Clone GM01240 Report

Search the DGRC for GM01240

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:12
Well:40
Vector:pBS SK-
Associated Gene/TranscriptCG13900-RB
Protein status:GM01240.pep: wuzgold
Preliminary Size:2778
Sequenced Size:2511

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13900 2001-01-01 Release 2 assignment
CG13900 2001-11-29 Blastp of sequenced clone
CG13900 2003-01-01 Sim4 clustering to Release 3
CG13900 2008-04-29 Release 5.5 accounting
CG13900 2008-08-15 Release 5.9 accounting
CG13900 2008-12-18 5.12 accounting

Clone Sequence Records

GM01240.complete Sequence

2511 bp (2511 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069239

> GM01240.complete
AAAACACGAAAAGAACAATCATGTTGAGACACTATGTGTCCTGCAGTGCT
GAGCTTCAAAATCAACCAAAAGCCTTATCCTCGTTTACTTAACTTCACAA
CTAATGAATACATTTTATGTTTGCAGACTGGGGAGCTGAACGAGTACACG
GAACGTTCCGAGATGCCAGCTGAGATTATGTGCATGGCTTTGGGAACTGT
TCCGGAGGGCGAGCAGAGATCCTGGTTCTTGGCCGTCGGCCTGGCGGATA
ATACAGTGCGCATCTTATCGCTGGATCCCAACAACTGTCTCACTCCCTGC
TCCATGCAGGCCCTGCCTTCGCCAGCCGAATCCCTTTGCCTGGTCGAAAT
GGGTCACACGGAGAGCACGACTCAGGGAGGTTTGGATGACGATGCTCCCG
CTCAGCGCAGTGGCAACAATAAGGGAACCATTTACCTAAACATTGGATTG
AGCAACGGTGTCCTGCTGAGAACTGTGCTCGATCCTGTTTCCGGAGATTT
GGCAGACACCCGAACGAGATATTTGGGTTCCCGACCCGTAAAGCTCTTCC
GGATCAAGATGCAGGGATCCGAAGCGGTGCTGGCCATGTCCAGTCGAACC
TGGCTGTCGTACTACCACCAAAATCGATTCCATTTGACGCCTCTGTCTTA
TGAAACCCTTGAGTATGCTTCTGGCTTCTCGAGCGAGCAGTGCAGCGAAG
GTATCGTGGCTATATCCACCAACACCTTGAGGATCTTGGCCCTGGAGAAA
CTGGGAGCCGTCTTCAATCAAGTAGCGTTCCCCTTGCAGTACACTCCACG
TACCTTTGTAATCCATCCGGATACGGGACGCATGCTAATTGCCGAAACCG
ATCACAACGCCTACACAGAGGATACGAAGAGTGCTCGAAAGGAGCAAATG
GCGGAGGAGATGCGCAGTGCAGCTGGCGATGAGGAGAGGGAGTTGGCCCG
CGAAATGGCCAATGCTTTCATCAACGAAGTCCTTCCCGAGGACGTGTTTT
CGTCGCCCAAAGCAGGACTAGGTCTTTGGGCCTCGCAAATCCGTTGCCTG
GACGCCATGCATGGTCAGACGATGTTCAGTGTGCCGCTCACCCAAAACGA
GGCCATTATGTCGATGGCCATGCTGAAGTTCTCCATAGCGGCTGATGGCC
GGTACTACCTGGCCGTGGGAATCGCTAAGGATCTGCAGCTGAATCCTAGG
ATTTCGCAAGGCGGCTGCATAGATATCTACAAAATAGATCCCACTTGCTC
CAGTCTGGAATTCATGCACCGCACGGACATTGACGAGATTCCTGGAGCCC
TGTGCGGCTTCCAGGGTCGTCTACTAGCTGGCTGCGGTCGAATGTTGCGA
ATCTACGATTTCGGCAAGAAGAAAATGCTGCGCAAATGCGAGAACAAGCA
CATTCCCTATCAGATTGTCAATATCCAAGCCATGGGTCATCGTGTTTACG
TGTCGGATGTTCAGGAATCAGTATTTTTCATACGCTATCGTCGCGCGGAG
AACCAGCTGATTATATTTGCCGATGACACGCATCCTCGTTGGGTGACGGC
CACCACCTTGCTGGACTACGATACCATAGCCATCGCCGATAAGTTTGGCA
ACCTGAGCATTCAGCGATTGCCCCACTCCGTAACGGACGATGTGGACGAG
GATCCAACGGGCACCAAGTCTCTGTGGGATCGTGGCCTGCTGTCAGGTGC
TTCGCAGAAGTCGGAGAACATTTGCTCCTTCCATGTGGGCGAGATAATCA
TGTCGCTGCAGAAGGCAACGCTAATTCCTGGAGGATCGGAAGCCCTTATA
TACGCCACGCTAAGTGGCACTGTTGGAGCATTTGTTCCGTTCACCAGTCG
CGAGGACTACGACTTCTTCCAACATCTGGAGATGCACATGCGCAATGAGA
ATCCCCCACTCTGTGGACGCGACCATCTCAGCTACAGGAGCTCGTATTAT
CCGGTCAAAAACGTACTCGACGGCGATCTCTGCGAGCAGTATCTGTCCAT
TGAGGCAGCCAAGCAGAAGAGCATAGCTGGCGACATGTTCCGCACACCCA
ACCAGATCTGCAAGAAACTGGAGGATATTCGCACGCGATACGCCTTCTAA
GATGCCAGCAAAGGAACACTTCAATATCATGGAAACTTTTCTTTTTTAAC
TAGTTTTCGTGGGCAAAACCAACAAACGCTGCACCTAAAACGTTTTGAAG
TTTAATCGGAAAATTCCAATGACCATTATAGACCATTACATTAGGAACAC
TTTCAAGATCTTCTTACGTTGGGGTATGTTGTGGCGCTTAATTCTAACTA
AATTATACACTAGATCGTACATCTATACTAACTGCACATTAAATCACCGA
TCAACCACTAATCGACTGCCGCATATTTAAACTAGCATATAAGTCAGTGC
AAACTCGACAAATTGCACAACCTAAATATAAACCCCTAATCATAAGCAAT
TTTTAACTTAAATAAAAGTAACTGAAAACGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

