Clone GM01519 Report

Search the DGRC for GM01519

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:15
Well:19
Vector:pBS SK-
Associated Gene/TranscriptCG9248-RA
Protein status:GM01519.pep: gold
Preliminary Size:1906
Sequenced Size:1811

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9248 2001-01-01 Release 2 assignment
CG9248 2001-11-09 Blastp of sequenced clone
CG9248 2003-01-01 Sim4 clustering to Release 3
CG9248 2008-04-29 Release 5.5 accounting
CG9248 2008-08-15 Release 5.9 accounting
CG9248 2008-12-18 5.12 accounting

Clone Sequence Records

GM01519.complete Sequence

1811 bp (1811 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069240

> GM01519.complete
TTCTAGCGCCTATCAAACAGAGAGCCGCGAGCACTATCAATCACCTCCCG
TATCGATAAGGATAATCAATTTCTTCTTGCTATTTTTAGACATGCCGGAA
TACAAGAAGCTAGAGGACCAGGAGTCAGATGTGGAGAACGCAAATAGAAC
CACCGTCCAGAACACTGCTACCGTTCAGGACGCCGGGGAGGGACAGAGGC
AGGCGGCTGGCCAGCAGGCGGGACAAATGGTGACGGTGTCCTTGTTCATG
CTTCTTTTCCTCGGCAGCTCCTACTTCCAACCGCGACCACGACTGCATCA
GTACAAGGGGGGCAGGGGCCATGGACTGCTGGAGAAGTTCGACTGCAACA
TACAACTGGTGGAATCCATACCCATTGGCCTAACATATCCTGACGGCAGT
CCACGATTCCTAAGCACTTACGAAGCTTGGCTGGAGTTATTGGAGAGCGC
CACGACCTCACTAGACATAGCATCCTTCTATTGGACTCTGAAGGCCGAGG
ATACGCCCGGGGTGTCGGACAACAGCACTCGGCCGGGCGAGGACGTCTTC
GCAAGACTCTTAGCCAACGGAAACGGCGGTAGCAGGTCGCCCAGGATCAA
AATTCGCATTGCCCAGAGCGAACCCTCTAGTGGCACACCCAATTTAAACA
CAAAGTTGTTAGCTAGCGCTGGCGCTGCCGAAGTTGTTAGCATCTCGTTT
CCCAAGTACTTTGGCAGCGGAGTGCTCCACACCAAGCTGTGGGTGGTGGA
CAACAAGCACTTTTATCTGGGCAGCGCCAATATGGACTGGCGGGCACTGA
CCCAAGTCAAGGAGATGGGCGTGCTAGTCCAGAACTGTCCAGAACTGACC
CATGATGTGGCCAAGATCTTTGGAGAGTACTGGTACCTAGGCAACAGTGA
AAGTTCTCGCATTCCCGACTGGGACTGGCGTTACGCGACCAGCTACAACT
TGAAACATCCCATGCAGCTGAGTGTAAACAAAAATACTAGCATAGAGGGC
TTCCTATCTAGCTCACCGCCTCCCCTTTCACCCTCCGGCCGAACAGACGA
CCTGAACGCCATCCTCAACACTATTAACACGGCCATAACTTACGTAAATA
TTGCGGTTATGGACTATTATCCGCTGATCATATACGAGAAGAACCACCAC
TATTGGCCGTTTATCGACGACGCTCTGCGAAAGGCGGCTGTAGAACGGGG
CGTGGCTGTGAAGCTCCTTATTTCGTGGTGGAAGCACTCGAATCCCAGTG
AGGACCGGTATCTCAGGTCACTGCAGGACTTGGCATCCAAAGAAGACAAA
ATTGATATACAAATTCGTCGATTCATAGTGCCGACTGATTCGAGCCAGGA
GAAGATTCCCTTTGGCCGTGTCAACCACAACAAGTACATGGTTACAGATC
GAGTGGCTTACATCGGAACTTCTAACTGGAGTGGAGACTACTTCACGGAC
ACCGCTGGCATTGGACTGGTGCTAAGCGAAACCTTCGAGACCGAGACCAC
TAATACCTTAAGAAGCGATCTGCGGAATGTTTTCGAGCGGGACTGGAATA
GCAAGTACGCCACACCGCTGGTATAATCGCACAACGTTGTAATGTGATTA
TTCCGATGCCAATGTTATTTTAACTATTTTAGCTCCCGACAATTGTTCAA
TCCTATTCATTGCTTTTATTCAGTTTTGATCATGCGTGAATTCAAATAAT
ACGCGAATTTACGAATTGGAATAATGCAAGTATTTAAAGTATGGAGATAC
AGTGAGCTTGAAATCATAACGTAATAAAATTCATTCTTTCATAAAAAAAA
AAAAAAAAAAA

