Clone GM01253 Report

Search the DGRC for GM01253

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:12
Well:53
Vector:pBS SK-
Associated Gene/TranscriptCG31320-RA
Protein status:GM01253.pep: gold
Preliminary Size:3431
Sequenced Size:3424

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31320 2003-01-01 Sim4 clustering to Release 3
CG31320 2003-03-24 Blastp of sequenced clone
CG31320 2008-04-29 Release 5.5 accounting
CG31320 2008-08-15 Release 5.9 accounting
CG31320 2008-12-18 5.12 accounting

Clone Sequence Records

GM01253.complete Sequence

3424 bp (3424 high quality bases) assembled on 2003-03-24

GenBank Submission: BT006021

> GM01253.complete
TGAAATAAACAAAAATAAATGAGAGAATATAACGAAAACTGTTATCTTTT
GTGTAGCCATAGCAACCGGTGTGTTTGACGCTTGAGTAACGTTTAAACAT
TCTCGTTTTGCAGCCTAGAAATCTATGAAAAGCAGCTAAACAAAAATCAC
ACTCGCGCAGCTTGAGAAACCGGCGAAAAAAAGTATCTTAAAAATTCTGG
ATTGGAAGATTGAATGTGGAGAATTCACTGCAACTAATACCTTTACTACG
AAAAACAAAAATCCACAACAGCAAATGGCAAAAATATCTAAAACGGAATT
TTACATTTAAAAACCACTAAAAAGAAGCTAAGAACTAAGGAAAAAAAAGA
TTTCATAAAAGAATCAGAAATCCTTCGCAAGTAAGATACAGTTTTAAAAT
TAAGAAGATATTAAATACATATACAGCAGCTCAAAGCAAGAAAAACTGTA
ATTATATATTCAATACTACTTTAGCAAGTATGCCTTAAAAAAATATAAAA
GTATAAATTCATATTTTCATATTTATTTACGAAATCAATTGCTGAACACT
TTGCAATATCTTGATCAATAATTTTCAAAAGAATTATTAAATAAATTCCA
AAATGGGCTTCGATATTGATAGCCAGAAGATTTGCTCGGATCTGGAGAGC
TCCGATCGACGTCTGAAGACCACAGTTCTGGATGAACTGCTCGATAAGTG
CAAAGAAGCAACAAATTCCGAGAGTGCTGACAAAATAGCCGATGTTTTCG
ATAAACTGTATCTGCATCTACTGAAATGCTACGAAGATAGATTCGAAAGC
GTTCGCTCTAAAGCCATTCAAGTGGTAAGCGCTTTTTTGTCAAGTCTTCC
GCCCACGGATTTCCACCTGATGAATGTGGTTTCAACTTTGGCGGAGCGGA
TGGGAAAGGCCGAAACCGTGGAGCCCAGCGAGGAAATCCGTCTCCTCTAC
ATTGCGCAACTGAATTTGATGATTTGCCTGTATGAGAAAATGGAAAATGT
GGGCGTCTTCAGGGAGTGCTATCCCTTGGTGGTGAAGATTCTGATTAAGT
CTATCAAGGATGACTATCCGGTGGTGCAGCGCGAAGGATGCTCCGCTGTG
GTTACTCTCTCTCGTTTGGCTGATACCCAGGAGTTTCGTCCCTTTACAGA
ATCCATTCTGCTACCTCTTTACACAATGTTGAATCACAAGCATGCACAGG
CCAGGATATCGGCCATTCAAGCCATCGCCAGGCTGAGTCTACACATGGAC
GCCAGTGGCGATGCAATGAGAAGGCTCTTCAATGAGGTGTCGCCCCTACT
TATGGACACCATGCCATTGGTTCGCCGTGAAGTCGGTCAGATGGGCATTC
TTATGCTAATGGAACTATTGGATCGCTATTCCTTCTTTGAGAGAATTCTA
CCGCTGGTTCTTTGTTGCCTAAAAGACGAATCTCCGGAGGTTCTGAACCA
CATATACCCGCAATGGCTCAAGTGTGGCATACAATATTTCAATGAAAACG
AAGCCGAGTTGTCACAACAGGAAATAAGCGATTTGCCCGTTGAGAATTAC
CCGAAAGATGTCAAGCGACCTACGATAGGATGTCGTGGATTGGTGCAACG
ATCTTTGCGACTCTTGCAACTTATTACCCGGGAAACAAGCGACTGGAAGG
ATAATGTACGCCTCCACGCCCTGAAGCTACTCTATCAATTTGTTTTGCAC
GCCGAGGCTGCCATGACTGCCAAGTTCTTTGAGATCTACGGGGATTTGGC
CCATGCCTGTATCGATCATGTGGCAGAAGTCAATGCGGAAGCCGCCAAGG
TGGCGGATTTGATGGGTCGTCTGTTGTCCTACGATGCCTGGATAGATCAC
GGCTTCGATGGCCTGGAACGAAATGCCCGTGAGTCTTATATGAGATGTTT
CTACCACATGTTCACCGCCTCCCTCGGTGGCACCTATGAGCAGTTAATGC
GCTTGGCCAAGCTTCTTCGCTGCACCGATTACTCGCATACTCTGAAGCCA
GGTTTCCAGCATTACATACTCAAACTCTTGAATACCATTGTGGATAAAAC
GCTGAAGATCAATGCGGGGCAAAACGAGCTGGAAGATCTCTACGAATCGG
TATATGTATGTGCCATTAAAGTAATGGCACTTTCAAGTTCACTCGAAAAT
GTCGGAGACGAAGATGTTAATTTCGGTCAAACGCTGATCGAAAAAATGGT
CAAACTTCTCAACACTTCGGTTCCTAAAATTCACGAACGTTGGTTTCATT
TGGCCTTGCAGGATGTAATAAATCTGGATGCGGCCTTAGAGGATAATGCT
GAACCAGTGATGCTGTTGAATGGATTGATAAATATGTGCCACATTCGAGC
CACCTATGTGCACGATCTTATCGAGAAAGTTAAGATCGTCTTTCAGCATT
GCTGCGATAGTGCTCAAGTTAAAATCTTTAGCAGTCTCTCGTTAGCAACT
CTATTTTGGTCGAAAACGATGAATGTAGAACGTGAGTCCAGCACCCAGAT
GTTAAGTGAATTCGTATCTCAGATTGTGGAACCCTATCTGACCTGGAAGG
CTGGATCCAATGCCGAGGCCATGAGATCCCTGGCCATGGCTACTCTGTGT
GCTTTGGCTCAGGGAGCCGAGTCGGAATCTGTGGAAGTACTACCCTCTCT
GGCCAAATATATGCCTAGCCTGCTCGAAGATCGCAATGTCACCACACGTC
ATTATGCGATCAAGGCGGTTGTATATTTCCGGGAAATGTCTGTGGAAGAT
TTGAAGCCACTAGCTTATGCCACCATGCAGCGCATGGATGATCCTTCGGC
TGGCATTCGTATCCTGGCTGCTTTGGCGATGGGTAAATTGAAGCCCAAGT
TCGCCGAGACGGATACTGAAGAGAATTATGAAAAGGAGGTGTGGGATGCT
ATTGTTAAACGCGCCATGGATCTGCTGTTGCTCTATCACGAAAGTCCCGA
AAAGGATATGAGGGCAGCTGTAGCCGTTACCCTAAAGGTCTTGGCCAAAT
CTCATCCAGAAGCCTGGGAGGAACGCTATCAACGGGCTTTACCTATGGCT
CAGAAAAAGGATTTACTCACCGAACTCTATGATAAGCTAACTATCAATGA
AGATTCACATACTGAGGTTACGTCAGCATCACAAGATTAGGATACACTTT
ACATATTAATTAAAAATGAATTAGATTTATTTTACCAATTTGTGTTGCAA
ATTAAGCTTCTTAGTAAACCAATTTAAATTTATATTGAAGATTAACAATT
TTATAATCTCTTACAAACTTTAGCTTATATTCGGGTAATTGATTTAATTG
ACCTATATACATATATCCACTTCTCAGAACGAAGAACTGTTGTAAACAAA
AGCTCCAAACTATAAAGTAAAATCTGCTCAAGCGAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