GM01240.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900.d 3144 CG13900.d 594..3070 1..2479 12040 99.1 Plus
CG13900-RB 2606 CG13900-RB 56..2532 1..2479 12040 99.1 Plus
CG13900.c 3325 CG13900.c 387..2586 1..2200 10700 99 Plus
CG13900.c 3325 CG13900.c 3122..3289 2312..2479 840 100 Plus
CG13900.c 3325 CG13900.c 3006..3063 2256..2313 290 100 Plus
CG13900.c 3325 CG13900.c 2766..2827 2194..2257 250 95.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 827657..829757 2101..1 10130 98.8 Minus
chr3L 24539361 chr3L 826506..826660 2466..2312 760 99.4 Minus
chr3L 24539361 chr3L 826720..826777 2313..2256 290 100 Minus
chr3L 24539361 chr3L 827426..827479 2153..2100 270 100 Minus
chr3L 24539361 chr3L 827202..827250 2200..2152 245 100 Minus
chr3L 24539361 chr3L 826961..827022 2257..2194 240 95.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
snoRNA:Me5.8S-G74-RA 71 CR34695-RA 16..71 1..56 280 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 827877..829977 2101..1 10220 99.1 Minus
3L 28110227 3L 826720..826887 2479..2312 840 100 Minus
3L 28110227 3L 826946..827003 2313..2256 290 100 Minus
3L 28110227 3L 827646..827699 2153..2100 270 100 Minus
3L 28110227 3L 827182..827243 2257..2194 240 95.3 Minus
3L 28110227 3L 827423..827471 2200..2152 230 98 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 827877..829977 2101..1 10220 99 Minus
3L 28103327 3L 826720..826887 2479..2312 840 100 Minus
3L 28103327 3L 826946..827003 2313..2256 290 100 Minus
3L 28103327 3L 827646..827699 2153..2100 270 100 Minus
3L 28103327 3L 827182..827243 2257..2194 250 95.3 Minus
3L 28103327 3L 827423..827471 2200..2152 230 97.9 Minus
Blast to na_te.dros performed on 2019-03-16 02:25:48 has no hits.

