BDGP Sequence Production Resources |
Search the DGRC for GM01240
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 12 |
Well: | 40 |
Vector: | pBS SK- |
Associated Gene/Transcript | CG13900-RB |
Protein status: | GM01240.pep: wuzgold |
Preliminary Size: | 2778 |
Sequenced Size: | 2511 |
Gene | Date | Evidence |
---|---|---|
CG13900 | 2001-01-01 | Release 2 assignment |
CG13900 | 2001-11-29 | Blastp of sequenced clone |
CG13900 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13900 | 2008-04-29 | Release 5.5 accounting |
CG13900 | 2008-08-15 | Release 5.9 accounting |
CG13900 | 2008-12-18 | 5.12 accounting |
2511 bp (2511 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069239
> GM01240.complete AAAACACGAAAAGAACAATCATGTTGAGACACTATGTGTCCTGCAGTGCT GAGCTTCAAAATCAACCAAAAGCCTTATCCTCGTTTACTTAACTTCACAA CTAATGAATACATTTTATGTTTGCAGACTGGGGAGCTGAACGAGTACACG GAACGTTCCGAGATGCCAGCTGAGATTATGTGCATGGCTTTGGGAACTGT TCCGGAGGGCGAGCAGAGATCCTGGTTCTTGGCCGTCGGCCTGGCGGATA ATACAGTGCGCATCTTATCGCTGGATCCCAACAACTGTCTCACTCCCTGC TCCATGCAGGCCCTGCCTTCGCCAGCCGAATCCCTTTGCCTGGTCGAAAT GGGTCACACGGAGAGCACGACTCAGGGAGGTTTGGATGACGATGCTCCCG CTCAGCGCAGTGGCAACAATAAGGGAACCATTTACCTAAACATTGGATTG AGCAACGGTGTCCTGCTGAGAACTGTGCTCGATCCTGTTTCCGGAGATTT GGCAGACACCCGAACGAGATATTTGGGTTCCCGACCCGTAAAGCTCTTCC GGATCAAGATGCAGGGATCCGAAGCGGTGCTGGCCATGTCCAGTCGAACC TGGCTGTCGTACTACCACCAAAATCGATTCCATTTGACGCCTCTGTCTTA TGAAACCCTTGAGTATGCTTCTGGCTTCTCGAGCGAGCAGTGCAGCGAAG GTATCGTGGCTATATCCACCAACACCTTGAGGATCTTGGCCCTGGAGAAA CTGGGAGCCGTCTTCAATCAAGTAGCGTTCCCCTTGCAGTACACTCCACG TACCTTTGTAATCCATCCGGATACGGGACGCATGCTAATTGCCGAAACCG ATCACAACGCCTACACAGAGGATACGAAGAGTGCTCGAAAGGAGCAAATG GCGGAGGAGATGCGCAGTGCAGCTGGCGATGAGGAGAGGGAGTTGGCCCG CGAAATGGCCAATGCTTTCATCAACGAAGTCCTTCCCGAGGACGTGTTTT CGTCGCCCAAAGCAGGACTAGGTCTTTGGGCCTCGCAAATCCGTTGCCTG GACGCCATGCATGGTCAGACGATGTTCAGTGTGCCGCTCACCCAAAACGA GGCCATTATGTCGATGGCCATGCTGAAGTTCTCCATAGCGGCTGATGGCC GGTACTACCTGGCCGTGGGAATCGCTAAGGATCTGCAGCTGAATCCTAGG ATTTCGCAAGGCGGCTGCATAGATATCTACAAAATAGATCCCACTTGCTC CAGTCTGGAATTCATGCACCGCACGGACATTGACGAGATTCCTGGAGCCC TGTGCGGCTTCCAGGGTCGTCTACTAGCTGGCTGCGGTCGAATGTTGCGA ATCTACGATTTCGGCAAGAAGAAAATGCTGCGCAAATGCGAGAACAAGCA CATTCCCTATCAGATTGTCAATATCCAAGCCATGGGTCATCGTGTTTACG TGTCGGATGTTCAGGAATCAGTATTTTTCATACGCTATCGTCGCGCGGAG AACCAGCTGATTATATTTGCCGATGACACGCATCCTCGTTGGGTGACGGC CACCACCTTGCTGGACTACGATACCATAGCCATCGCCGATAAGTTTGGCA ACCTGAGCATTCAGCGATTGCCCCACTCCGTAACGGACGATGTGGACGAG GATCCAACGGGCACCAAGTCTCTGTGGGATCGTGGCCTGCTGTCAGGTGC TTCGCAGAAGTCGGAGAACATTTGCTCCTTCCATGTGGGCGAGATAATCA TGTCGCTGCAGAAGGCAACGCTAATTCCTGGAGGATCGGAAGCCCTTATA TACGCCACGCTAAGTGGCACTGTTGGAGCATTTGTTCCGTTCACCAGTCG CGAGGACTACGACTTCTTCCAACATCTGGAGATGCACATGCGCAATGAGA ATCCCCCACTCTGTGGACGCGACCATCTCAGCTACAGGAGCTCGTATTAT CCGGTCAAAAACGTACTCGACGGCGATCTCTGCGAGCAGTATCTGTCCAT TGAGGCAGCCAAGCAGAAGAGCATAGCTGGCGACATGTTCCGCACACCCA ACCAGATCTGCAAGAAACTGGAGGATATTCGCACGCGATACGCCTTCTAA GATGCCAGCAAAGGAACACTTCAATATCATGGAAACTTTTCTTTTTTAAC TAGTTTTCGTGGGCAAAACCAACAAACGCTGCACCTAAAACGTTTTGAAG TTTAATCGGAAAATTCCAATGACCATTATAGACCATTACATTAGGAACAC TTTCAAGATCTTCTTACGTTGGGGTATGTTGTGGCGCTTAATTCTAACTA AATTATACACTAGATCGTACATCTATACTAACTGCACATTAAATCACCGA TCAACCACTAATCGACTGCCGCATATTTAAACTAGCATATAAGTCAGTGC AAACTCGACAAATTGCACAACCTAAATATAAACCCCTAATCATAAGCAAT TTTTAACTTAAATAAAAGTAACTGAAAACGAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13900.d | 3144 | CG13900.d | 594..3070 | 1..2479 | 12040 | 99.1 | Plus |
