Clone GM01350 Report

Search the DGRC for GM01350

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:13
Well:50
Vector:pBS SK-
Associated Gene/TranscriptCG5214-RA
Protein status:GM01350.pep: gold
Preliminary Size:1991
Sequenced Size:1862

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5214 2001-01-01 Release 2 assignment
CG5214 2001-10-10 Blastp of sequenced clone
CG5214 2003-01-01 Sim4 clustering to Release 3
CG5214 2008-04-29 Release 5.5 accounting
CG5214 2008-08-15 Release 5.9 accounting
CG5214 2008-12-18 5.12 accounting

Clone Sequence Records

GM01350.complete Sequence

1862 bp (1862 high quality bases) assembled on 2001-10-10

GenBank Submission: AY089515

> GM01350.complete
AAATTGGTATTTTTTTTAAGGGAAAGGGGCGGACTGCAGAAATCGACGTT
GCTTTGCCTTGGCCGCTAACTCTGTTTTAAATTCGAGTGCTTTGACATAA
ATTGAAAGTAGAACAACCGTCGAACAGAATTTCGCGGACCAGAGTCGCAG
CAATGACGGGAATAATTTCGATCGTAACGAGACGGCTGCCCCAAACTTTG
GGAATGCGAGCCCTGCGGAGTAATGAGGTAAAGCGCTGCATCCGCCAATA
TTCTCGGTTAGTTGCCTGCGCCGCCCAGCAGCAGCAACTGCTTCGCCAGG
ATGGCTCGAATCGCTGCCAGGAGGCCACCAGGCTTCTCACCTGGCAGGGA
ATCCACACCACGTCGAGCTTGTGGTCGGAGCAGACCGTCAATGTGCCACC
CTTTGCGGACTCCATTGCCGAGGGTGACATCAAGTTTACTTGCAAGGTGG
GTGACTCATTCGCCGCTGACGAGGCTGTCATGGAAATCGAGACCGACAAG
ACGACGGTGGCTGTGCCAGCTCCCTTCTCCGGAACTCTGACCGACATTCT
GGTGAAGGATGGCGACACCGTCAAGCCCGGCCAGGCTCTGTTCAAGATTA
AGCCCGGTGCAGCGCCCGCCAAGGCAGCTGCTCCAGCGGCTGCTCCTGCG
CCTGCTGCCCCAAAAGCAGCACCAGCTCCAGCTGCTGCACCCAAGCCGGC
ACCTCCACCACCTGCGGCCGGCGCACCAAAGCCACCACCACCGCCACCAC
CAAAGGCAGCCCCTCGACCACCGCCACCTGCTCCAGTGGCTGCACTCAAA
CCGGCCGTCGCCCAGGTGAAGGTGCCACCAGCGGACGGATCGCGGCAGAT
CCTAGGCACTAGGTCCGAGCAGCGTGTCAAGATGAACCGCATGCGTCTAA
AGATTGCCGCCCGCTTGAAGGATGCCCAGAACACATGTGCCATGCTCACC
ACTTTCAACGAGGTTGATATGAGCTATGCCATGGACTTCCGAAAGCAGAA
TCTGGATGCGTTCACTAAGAAGTATGGTATTAAGTTTGGATTCATGTCGA
TCTTCGCCAAGGCTAGTGCCTATGCGCTGCAGGATCAGCCCGTAGTGAAC
GCCGTCATCGATGGCACGGACATCGTGTATCGCGACTACGTTGACATCTC
TGTGGCCGTGGCTACGCCCCGTGGATTGGTGGTACCCGTCATCCGCAACG
TGGAGGGCATGAACTATGCGGACATCGAGATCGCACTGGCCGGTCTGGCC
GATAAGGCCAGGCGGGATGCCATCACCGTGGAAGACATGGACGGTGGCAC
CTTCACCATCAGCAATGGCGGAGTGTTCGGATCCCTGATGGGCACGCCCA
TCATCAATCCGCCACAGAGTGCCATTCTCGGCATGCACGGCATCTTTGAG
CGGCCAATTGCTGTCAAGGGAGAGGTCAAGATACGTCCTATGATGTACAT
CGCCCTGACCTACGATCACCGAATCATTGATGGACGTGAGGCGGTCCTGT
TCCTGCGAAAAATAAAGGCTGCCGTTGAGAACCCAGCAATAATTGTTGCC
GGATTGTAATGTGAATTGTCTTAACACACGTCCACGGCCTTAATTTGATA
TTAGCCTTCTTAATTTGAAACTGTCTTTGGTTATTTATTATTTCATTTTG
CGAGCGTCACAAAAATTAGAAAATCAACCGAATTCGAACTACTCTTAGCA
ACGGATGTAGTATAATAAATCAAACGTGGATCTTTTCTTAAACATAACCT
TTGCACTGAATGTTATTGTTAACCTAAGACGCTGCGATGGAATGTCGTAA
TAAATCGATGATGAATATTGACCACCCTCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