GM01240.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:26:54 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 826720..826775 2258..2313 100 <- Minus
chr3L 826961..827015 2201..2257 96 <- Minus
chr3L 827202..827248 2154..2200 100 <- Minus
chr3L 827426..827477 2102..2153 100 <- Minus
chr3L 826488..826658 2314..2480 97 <- Minus
chr3L 827657..829757 1..2101 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:51 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RB 1..2067 34..2100 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:23:26 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RB 1..2067 34..2100 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:13:02 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 1702..3684 117..2100 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:04 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RB 1..2067 34..2100 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:10:04 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 1702..3684 117..2100 98   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:13:17 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
snoRNA:Me5.8S-G74-RA 16..71 1..56 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:58:33 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RB 1..2477 1..2480 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:23:26 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RB 1..2477 1..2480 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:13:02 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 1880..4239 117..2479 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:04 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RB 1..2477 1..2480 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:10:04 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
CG13900-RA 1863..4222 117..2479 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:54 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
3L 827182..827236 2201..2257 96 <- Minus
3L 827423..827469 2154..2200 97 <- Minus
3L 827646..827697 2102..2153 100 <- Minus
3L 827877..829977 1..2101 99   Minus
3L 826719..826885 2314..2480 99 <- Minus
3L 826946..827001 2258..2313 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:54 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
3L 827182..827236 2201..2257 96 <- Minus
3L 827423..827469 2154..2200 97 <- Minus
3L 827646..827697 2102..2153 100 <- Minus
3L 827877..829977 1..2101 99   Minus
3L 826719..826885 2314..2480 99 <- Minus
3L 826946..827001 2258..2313 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:26:54 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
3L 827182..827236 2201..2257 96 <- Minus
3L 827423..827469 2154..2200 97 <- Minus
3L 827646..827697 2102..2153 100 <- Minus
3L 827877..829977 1..2101 99   Minus
3L 826719..826885 2314..2480 99 <- Minus
3L 826946..827001 2258..2313 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:13:02 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 827877..829977 1..2101 99   Minus
arm_3L 827182..827236 2201..2257 96 <- Minus
arm_3L 827423..827469 2154..2200 97 <- Minus
arm_3L 827646..827697 2102..2153 100 <- Minus
arm_3L 826719..826885 2314..2480 99 <- Minus
arm_3L 826946..827001 2258..2313 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:26:29 Download gff for GM01240.complete
Subject Subject Range Query Range Percent Splice Strand
3L 827877..829977 1..2101 99   Minus
3L 826719..826885 2314..2480 99 <- Minus
3L 826946..827001 2258..2313 100 <- Minus
3L 827182..827236 2201..2257 96 <- Minus
3L 827423..827469 2154..2200 97 <- Minus
3L 827646..827697 2102..2153 100 <- Minus

GM01240.hyp Sequence

Translation from 33 to 2099

> GM01240.hyp
MCPAVLSFKINQKPYPRLLNFTTNEYILCLQTGELNEYTERSEMPAEIMC
MALGTVPEGEQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAES
LCLVEMGHTESTTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLD
PVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFH
LTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRTFVIHPDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDE
ERELAREMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSV
PLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYK
IDPTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLR
KCENKHIPYQIVNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTH
PRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVDEDPTGTKSLWDR
GLLSGASQKSENICSFHVGEIIMSLQKATLIPGGSEALIYATLSGTVGAF
VPFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRSSYYPVKNVLDGDLC
EQYLSIEAAKQKSIAGDMFRTPNQICKKLEDIRTRYAF*