CG13900-RB | 2606 | CG13900-RB | 56..2532 | 1..2479 | 12040 | 99.1 | Plus |
CG13900.c | 3325 | CG13900.c | 387..2586 | 1..2200 | 10700 | 99 | Plus |
CG13900.c | 3325 | CG13900.c | 3122..3289 | 2312..2479 | 840 | 100 | Plus |
CG13900.c | 3325 | CG13900.c | 3006..3063 | 2256..2313 | 290 | 100 | Plus |
CG13900.c | 3325 | CG13900.c | 2766..2827 | 2194..2257 | 250 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 827657..829757 | 2101..1 | 10130 | 98.8 | Minus |
chr3L | 24539361 | chr3L | 826506..826660 | 2466..2312 | 760 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 826720..826777 | 2313..2256 | 290 | 100 | Minus |
chr3L | 24539361 | chr3L | 827426..827479 | 2153..2100 | 270 | 100 | Minus |
chr3L | 24539361 | chr3L | 827202..827250 | 2200..2152 | 245 | 100 | Minus |
chr3L | 24539361 | chr3L | 826961..827022 | 2257..2194 | 240 | 95.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
snoRNA:Me5.8S-G74-RA | 71 | CR34695-RA | 16..71 | 1..56 | 280 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 827877..829977 | 2101..1 | 10220 | 99.1 | Minus |
3L | 28110227 | 3L | 826720..826887 | 2479..2312 | 840 | 100 | Minus |
3L | 28110227 | 3L | 826946..827003 | 2313..2256 | 290 | 100 | Minus |
3L | 28110227 | 3L | 827646..827699 | 2153..2100 | 270 | 100 | Minus |
3L | 28110227 | 3L | 827182..827243 | 2257..2194 | 240 | 95.3 | Minus |
3L | 28110227 | 3L | 827423..827471 | 2200..2152 | 230 | 98 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 827877..829977 | 2101..1 | 10220 | 99 | Minus |
3L | 28103327 | 3L | 826720..826887 | 2479..2312 | 840 | 100 | Minus |
3L | 28103327 | 3L | 826946..827003 | 2313..2256 | 290 | 100 | Minus |
3L | 28103327 | 3L | 827646..827699 | 2153..2100 | 270 | 100 | Minus |
3L | 28103327 | 3L | 827182..827243 | 2257..2194 | 250 | 95.3 | Minus |
3L | 28103327 | 3L | 827423..827471 | 2200..2152 | 230 | 97.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 826720..826775 | 2258..2313 | 100 | <- | Minus |
chr3L | 826961..827015 | 2201..2257 | 96 | <- | Minus |
chr3L | 827202..827248 | 2154..2200 | 100 | <- | Minus |
chr3L | 827426..827477 | 2102..2153 | 100 | <- | Minus |
chr3L | 826488..826658 | 2314..2480 | 97 | <- | Minus |
chr3L | 827657..829757 | 1..2101 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RB | 1..2067 | 34..2100 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RB | 1..2067 | 34..2100 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RA | 1702..3684 | 117..2100 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RB | 1..2067 | 34..2100 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RA | 1702..3684 | 117..2100 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