GM01350.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-RA 2254 CG5214-RA 275..2105 1..1831 9020 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7070694..7071233 434..973 2700 100 Plus
chr3R 27901430 chr3R 7072029..7072435 1423..1829 2020 99.8 Plus
chr3R 27901430 chr3R 7071660..7071968 1118..1426 1530 99.7 Plus
chr3R 27901430 chr3R 7069873..7070094 11..232 1110 100 Plus
chr3R 27901430 chr3R 7071310..7071457 972..1119 740 100 Plus
chr3R 27901430 chr3R 7070358..7070464 226..332 535 100 Plus
chr3R 27901430 chr3R 7070516..7070621 330..435 530 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:13:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11245121..11245660 434..973 2670 99.6 Plus
3R 32079331 3R 11246456..11246864 1423..1831 1985 99 Plus
3R 32079331 3R 11246087..11246395 1118..1426 1515 99.4 Plus
3R 32079331 3R 11244290..11244521 1..232 1145 99.6 Plus
3R 32079331 3R 11245737..11245884 972..1119 740 100 Plus
3R 32079331 3R 11244785..11244891 226..332 535 100 Plus
3R 32079331 3R 11244943..11245048 330..435 530 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10985952..10986491 434..973 2670 99.6 Plus
3R 31820162 3R 10987287..10987695 1423..1831 1985 99 Plus
3R 31820162 3R 10986918..10987226 1118..1426 1515 99.3 Plus
3R 31820162 3R 10985121..10985352 1..232 1145 99.5 Plus
3R 31820162 3R 10986568..10986715 972..1119 740 100 Plus
3R 31820162 3R 10985616..10985722 226..332 535 100 Plus
3R 31820162 3R 10985774..10985879 330..435 530 100 Plus
Blast to na_te.dros performed on 2019-03-15 21:49:21 has no hits.

GM01350.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:50:21 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7071312..7071456 974..1118 100 -> Plus
chr3R 7069864..7070089 1..227 99 -> Plus
chr3R 7070360..7070463 228..331 100 -> Plus
chr3R 7070518..7070619 332..433 100 -> Plus
chr3R 7070694..7070983 434..723 100 == Plus
chr3R 7071039..7071233 779..973 100 -> Plus
chr3R 7071661..7071966 1119..1424 99 -> Plus
chr3R 7072031..7072435 1425..1829 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:01:00 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 1..1407 153..1559 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:46 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 1..1407 153..1559 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:59:26 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 1..1407 153..1559 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:39 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 1..1407 153..1559 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:50 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 1..1407 153..1559 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:23:50 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 7..1835 1..1829 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:46 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 7..1835 1..1829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:59:26 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 1..1817 14..1829 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:39 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 7..1835 1..1829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:50 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
CG5214-RA 1..1817 14..1829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:21 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11244787..11244890 228..331 100 -> Plus
3R 11244945..11245046 332..433 100 -> Plus
3R 11244290..11244516 1..227 99 -> Plus
3R 11245121..11245660 434..973 99 -> Plus
3R 11245739..11245883 974..1118 100 -> Plus
3R 11246088..11246393 1119..1424 99 -> Plus
3R 11246458..11246862 1425..1829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:21 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11244787..11244890 228..331 100 -> Plus
3R 11244945..11245046 332..433 100 -> Plus
3R 11244290..11244516 1..227 99 -> Plus
3R 11245121..11245660 434..973 99 -> Plus
3R 11245739..11245883 974..1118 100 -> Plus
3R 11246088..11246393 1119..1424 99 -> Plus
3R 11246458..11246862 1425..1829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:50:21 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11244787..11244890 228..331 100 -> Plus
3R 11244945..11245046 332..433 100 -> Plus
3R 11244290..11244516 1..227 99 -> Plus
3R 11245121..11245660 434..973 99 -> Plus
3R 11245739..11245883 974..1118 100 -> Plus
3R 11246088..11246393 1119..1424 99 -> Plus
3R 11246458..11246862 1425..1829 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:59:26 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7071461..7071605 974..1118 100 -> Plus
arm_3R 7070012..7070238 1..227 99 -> Plus
arm_3R 7070509..7070612 228..331 100 -> Plus
arm_3R 7070667..7070768 332..433 100 -> Plus
arm_3R 7070843..7071382 434..973 99 -> Plus
arm_3R 7071810..7072115 1119..1424 99 -> Plus
arm_3R 7072180..7072584 1425..1829 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:54 Download gff for GM01350.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10985121..10985347 1..227 99 -> Plus
3R 10985618..10985721 228..331 100 -> Plus
3R 10985776..10985877 332..433 100 -> Plus
3R 10985952..10986491 434..973 99 -> Plus
3R 10986570..10986714 974..1118 100 -> Plus
3R 10986919..10987224 1119..1424 99 -> Plus
3R 10987289..10987693 1425..1829 99   Plus