GM01240.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13900-PA 1227 CG13900-PA 549..1227 10..688 3425 97.3 Plus
pic-PA 1140 CG7769-PA 516..1118 26..673 274 19 Plus

GM01240.pep Sequence

Translation from 33 to 2099

> GM01240.pep
MCPAVLSFKINQKPYPRLLNFTTNEYILCLQTGELNEYTERSEMPAEIMC
MALGTVPEGEQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAES
LCLVEMGHTESTTQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLD
PVSGDLADTRTRYLGSRPVKLFRIKMQGSEAVLAMSSRTWLSYYHQNRFH
LTPLSYETLEYASGFSSEQCSEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRTFVIHPDTGRMLIAETDHNAYTEDTKSARKEQMAEEMRSAAGDE
ERELAREMANAFINEVLPEDVFSSPKAGLGLWASQIRCLDAMHGQTMFSV
PLTQNEAIMSMAMLKFSIAADGRYYLAVGIAKDLQLNPRISQGGCIDIYK
IDPTCSSLEFMHRTDIDEIPGALCGFQGRLLAGCGRMLRIYDFGKKKMLR
KCENKHIPYQIVNIQAMGHRVYVSDVQESVFFIRYRRAENQLIIFADDTH
PRWVTATTLLDYDTIAIADKFGNLSIQRLPHSVTDDVDEDPTGTKSLWDR
GLLSGASQKSENICSFHVGEIIMSLQKATLIPGGSEALIYATLSGTVGAF
VPFTSREDYDFFQHLEMHMRNENPPLCGRDHLSYRSSYYPVKNVLDGDLC
EQYLSIEAAKQKSIAGDMFRTPNQICKKLEDIRTRYAF*

GM01240.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24063-PA 1228 GF24063-PA 571..1228 32..688 3498 98 Plus
Dana\GF17579-PA 1140 GF17579-PA 516..1107 26..662 259 19.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14635-PA 1227 GG14635-PA 571..1227 32..688 3531 98.9 Plus
Dere\GG19434-PA 1140 GG19434-PA 516..1107 26..662 253 19.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16029-PA 1228 GH16029-PA 571..1228 32..688 3441 95.7 Plus
Dgri\GH18378-PA 1140 GH18378-PA 516..1107 26..662 249 19.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Sf3b3-PA 1227 CG13900-PA 549..1227 10..688 3425 97.3 Plus
pic-PA 1140 CG7769-PA 516..1118 26..673 274 19 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12293-PA 1227 GI12293-PA 571..1227 32..688 3470 96.7 Plus
Dmoj\GI23368-PA 1140 GI23368-PA 516..1105 26..660 236 19.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20829-PA 1225 GL20829-PA 571..1225 32..688 3339 94.4 Plus
Dper\GL24391-PA 1140 GL24391-PA 516..1107 26..662 260 20 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12611-PA 1228 GA12611-PA 571..1228 32..688 3470 97 Plus
Dpse\GA20574-PA 1140 GA20574-PA 516..1107 26..662 257 19.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14250-PA 1227 GM14250-PA 571..1227 32..688 3556 99.8 Plus
Dsec\GM24084-PA 1140 GM24084-PA 516..1107 26..662 251 19.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13507-PA 1227 GD13507-PA 571..1227 32..688 3553 99.7 Plus
Dsim\GD18880-PA 1140 GD18880-PA 516..1107 26..662 260 19.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13230-PA 1229 GJ13230-PA 571..1229 32..688 3452 96.7 Plus
Dvir\GJ10363-PA 1140 GJ10363-PA 516..1118 26..673 256 19.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16677-PA 1273 GK16677-PA 616..1273 32..688 3445 96.7 Plus
Dwil\GK22405-PA 1140 GK22405-PA 516..1107 26..662 265 19.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20993-PA 1227 GE20993-PA 571..1227 32..688 3539 99.4 Plus
Dyak\GE26244-PA 1140 GE26244-PA 516..1107 26..662 251 19.5 Plus