Clone GM01339 Report

Search the DGRC for GM01339

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:13
Well:39
Vector:pBS SK-
Associated Gene/TranscriptCG4045-RA
Protein status:GM01339.pep: gold
Preliminary Size:1085
Sequenced Size:906

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4045 2002-03-19 Blastp of sequenced clone
CG4045 2003-01-01 Sim4 clustering to Release 3
CG4045 2008-04-29 Release 5.5 accounting
CG4045 2008-08-15 Release 5.9 accounting
CG4045 2008-12-18 5.12 accounting

Clone Sequence Records

GM01339.complete Sequence

906 bp (906 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094742

> GM01339.complete
CCTCGTCGGTGCCTGATATCACTCGCTTCTGCTAATTTCTAGTAATGGTG
GCCACCGGTGGACAGGCTCAGGATCAGGGCCAGAACCAGGAGCCGGATGT
GCTAAACCCCACGTCGGCGGTGACGGGGTTGCCACAAAAGCGCTACTACC
GCCAGCGTGCGCACTCGAATCCCATTGCGGACCACAGCTTCGACTATCCT
GCTCGCCCGGAAGATGTGGACTGGCGCTCCATGTACCCAGGCATTCAGCA
GGGCCAGCAGGTAAGTTTTGCGGACATAGGCTGCGGCTATGGCGGCTTTC
TCGTCACCCTGGGGGAGATGTTCCCCGAGAAGCTGTCCATCGGCATGGAA
ATCCGCGTCAAGGTGTCGGACTACGTGGTGGACCGGATTGCGGCACTGCG
TCGACGATGCGCGGATACGGGTGCATACCAGAACATTGCCTGCTTACGCA
CCAACGCCATGAAGTATCTGCCCAACTACTTCGTAAAGGGCCAGCTGGAG
AAGATGTTCTTCCTCTACCCGGACCCACATTTCAAGCGCGCCAAGCACAA
GTGGCGTATTATCAACCAGGCTCTACTCTCCGAATATGCCTATATCCTCA
GGAAGGGGGGTCTGTTGTACACCATGACGGACGTTGAGGACTTGCACAAG
TGGATAGTGACACATATGGAGGAGCATCCGCTGTACGAGCGTCTTACCGA
AGAGGAGGCCAATGCTGATCCCATCACCCCGAAGCTGTACCAAAGCAGCG
AGGAGGGCGCTAAGGTGGTTCGAAACAAGGGCGATCATTTTCTGGCCATT
TTCCGGCGCCTTTAGGACACGTATATTCTCTATATATGTAGACATTAATT
TAAGGTTTCCTTAGAGTAAAGAGATCTATCGATTGTTAAAAAAAAAAAAA
AAAAAA

GM01339.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4045-RA 1025 CG4045-RA 116..1005 1..890 4450 100 Plus
CG4045.a 1378 CG4045.a 469..1358 1..890 4450 100 Plus
CG4061.a 1830 CG4061.a 1728..1830 890..788 515 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1969120..1969532 609..197 2065 100 Minus
chrX 22417052 chrX 1969583..1969778 196..1 980 100 Minus
chrX 22417052 chrX 1968709..1968885 887..711 885 100 Minus
chrX 22417052 chrX 1968952..1969054 710..608 485 98.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:13:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2075206..2075618 609..197 2065 100 Minus
X 23542271 X 2075669..2075864 196..1 980 100 Minus
X 23542271 X 2074792..2074971 890..711 900 100 Minus
X 23542271 X 2075038..2075140 710..608 515 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2083304..2083716 609..197 2065 100 Minus
X 23527363 X 2083767..2083962 196..1 980 100 Minus
X 23527363 X 2082890..2083069 890..711 900 100 Minus
X 23527363 X 2083136..2083238 710..608 515 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:29:24 has no hits.