GM01350.pep Sequence

Translation from 152 to 1558

> GM01350.pep
MTGIISIVTRRLPQTLGMRALRSNEVKRCIRQYSRLVACAAQQQQLLRQD
GSNRCQEATRLLTWQGIHTTSSLWSEQTVNVPPFADSIAEGDIKFTCKVG
DSFAADEAVMEIETDKTTVAVPAPFSGTLTDILVKDGDTVKPGQALFKIK
PGAAPAKAAAPAAAPAPAAPKAAPAPAAAPKPAPPPPAAGAPKPPPPPPP
KAAPRPPPPAPVAALKPAVAQVKVPPADGSRQILGTRSEQRVKMNRMRLK
IAARLKDAQNTCAMLTTFNEVDMSYAMDFRKQNLDAFTKKYGIKFGFMSI
FAKASAYALQDQPVVNAVIDGTDIVYRDYVDISVAVATPRGLVVPVIRNV
EGMNYADIEIALAGLADKARRDAITVEDMDGGTFTISNGGVFGSLMGTPI
INPPQSAILGMHGIFERPIAVKGEVKIRPMMYIALTYDHRIIDGREAVLF
LRKIKAAVENPAIIVAGL*

GM01350.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:43:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16855-PA 469 GF16855-PA 1..469 1..468 1852 84 Plus
Dana\GF21220-PA 464 GF21220-PA 263..462 269..465 263 35.1 Plus
Dana\GF15860-PA 513 GF15860-PA 285..512 240..465 263 30.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18067-PA 469 GG18067-PA 1..469 1..468 2380 97.2 Plus
Dere\GG17863-PA 461 GG17863-PA 16..459 36..465 322 27.7 Plus
Dere\GG10480-PA 494 GG10480-PA 273..493 247..465 239 30 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:43:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18803-PA 481 GH18803-PA 232..481 219..468 1245 93.2 Plus
Dgri\GH18804-PA 400 GH18804-PA 161..400 223..468 1036 77.2 Plus
Dgri\GH24642-PA 460 GH24642-PA 259..458 269..465 265 34.8 Plus
Dgri\GH13735-PA 504 GH13735-PA 280..503 244..465 237 28.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-PA 468 CG5214-PA 1..468 1..468 2389 100 Plus
muc-PC 473 CG5261-PC 83..472 79..465 450 33.8 Plus
muc-PD 489 CG5261-PD 83..488 79..465 434 32.5 Plus
muc-PE 496 CG5261-PE 83..495 79..465 432 32.2 Plus
muc-PF 512 CG5261-PF 83..511 79..465 416 31.1 Plus
muc-PB 512 CG5261-PB 83..511 79..465 416 31.1 Plus
muc-PA 421 CG5261-PA 12..420 98..465 411 31.6 Plus
CG5599-PA 462 CG5599-PA 29..460 67..465 301 27.2 Plus
Argk-PA 562 CG32031-PA 26..112 141..226 168 48.3 Plus
RpL22-PA 299 CG7434-PA 114..261 153..291 158 34.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22693-PA 482 GI22693-PA 235..482 221..468 1272 95.2 Plus
Dmoj\GI22695-PA 370 GI22695-PA 135..370 233..468 1048 82.2 Plus
Dmoj\GI21689-PA 460 GI21689-PA 208..458 206..465 278 33.2 Plus
Dmoj\GI23773-PA 514 GI23773-PA 281..513 238..465 247 30.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11994-PA 145 GL11994-PA 1..145 324..468 731 95.9 Plus