GM01253.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31320-RA 3384 CG31320-RA 1..3384 1..3384 16920 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 10183169..10186543 3384..1 16370 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:13:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14358352..14361739 3388..1 16940 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 14099183..14102570 3388..1 16940 100 Minus
Blast to na_te.dros performed 2019-03-15 19:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 990..1287 176..477 134 54 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6688..6812 3129..3250 125 61.8 Plus
Tc3 1743 Tc3 TC3 1743bp 238..310 3201..3128 124 64.9 Minus

GM01253.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:25:18 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 10183169..10186543 1..3384 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:52 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 1..2538 603..3140 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:05 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 1..2538 603..3140 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:49:59 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 1..2538 603..3140 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:37:32 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 1..2538 603..3140 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:51 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 1..2538 603..3140 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:57:23 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 1..3384 1..3384 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:04 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 1..3384 1..3384 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:49:59 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 48..3431 1..3384 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:37:32 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 1..3384 1..3384 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:51 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
CG31320-RA 48..3431 1..3384 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:18 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14358356..14361739 1..3384 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:18 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14358356..14361739 1..3384 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:25:18 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14358356..14361739 1..3384 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:49:59 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10184078..10187461 1..3384 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:07:39 Download gff for GM01253.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14099187..14102570 1..3384 100   Minus