GM01339.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:30:32 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1968709..1968885 711..887 100 <- Minus
chrX 1968952..1969053 609..710 98 <- Minus
chrX 1969121..1969532 197..608 100 <- Minus
chrX 1969583..1969778 1..196 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:58 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 1..771 45..815 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:30:08 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 1..771 45..815 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:29:55 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 1..771 45..815 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:03:52 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 1..771 45..815 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:07:40 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 1..771 45..815 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:56:21 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 37..923 1..887 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:30:08 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 37..923 1..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:29:55 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 37..923 1..887 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:03:52 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 1..884 1..884 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:07:40 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 37..923 1..887 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:32 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
X 2074795..2074971 711..887 100 <- Minus
X 2075038..2075139 609..710 100 <- Minus
X 2075207..2075618 197..608 100 <- Minus
X 2075669..2075864 1..196 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:32 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
X 2074795..2074971 711..887 100 <- Minus
X 2075038..2075139 609..710 100 <- Minus
X 2075207..2075618 197..608 100 <- Minus
X 2075669..2075864 1..196 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:30:32 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
X 2074795..2074971 711..887 100 <- Minus
X 2075038..2075139 609..710 100 <- Minus
X 2075207..2075618 197..608 100 <- Minus
X 2075669..2075864 1..196 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:29:55 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1969240..1969651 197..608 100 <- Minus
arm_X 1968828..1969004 711..887 100 <- Minus
arm_X 1969071..1969172 609..710 100 <- Minus
arm_X 1969702..1969897 1..196 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:37:31 Download gff for GM01339.complete
Subject Subject Range Query Range Percent Splice Strand
X 2083305..2083716 197..608 100 <- Minus
X 2083767..2083962 1..196 100   Minus
X 2082893..2083069 711..887 100 <- Minus
X 2083136..2083237 609..710 100 <- Minus

GM01339.hyp Sequence

Translation from 44 to 814

> GM01339.hyp
MVATGGQAQDQGQNQEPDVLNPTSAVTGLPQKRYYRQRAHSNPIADHSFD
YPARPEDVDWRSMYPGIQQGQQVSFADIGCGYGGFLVTLGEMFPEKLSIG
MEIRVKVSDYVVDRIAALRRRCADTGAYQNIACLRTNAMKYLPNYFVKGQ
LEKMFFLYPDPHFKRAKHKWRIINQALLSEYAYILRKGGLLYTMTDVEDL
HKWIVTHMEEHPLYERLTEEEANADPITPKLYQSSEEGAKVVRNKGDHFL
AIFRRL*

GM01339.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG4045-PA 256 CG4045-PA 1..256 1..256 1365 100 Plus

GM01339.pep Sequence

Translation from 44 to 814

> GM01339.pep
MVATGGQAQDQGQNQEPDVLNPTSAVTGLPQKRYYRQRAHSNPIADHSFD
YPARPEDVDWRSMYPGIQQGQQVSFADIGCGYGGFLVTLGEMFPEKLSIG
MEIRVKVSDYVVDRIAALRRRCADTGAYQNIACLRTNAMKYLPNYFVKGQ
LEKMFFLYPDPHFKRAKHKWRIINQALLSEYAYILRKGGLLYTMTDVEDL
HKWIVTHMEEHPLYERLTEEEANADPITPKLYQSSEEGAKVVRNKGDHFL
AIFRRL*

GM01339.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21935-PA 257 GF21935-PA 8..257 7..256 1161 83.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12652-PA 256 GG12652-PA 1..256 1..256 1352 95.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24451-PA 247 GH24451-PA 6..247 15..256 1151 85.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4045-PA 256 CG4045-PA 1..256 1..256 1365 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21651-PA 248 GI21651-PA 3..248 12..256 1130 82.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18335-PA 247 GL18335-PA 7..247 16..256 1181 88.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17913-PA 247 GA17913-PA 7..247 16..256 1183 88.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18921-PA 256 GM18921-PA 1..256 1..256 1369 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16394-PA 256 GD16394-PA 1..256 1..256 1362 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16889-PA 247 GJ16889-PA 4..247 13..256 1168 86.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16167-PA 251 GK16167-PA 1..251 1..256 1121 80.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16980-PA 256 GE16980-PA 1..256 1..256 1328 94.9 Plus