Dper\GL25816-PA 493 GL25816-PA 290..492 247..465 186 27.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26154-PA 479 GA26154-PA 230..479 219..468 1255 93.6 Plus
Dpse\GA18998-PA 462 GA18998-PA 29..460 67..465 303 28.1 Plus
Dpse\GA18768-PA 515 GA18768-PA 294..514 247..465 230 29.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23935-PA 451 GM23935-PA 1..451 18..468 2336 98.9 Plus
Dsec\GM12058-PA 440 GM12058-PA 239..438 269..465 279 36.1 Plus
Dsec\GM16455-PA 494 GM16455-PA 262..493 235..465 246 30.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18745-PA 468 GD18745-PA 1..468 1..468 2429 99.4 Plus
Dsim\GD17193-PA 460 GD17193-PA 29..458 67..465 311 27.6 Plus
Dsim\GD23472-PA 496 GD23472-PA 264..495 235..465 246 30.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:43:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23421-PA 481 GJ23421-PA 232..481 219..468 1280 96 Plus
Dvir\GJ23422-PA 474 GJ23422-PA 239..474 233..468 1059 81.4 Plus
Dvir\GJ15870-PA 466 GJ15870-PA 265..464 269..465 267 35.6 Plus
Dvir\GJ20958-PA 513 GJ20958-PA 289..512 244..465 241 29.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:43:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11289-PA 475 GK11289-PA 1..475 1..468 1793 81.3 Plus
Dwil\GK16188-PA 463 GK16188-PA 205..461 200..465 288 32.8 Plus
Dwil\GK24306-PA 507 GK24306-PA 283..506 244..465 251 30.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:43:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26088-PA 469 GE26088-PA 1..469 1..468 2382 97.2 Plus
Dyak\GE17165-PA 461 GE17165-PA 29..459 67..465 310 27.1 Plus
Dyak\GE14551-PA 510 GE14551-PA 278..509 235..465 236 29.4 Plus

GM01350.hyp Sequence

Translation from 152 to 1558

> GM01350.hyp
MTGIISIVTRRLPQTLGMRALRSNEVKRCIRQYSRLVACAAQQQQLLRQD
GSNRCQEATRLLTWQGIHTTSSLWSEQTVNVPPFADSIAEGDIKFTCKVG
DSFAADEAVMEIETDKTTVAVPAPFSGTLTDILVKDGDTVKPGQALFKIK
PGAAPAKAAAPAAAPAPAAPKAAPAPAAAPKPAPPPPAAGAPKPPPPPPP
KAAPRPPPPAPVAALKPAVAQVKVPPADGSRQILGTRSEQRVKMNRMRLK
IAARLKDAQNTCAMLTTFNEVDMSYAMDFRKQNLDAFTKKYGIKFGFMSI
FAKASAYALQDQPVVNAVIDGTDIVYRDYVDISVAVATPRGLVVPVIRNV
EGMNYADIEIALAGLADKARRDAITVEDMDGGTFTISNGGVFGSLMGTPI
INPPQSAILGMHGIFERPIAVKGEVKIRPMMYIALTYDHRIIDGREAVLF
LRKIKAAVENPAIIVAGL*

GM01350.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5214-PA 468 CG5214-PA 1..468 1..468 2389 100 Plus
CG5261-PC 473 CG5261-PC 83..472 79..465 450 33.8 Plus
CG5261-PD 489 CG5261-PD 83..488 79..465 434 32.5 Plus
CG5261-PE 496 CG5261-PE 83..495 79..465 432 32.2 Plus
CG5261-PF 512 CG5261-PF 83..511 79..465 416 31.1 Plus