Clone GM01233 Report

Search the DGRC for GM01233

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:12
Well:33
Vector:pBS SK-
Associated Gene/TranscriptInt6-RA
Protein status:GM01233.pep: gold
Preliminary Size:1715
Sequenced Size:1590

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9677 2001-01-01 Release 2 assignment
CG9677 2002-12-11 Blastp of sequenced clone
CG9677 2003-01-01 Sim4 clustering to Release 3
Int6 2008-04-29 Release 5.5 accounting
Int6 2008-08-15 Release 5.9 accounting
Int6 2008-12-18 5.12 accounting

Clone Sequence Records

GM01233.complete Sequence

1590 bp (1590 high quality bases) assembled on 2002-12-11

GenBank Submission: AF132551

> GM01233.complete
TATTTCCACACTCTGGTAACTCTGAGCGGGCGTCACTCTTTTCGTCTCTG
GGCACACTGTCTGCCCTCGCACGCGTATTTTTCTGCCGATTTTGCGTGTA
AATTTAATTGTGAAAACATAGTAAAACAGCTGCAATCATGGCCAATTTCG
ATCTGACACGCATCAATTGCCAGTTTTTGGACAGGCATTTGACCTTCCCG
CTGCTGGAGTTCTTGTGCGGCAAGGAGATCTACAACCAGCAGGAGCTGCT
GGAGTACATTTTGGAGACGGTGAACAAGACGAACATGATCGATTACACGA
TGGACACCCGCAAGCGTCTCAATCTCAGCCAGGAGATGCCCGAGGAGCTC
GTGCAGCGCAAGGCGGAGGTCCTGGCCACGCTTAAGCAGCTGCAGAACGA
GGTGGCACCCATCATGAAGGCCACCGACATTCTTAAGAACGGTGAGAGCA
TGAAGGACTCGAAGACCTTCGTCAACGCCCTTCAGAAGGACTACAATTTT
AAGGTGGAGCACCTGGAGAGCGCCTACAAGCTGGCCAAGTACCTCTACGA
GTGCGGCAACTATCAGGAGTCCACCTCTTACCTGTACTTCTGCCTCATCG
TCATGTCGCCCAACGACAAGAACTACCTTAATGTGCTGTGGGGCAAGCTG
GCCGCCGAGATTCTGACCCTCAACTGGAACACTGCTCTGGAGGATCTGAC
GCGTTTGCGCGACTACATTGACAACGCCAACTTCAGCACCATCCAGGCCC
TGCAGCAACGCACCTGGCTGATCCACTGGTCGGTCCTGGTCTTCTTCAAT
CACCCCAAGGGACGCGATCTCATTATTGAGATGTTCCTGTACAAGCCCCT
GTATTTGAACGCCATTCAGACAATGTGTCCGCACATCATGCGTTACTTGG
CCACCGCCGTAGTCATCAACCGCACCCGCCGCAATGCTCTAAAGGATTTG
ATCAAGGTGATCCAACAGGAGTCGTACACGTACCGCGATCCCATCACCGA
GTTTCTGGAGTGTCTGTACGTGAACTTTGATTTCGAGGGAGCGCGTCTGA
AGCTGCACGAGTGCCAGACGGTGATCCTCAACGACTTCTTCATCGTGGCC
TGCCTGAATGAGTTCGTGGAGGATGCCCGCTTGATGATCTTCGAGACATT
CTGCCGCATCCACCAGTGCATCACCATCAGCATGCTGGCCGATAAGCTGA
ACATGAAGCCCAACGAGGCTGAGTGCTGGATCGTCAACCTTATCCGCAAT
GCCCGTCTGAATGCCAAGATCGATTCGAAACTGGGTCATGTGGTGATGGG
CACCCAGCCCTTGAGTCCCTATCAGCAGCTGGTGGAGAAGATCGACTCGC
TGTCCATGCGGTCGGAGCATTTGGCAGGTTTGATTGAGCGCAAGAGCAAG
CAGAAGCAGAATCAGGAGTCGGCCGACTCCTGGAAGTACTACTAGTTGCT
GACTTTTTATCCACAATTAAGTTAAGACTCTTTGTACCCTTTAAAAACCG
ATGATTGCGCGCAGTCGAGCGAATAAATTAACATCTTACTCATTCGCTCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GM01233.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-RA 1665 Int6-RA 88..1633 6..1551 7715 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:55:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16774818..16775748 1549..619 4655 100 Minus
chr3L 24539361 chr3L 16775833..16776227 620..226 1975 100 Minus
chr3L 24539361 chr3L 16776320..16776543 227..4 1120 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:13:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16785240..16786172 1551..619 4665 100 Minus
3L 28110227 3L 16786257..16786651 620..226 1975 100 Minus
3L 28110227 3L 16786744..16786965 227..6 1095 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16778340..16779272 1551..619 4665 100 Minus
3L 28103327 3L 16779357..16779751 620..226 1975 100 Minus
3L 28103327 3L 16779844..16780065 227..6 1095 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 11:55:55 has no hits.