GM01253.pep Sequence

Translation from 602 to 3139

> GM01253.pep
MGFDIDSQKICSDLESSDRRLKTTVLDELLDKCKEATNSESADKIADVFD
KLYLHLLKCYEDRFESVRSKAIQVVSAFLSSLPPTDFHLMNVVSTLAERM
GKAETVEPSEEIRLLYIAQLNLMICLYEKMENVGVFRECYPLVVKILIKS
IKDDYPVVQREGCSAVVTLSRLADTQEFRPFTESILLPLYTMLNHKHAQA
RISAIQAIARLSLHMDASGDAMRRLFNEVSPLLMDTMPLVRREVGQMGIL
MLMELLDRYSFFERILPLVLCCLKDESPEVLNHIYPQWLKCGIQYFNENE
AELSQQEISDLPVENYPKDVKRPTIGCRGLVQRSLRLLQLITRETSDWKD
NVRLHALKLLYQFVLHAEAAMTAKFFEIYGDLAHACIDHVAEVNAEAAKV
ADLMGRLLSYDAWIDHGFDGLERNARESYMRCFYHMFTASLGGTYEQLMR
LAKLLRCTDYSHTLKPGFQHYILKLLNTIVDKTLKINAGQNELEDLYESV
YVCAIKVMALSSSLENVGDEDVNFGQTLIEKMVKLLNTSVPKIHERWFHL
ALQDVINLDAALEDNAEPVMLLNGLINMCHIRATYVHDLIEKVKIVFQHC
CDSAQVKIFSSLSLATLFWSKTMNVERESSTQMLSEFVSQIVEPYLTWKA
GSNAEAMRSLAMATLCALAQGAESESVEVLPSLAKYMPSLLEDRNVTTRH
YAIKAVVYFREMSVEDLKPLAYATMQRMDDPSAGIRILAALAMGKLKPKF
AETDTEENYEKEVWDAIVKRAMDLLLLYHESPEKDMRAAVAVTLKVLAKS
HPEAWEERYQRALPMAQKKDLLTELYDKLTINEDSHTEVTSASQD*

GM01253.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17486-PA 850 GF17486-PA 1..846 1..845 3412 75.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21346-PA 845 GG21346-PA 1..845 1..845 4024 88 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13696-PA 836 GH13696-PA 1..836 1..834 2949 66.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
HEATR2-PA 845 CG31320-PA 1..845 1..845 4319 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24809-PA 843 GI24809-PA 1..835 1..833 3097 69 Plus
Dmoj\GI11254-PA 300 GI11254-PA 1..292 544..833 1043 65.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24019-PA 845 GL24019-PA 12..842 6..833 3006 66.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16178-PA 855 GA16178-PA 12..842 6..833 3006 67 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:44:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25857-PA 753 GM25857-PA 41..753 131..845 3639 94.5 Plus
Dsec\GM25857-PA 753 GM25857-PA 1..171 1..178 207 36.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20426-PA 652 GD20426-PA 1..652 192..845 3360 95.6 Plus
Dsim\GD20425-PA 169 GD20425-PA 1..151 1..161 679 84 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24454-PA 842 GJ24454-PA 1..841 1..839 3110 68.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12152-PA 857 GK12152-PA 7..838 5..834 2925 65.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:44:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26455-PA 845 GE26455-PA 1..845 1..845 4039 89 Plus

GM01253.hyp Sequence

Translation from 602 to 3139

> GM01253.hyp
MGFDIDSQKICSDLESSDRRLKTTVLDELLDKCKEATNSESADKIADVFD
KLYLHLLKCYEDRFESVRSKAIQVVSAFLSSLPPTDFHLMNVVSTLAERM
GKAETVEPSEEIRLLYIAQLNLMICLYEKMENVGVFRECYPLVVKILIKS
IKDDYPVVQREGCSAVVTLSRLADTQEFRPFTESILLPLYTMLNHKHAQA
RISAIQAIARLSLHMDASGDAMRRLFNEVSPLLMDTMPLVRREVGQMGIL
MLMELLDRYSFFERILPLVLCCLKDESPEVLNHIYPQWLKCGIQYFNENE
AELSQQEISDLPVENYPKDVKRPTIGCRGLVQRSLRLLQLITRETSDWKD
NVRLHALKLLYQFVLHAEAAMTAKFFEIYGDLAHACIDHVAEVNAEAAKV
ADLMGRLLSYDAWIDHGFDGLERNARESYMRCFYHMFTASLGGTYEQLMR
LAKLLRCTDYSHTLKPGFQHYILKLLNTIVDKTLKINAGQNELEDLYESV
YVCAIKVMALSSSLENVGDEDVNFGQTLIEKMVKLLNTSVPKIHERWFHL
ALQDVINLDAALEDNAEPVMLLNGLINMCHIRATYVHDLIEKVKIVFQHC
CDSAQVKIFSSLSLATLFWSKTMNVERESSTQMLSEFVSQIVEPYLTWKA
GSNAEAMRSLAMATLCALAQGAESESVEVLPSLAKYMPSLLEDRNVTTRH
YAIKAVVYFREMSVEDLKPLAYATMQRMDDPSAGIRILAALAMGKLKPKF
AETDTEENYEKEVWDAIVKRAMDLLLLYHESPEKDMRAAVAVTLKVLAKS
HPEAWEERYQRALPMAQKKDLLTELYDKLTINEDSHTEVTSASQD*

GM01253.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31320-PA 845 CG31320-PA 1..845 1..845 4319 100 Plus