GM01519.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-RA 1922 CG9248-RA 44..1836 1..1793 8965 100 Plus
CG9248.a 1801 CG9248.a 63..1801 54..1792 8680 99.9 Plus
CG9248-RB 1920 CG9248-RB 129..1834 88..1793 8530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:12:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 21157777..21159288 281..1792 7560 100 Plus
chr2L 23010047 chr2L 21157423..21157702 1..280 1400 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:13:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:12:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21159272..21160784 281..1793 7565 100 Plus
2L 23513712 2L 21158918..21159197 1..280 1400 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21159272..21160784 281..1793 7565 100 Plus
2L 23513712 2L 21158918..21159197 1..280 1400 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:12:08 has no hits.

GM01519.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:13:12 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 21157423..21157702 1..280 100 -> Plus
chr2L 21157777..21159288 281..1792 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:01:08 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 1..1485 92..1576 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:31:10 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 1..1485 92..1576 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:58 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RB 1..1485 92..1576 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:52 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 1..1485 92..1576 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:13:46 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RB 1..1485 92..1576 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:29 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 22..1813 1..1792 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:31:10 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 22..1813 1..1792 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:58 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 15..1806 1..1792 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:52 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 22..1813 1..1792 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:13:46 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
CG9248-RA 15..1806 1..1792 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:12 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21158918..21159197 1..280 100 -> Plus
2L 21159272..21160783 281..1792 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:12 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21158918..21159197 1..280 100 -> Plus
2L 21159272..21160783 281..1792 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:13:12 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21158918..21159197 1..280 100 -> Plus
2L 21159272..21160783 281..1792 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:58 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21158918..21159197 1..280 100 -> Plus
arm_2L 21159272..21160783 281..1792 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:15 Download gff for GM01519.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21158918..21159197 1..280 100 -> Plus
2L 21159272..21160783 281..1792 100   Plus

GM01519.hyp Sequence

Translation from 0 to 1575

> GM01519.hyp
SSAYQTESREHYQSPPVSIRIINFFLLFLDMPEYKKLEDQESDVENANRT
TVQNTATVQDAGEGQRQAAGQQAGQMVTVSLFMLLFLGSSYFQPRPRLHQ
YKGGRGHGLLEKFDCNIQLVESIPIGLTYPDGSPRFLSTYEAWLELLESA
TTSLDIASFYWTLKAEDTPGVSDNSTRPGEDVFARLLANGNGGSRSPRIK
IRIAQSEPSSGTPNLNTKLLASAGAAEVVSISFPKYFGSGVLHTKLWVVD
NKHFYLGSANMDWRALTQVKEMGVLVQNCPELTHDVAKIFGEYWYLGNSE
SSRIPDWDWRYATSYNLKHPMQLSVNKNTSIEGFLSSSPPPLSPSGRTDD
LNAILNTINTAITYVNIAVMDYYPLIIYEKNHHYWPFIDDALRKAAVERG
VAVKLLISWWKHSNPSEDRYLRSLQDLASKEDKIDIQIRRFIVPTDSSQE
KIPFGRVNHNKYMVTDRVAYIGTSNWSGDYFTDTAGIGLVLSETFETETT
NTLRSDLRNVFERDWNSKYATPLV*