snoRNA:Me5.8S-G74-RA | 16..71 | 1..56 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RB | 1..2477 | 1..2480 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RB | 1..2477 | 1..2480 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RA | 1880..4239 | 117..2479 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RB | 1..2477 | 1..2480 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13900-RA | 1863..4222 | 117..2479 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 827182..827236 | 2201..2257 | 96 | <- | Minus |
3L | 827423..827469 | 2154..2200 | 97 | <- | Minus |
3L | 827646..827697 | 2102..2153 | 100 | <- | Minus |
3L | 827877..829977 | 1..2101 | 99 | Minus | |
3L | 826719..826885 | 2314..2480 | 99 | <- | Minus |
3L | 826946..827001 | 2258..2313 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 827182..827236 | 2201..2257 | 96 | <- | Minus |
3L | 827423..827469 | 2154..2200 | 97 | <- | Minus |
3L | 827646..827697 | 2102..2153 | 100 | <- | Minus |
3L | 827877..829977 | 1..2101 | 99 | Minus | |
3L | 826719..826885 | 2314..2480 | 99 | <- | Minus |
3L | 826946..827001 | 2258..2313 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 827182..827236 | 2201..2257 | 96 | <- | Minus |
3L | 827423..827469 | 2154..2200 | 97 | <- | Minus |
3L | 827646..827697 | 2102..2153 | 100 | <- | Minus |
3L | 827877..829977 | 1..2101 | 99 | Minus | |
3L | 826719..826885 | 2314..2480 | 99 | <- | Minus |
3L | 826946..827001 | 2258..2313 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 827877..829977 | 1..2101 | 99 | Minus | |
arm_3L | 827182..827236 | 2201..2257 | 96 | <- | Minus |
arm_3L | 827423..827469 | 2154..2200 | 97 | <- | Minus |
arm_3L | 827646..827697 | 2102..2153 | 100 | <- | Minus |
arm_3L | 826719..826885 | 2314..2480 | 99 | <- | Minus |
arm_3L | 826946..827001 | 2258..2313 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 827877..829977 | 1..2101 | 99 | Minus | |
3L | 826719..826885 | 2314..2480 | 99 | <- | Minus |
3L | 826946..827001 | 2258..2313 | 100 | <- | Minus |
3L | 827182..827236 | 2201..2257 | 96 | <- | Minus |
3L | 827423..827469 | 2154..2200 | 97 | <- | Minus |
3L | 827646..827697 | 2102..2153 | 100 | <- | Minus |
Translation from 33 to 2099
> GM01240.hyp MCPAVLSFKINQKPYPRLLNFTTNEYILCLQTGELNEYTERSEMPAEIMC MALGTVPEGEQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAES LCLVEMGHTESTTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLD PVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFH LTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAFP LQYTPRTFVIHPDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDE ERELAREMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSV PLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYK IDPTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLR KCENKHIPYQIVNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTH PRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVDEDPTGTKSLWDR GLLSGASQKSENICSFHVGEIIMSLQKATLIPGGSEALIYATLSGTVGAF VPFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRSSYYPVKNVLDGDLC EQYLSIEAAKQKSIAGDMFRTPNQICKKLEDIRTRYAF*