GM01233.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:57:14 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16774818..16775746 621..1549 100 <- Minus
chr3L 16775833..16776225 228..620 100 <- Minus
chr3L 16776320..16776544 1..227 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:50 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1308 138..1445 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:22 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1308 138..1445 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:13:42 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1308 138..1445 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:55 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1308 138..1445 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:20 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1308 138..1445 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:35 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 20..1568 1..1549 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:21 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 20..1568 1..1549 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:13:42 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1520 30..1549 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:55 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 20..1568 1..1549 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:20 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
Int6-RA 1..1520 30..1549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:57:14 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16785242..16786170 621..1549 100 <- Minus
3L 16786257..16786649 228..620 100 <- Minus
3L 16786744..16786967 1..227 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:57:14 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16785242..16786170 621..1549 100 <- Minus
3L 16786257..16786649 228..620 100 <- Minus
3L 16786744..16786967 1..227 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:57:14 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16785242..16786170 621..1549 100 <- Minus
3L 16786257..16786649 228..620 100 <- Minus
3L 16786744..16786967 1..227 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:13:42 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16778342..16779270 621..1549 100 <- Minus
arm_3L 16779357..16779749 228..620 100 <- Minus
arm_3L 16779844..16780067 1..227 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:42 Download gff for GM01233.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16779844..16780067 1..227 98   Minus
3L 16778342..16779270 621..1549 100 <- Minus
3L 16779357..16779749 228..620 100 <- Minus

GM01233.pep Sequence

Translation from 137 to 1444

> GM01233.pep
MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNM
IDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILK
NGESMKDSKTFVNALQKDYNFKVEHLESAYKLAKYLYECGNYQESTSYLY
FCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNANFS
TIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHI
MRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFE
GARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQCITISML
ADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVE
KIDSLSMRSEHLAGLIERKSKQKQNQESADSWKYY*

GM01233.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10503-PA 434 GF10503-PA 1..434 1..435 2300 98.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15850-PA 435 GG15850-PA 1..435 1..435 2331 99.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15221-PA 434 GH15221-PA 1..434 1..435 2284 97.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
eIF3e-PA 435 CG9677-PA 1..435 1..435 2273 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11931-PA 434 GI11931-PA 1..434 1..435 2300 98.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16190-PA 434 GL16190-PA 1..434 1..435 2295 98.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21959-PA 434 GA21959-PA 1..434 1..435 2291 98.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24367-PA 304 GM24367-PA 10..304 141..435 1482 94.6 Plus
Dsec\GM24367-PA 304 GM24367-PA 1..32 1..32 171 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12442-PA 435 GD12442-PA 1..435 1..435 2335 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12157-PA 434 GJ12157-PA 1..434 1..435 2296 98.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12672-PA 434 GK12672-PA 1..434 1..435 2285 98.2 Plus
Dwil\GK22114-PA 434 GK22114-PA 1..434 1..435 2224 94.9 Plus
Dwil\GK23369-PA 370 GK23369-PA 1..275 1..275 1393 94.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Int6-PA 435 GE22189-PA 1..435 1..435 2331 99.8 Plus

GM01233.hyp Sequence

Translation from 137 to 1444

> GM01233.hyp
MANFDLTRINCQFLDRHLTFPLLEFLCGKEIYNQQELLEYILETVNKTNM
IDYTMDTRKRLNLSQEMPEELVQRKAEVLATLKQLQNEVAPIMKATDILK
NGESMKDSKTFVNALQKDYNFKVEHLESAYKLAKYLYECGNYQESTSYLY
FCLIVMSPNDKNYLNVLWGKLAAEILTLNWNTALEDLTRLRDYIDNANFS
TIQALQQRTWLIHWSVLVFFNHPKGRDLIIEMFLYKPLYLNAIQTMCPHI
MRYLATAVVINRTRRNALKDLIKVIQQESYTYRDPITEFLECLYVNFDFE
GARLKLHECQTVILNDFFIVACLNEFVEDARLMIFETFCRIHQCITISML
ADKLNMKPNEAECWIVNLIRNARLNAKIDSKLGHVVMGTQPLSPYQQLVE
KIDSLSMRSEHLAGLIERKSKQKQNQESADSWKYY*

GM01233.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
Int6-PA 435 CG9677-PA 1..435 1..435 2273 100 Plus