GM01519.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-PC 494 CG9248-PC 1..494 31..524 2602 100 Plus
CG9248-PA 494 CG9248-PA 1..494 31..524 2602 100 Plus
CG9248-PB 494 CG9248-PB 1..494 31..524 2602 100 Plus
CG43345-PC 493 CG43345-PC 42..487 63..523 1018 45.3 Plus
CG43345-PB 493 CG9243-PA 42..487 63..523 1018 45.3 Plus

GM01519.pep Sequence

Translation from 91 to 1575

> GM01519.pep
MPEYKKLEDQESDVENANRTTVQNTATVQDAGEGQRQAAGQQAGQMVTVS
LFMLLFLGSSYFQPRPRLHQYKGGRGHGLLEKFDCNIQLVESIPIGLTYP
DGSPRFLSTYEAWLELLESATTSLDIASFYWTLKAEDTPGVSDNSTRPGE
DVFARLLANGNGGSRSPRIKIRIAQSEPSSGTPNLNTKLLASAGAAEVVS
ISFPKYFGSGVLHTKLWVVDNKHFYLGSANMDWRALTQVKEMGVLVQNCP
ELTHDVAKIFGEYWYLGNSESSRIPDWDWRYATSYNLKHPMQLSVNKNTS
IEGFLSSSPPPLSPSGRTDDLNAILNTINTAITYVNIAVMDYYPLIIYEK
NHHYWPFIDDALRKAAVERGVAVKLLISWWKHSNPSEDRYLRSLQDLASK
EDKIDIQIRRFIVPTDSSQEKIPFGRVNHNKYMVTDRVAYIGTSNWSGDY
FTDTAGIGLVLSETFETETTNTLRSDLRNVFERDWNSKYATPLV*

GM01519.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14741-PA 493 GF14741-PA 1..492 1..493 2006 74.7 Plus
Dana\GF15153-PA 572 GF15153-PA 13..439 3..446 907 42.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21283-PA 493 GG21283-PA 1..492 1..493 2341 90.7 Plus
Dere\GG21517-PA 493 GG21517-PA 44..487 35..493 1023 45.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13672-PA 479 GH13672-PA 15..478 28..493 1467 60.6 Plus
Dgri\GH10479-PA 508 GH10479-PA 99..502 85..493 1313 59.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9248-PC 494 CG9248-PC 1..494 1..494 2602 100 Plus
CG9248-PA 494 CG9248-PA 1..494 1..494 2602 100 Plus
CG9248-PB 494 CG9248-PB 1..494 1..494 2602 100 Plus
CG43345-PC 493 CG43345-PC 42..487 33..493 1018 45.3 Plus
CG43345-PB 493 CG9243-PA 42..487 33..493 1018 45.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17100-PA 474 GI17100-PA 67..474 83..494 1416 63.5 Plus
Dmoj\GI17997-PA 421 GI17997-PA 13..415 85..493 1297 59.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:10:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25893-PA 491 GL25893-PA 1..490 1..493 1879 72 Plus
Dper\GL25859-PA 442 GL25859-PA 37..436 83..493 1073 51.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21643-PA 491 GA21643-PA 1..490 1..493 1868 71.8 Plus
Dpse\GA21638-PA 498 GA21638-PA 93..492 83..493 1070 51.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:10:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23395-PA 494 GM23395-PA 1..494 1..494 2386 94.9 Plus
Dsec\GM23269-PA 493 GM23269-PA 42..487 33..493 1024 44.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24305-PA 494 GD24305-PA 1..494 1..494 2401 95.3 Plus
Dsim\GD21647-PA 493 GD21647-PA 42..487 33..493 1031 45 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16138-PA 473 GJ16138-PA 15..469 30..490 1447 60.6 Plus
Dvir\GJ19603-PA 510 GJ19603-PA 101..504 85..493 1305 59.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21113-PA 477 GK21113-PA 7..473 22..490 1514 58.9 Plus
Dwil\GK21048-PA 472 GK21048-PA 72..460 64..466 1016 47.5 Plus
Dwil\GK15877-PA 200 GK15877-PA 1..199 1..213 471 47.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12900-PA 493 GE12900-PA 1..492 1..493 2424 91.7 Plus
Dyak\GE12996-PA 493 GE12996-PA 94..487 85..493 1049 50 Plus