Translation from 33 to 2099
> GM01240.pep MCPAVLSFKINQKPYPRLLNFTTNEYILCLQTGELNEYTERSEMPAEIMC MALGTVPEGEQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAES LCLVEMGHTESTTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLD PVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFH LTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAFP LQYTPRTFVIHPDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDE ERELAREMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSV PLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYK IDPTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLR KCENKHIPYQIVNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTH PRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVDEDPTGTKSLWDR GLLSGASQKSENICSFHVGEIIMSLQKATLIPGGSEALIYATLSGTVGAF VPFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRSSYYPVKNVLDGDLC EQYLSIEAAKQKSIAGDMFRTPNQICKKLEDIRTRYAF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24063-PA | 1228 | GF24063-PA | 571..1228 | 32..688 | 3498 | 98 | Plus |
Dana\GF17579-PA | 1140 | GF17579-PA | 516..1107 | 26..662 | 259 | 19.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14635-PA | 1227 | GG14635-PA | 571..1227 | 32..688 | 3531 | 98.9 | Plus |
Dere\GG19434-PA | 1140 | GG19434-PA | 516..1107 | 26..662 | 253 | 19.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16029-PA | 1228 | GH16029-PA | 571..1228 | 32..688 | 3441 | 95.7 | Plus |
Dgri\GH18378-PA | 1140 | GH18378-PA | 516..1107 | 26..662 | 249 | 19.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sf3b3-PA | 1227 | CG13900-PA | 549..1227 | 10..688 | 3425 | 97.3 | Plus |
pic-PA | 1140 | CG7769-PA | 516..1118 | 26..673 | 274 | 19 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12293-PA | 1227 | GI12293-PA | 571..1227 | 32..688 | 3470 | 96.7 | Plus |
Dmoj\GI23368-PA | 1140 | GI23368-PA | 516..1105 | 26..660 | 236 | 19.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20829-PA | 1225 | GL20829-PA | 571..1225 | 32..688 | 3339 | 94.4 | Plus |
Dper\GL24391-PA | 1140 | GL24391-PA | 516..1107 | 26..662 | 260 | 20 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12611-PA | 1228 | GA12611-PA | 571..1228 | 32..688 | 3470 | 97 | Plus |
Dpse\GA20574-PA | 1140 | GA20574-PA | 516..1107 | 26..662 | 257 | 19.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14250-PA | 1227 | GM14250-PA | 571..1227 | 32..688 | 3556 | 99.8 | Plus |
Dsec\GM24084-PA | 1140 | GM24084-PA | 516..1107 | 26..662 | 251 | 19.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13507-PA | 1227 | GD13507-PA | 571..1227 | 32..688 | 3553 | 99.7 | Plus |
Dsim\GD18880-PA | 1140 | GD18880-PA | 516..1107 | 26..662 | 260 | 19.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13230-PA | 1229 | GJ13230-PA | 571..1229 | 32..688 | 3452 | 96.7 | Plus |
Dvir\GJ10363-PA | 1140 | GJ10363-PA | 516..1118 | 26..673 | 256 | 19.9 | Plus |