGAAGCCGCCGGCTGTCTTGGAAGCACCCAAAGTGAATCCGCACAC
ATTTCCAGCGATATTAAGCAGGATTCTACTGAAGACCAATGCTCCGCCTG
CAGCTCCACCGAAGTTTAATCCAGCCGACGGCACACAGTACCTTTGCTTC
CTGTGCCTCGAGAAGCCGGAGAGTCGAAAGCGCGTCTATCACATGTTCAT
CACGACTGAAAAGGAGCTGGGAAGCGACTACGCGCACACCAGGAAGTTGT
ACGAGAATCGCAAGGAATTCATATACACCAATAATATATCCGTGGAAACA
GTCTGTGCACGAGCACTGTACCGTCGGGTTCAAAAGAAGTTCACAGATGT
ACAGTGGAACAAGCTGGGCAACGTTTTCGAGACTGACATGGTCGGACGCA
GTGATGTCTGGGGTATATCTAATCGAGTTTACGCTTTGCGTATCGAGGAG
CACGAAAGACTATTTAATTACATTAAGTTTCTGAGCTCAACGAAGTGCTA
ACTAACTACATTCGATTTTAAGTGCCAGTACGAATTGTGATATCTTGTGT
TTATTTTTTATATTAAATCTCTGCTTTGCGGATTGTTTGATTACAGTAAA
AAAAAAAAAAAAAAAAA

GM01014.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42365-RA 848 CG42365-RA 2..848 1..847 4220 99.8 Plus
CG9865-RB 2319 CG9865-RB 2264..2319 849..794 280 100 Minus
CG42380-RB 2319 CG42380-RB 2264..2319 849..794 280 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17553198..17554044 1..847 4205 99.8 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21666748..21667596 1..849 4230 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21667947..21668795 1..849 4230 99.8 Plus
Blast to na_te.dros performed 2019-03-16 11:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\Tom 7060 Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). 732..789 841..784 119 67.2 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 3239..3331 66..160 110 61.9 Plus

GM01014.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:18:57 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17553198..17554044 1..847 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:34 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 1..627 125..751 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:30:26 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 1..627 125..751 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:16:15 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 1..627 125..751 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:05 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG15675-RB 1..627 125..751 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:51 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 1..627 125..751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:56:37 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 2..848 1..847 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:30:26 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 2..848 1..847 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:16:15 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 62..908 1..847 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:05 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG15675-RB 2..848 1..847 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:51 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
CG42365-RA 62..908 1..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:18:57 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21666748..21667594 1..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:18:57 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21666748..21667594 1..847 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:18:57 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21666748..21667594 1..847 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:16:15 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17554253..17555099 1..847 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:37:44 Download gff for GM01014.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21667947..21668793 1..847 99   Plus

GM01014.pep Sequence

Translation from 124 to 750

> GM01014.pep
MESEAQERTAPVSANKSDSSAAPVLNISGRVKSEWNTPRIRGKKKPPAVL
EAPKVNPHTFPAILSRILLKTNAPPAAPPKFNPADGTQYLCFLCLEKPES
RKRVYHMFITTEKELGSDYAHTRKLYENRKEFIYTNNISVETVCARALYR
RVQKKFTDVQWNKLGNVFETDMVGRSDVWGISNRVYALRIEEHERLFNYI
KFLSSTKC*

GM01014.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13257-PA 455 GF13257-PA 270..455 24..208 663 67.2 Plus
Dana\GF13257-PA 455 GF13257-PA 197..251 90..144 152 47.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:18:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22127-PA 208 GG22127-PA 1..207 1..207 970 85 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42365-PA 208 CG15675-PB 1..208 1..208 1095 100 Plus
CG42364-PB 202 CG42364-PB 1..200 1..206 448 45.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10799-PA 208 GL10799-PA 1..207 1..207 517 50.2 Plus
Dper\GL25192-PA 208 GL25192-PA 1..207 1..207 491 48.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24493-PA 208 GA24493-PA 1..207 1..207 524 50.2 Plus
Dpse\GA23722-PA 208 GA23722-PA 1..207 1..207 496 49.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15850-PA 449 GM15850-PA 246..448 5..207 1005 91.1 Plus
Dsec\GM15850-PA 449 GM15850-PA 192..245 90..143 152 46.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:18:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11612-PA 447 GD11612-PA 244..446 5..207 988 90.6 Plus
Dsim\GD11612-PA 447 GD11612-PA 190..243 90..143 150 46.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19016-PA 203 GK19016-PA 3..202 7..207 427 46.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12210-PA 208 GE12210-PA 1..207 1..207 944 83.6 Plus

GM01014.hyp Sequence

Translation from 124 to 750

> GM01014.hyp
MESEAQERTAPVSANKSDSSAAPVLNISGRVKSEWNTPRIRGKKKPPAVL
EAPKVNPHTFPAILSRILLKTNAPPAAPPKFNPADGTQYLCFLCLEKPES
RKRVYHMFITTEKELGSDYAHTRKLYENRKEFIYTNNISVETVCARALYR
RVQKKFTDVQWNKLGNVFETDMVGRSDVWGISNRVYALRIEEHERLFNYI
KFLSSTKC*

GM01014.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG42365-PA 208 CG15675-PB 1..208 1..208 1095 100 Plus
CG42364-PB 202 CG42364-PB 1..200 1..206 448 45.1 Plus