BDGP Sequence Production Resources |
Search the DGRC for GM01838
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 18 |
Well: | 38 |
Vector: | pBS SK- |
Associated Gene/Transcript | OstStt3-RA |
Protein status: | GM01838.pep: gold |
Preliminary Size: | 2699 |
Sequenced Size: | 2417 |
Gene | Date | Evidence |
---|---|---|
CG7748 | 2001-01-01 | Release 2 assignment |
CG7748 | 2002-12-11 | Blastp of sequenced clone |
CG7748 | 2003-01-01 | Sim4 clustering to Release 3 |
OstStt3 | 2008-04-29 | Release 5.5 accounting |
OstStt3 | 2008-08-15 | Release 5.9 accounting |
OstStt3 | 2008-12-18 | 5.12 accounting |
2417 bp (2417 high quality bases) assembled on 2002-12-11
GenBank Submission: AF132552
> GM01838.complete TCTAAGCGAAGAATGTGTCGTTGCATTTCAGATCGGTTATAATTTTCGAG TTACTGGCTGGAATTGGGACATGAATCGGACGCCGAAGATGCTGAACAGC AAGGTGGCTGGCTACAGCAGCCTAATCACCTTCGCCATCCTGCTAATCGC CTGGCTGGCCGGATTTTCCTCTCGCCTCTTCGCCGTCATCCGTTTCGAGT CGATTATCCATGAGTTTGATCCGTGGTTCAACTACCGGGCCACCGCCTAC ATGGTGCAGAATGGTTGGTACAACTTCCTCAACTGGTTCGACGAGCGCGC ATGGTATCCGCTCGGCAGGATTGTGGGCGGTACCGTCTATCCCGGCCTGA TGATTACGTCCGGCGGAATCCATTGGCTGCTGCACGTACTCAACATACCG GTCCATATTCGTGACATCTGCGTGTTCCTGGCGCCGATCTTCAGTGGCCT GACCTCCATCTCCACCTACCTGCTGACCAAGGAGCTGTGGTCCGCGGGCG CCGGCCTCTTCGCCGCCAGCTTCATCGCCATCGTGCCTGGCTACATCAGT AGGTCGGTGGCTGGATCGTACGATAACGAGGGCATTGCCATATTCGCCCT GCAGTTCACCTACTTCCTGTGGGTGCGCTCAGTGAAGACTGGATCCGTGT TCTGGTCGGCCGCAGCCGCTTTGTCCTACTTCTACATGGTGTCCGCCTGG GGTGGCTACGTGTTCATCATCAACCTGATACCCCTGCACGTCTTCGTACT GCTCATTATGGGCAGGTACTCGCCGCGTCTGCTGACCAGCTACAGCACCT TCTACATCCTGGGACTGCTGTTCTCCATGCAGATCCCCTTCGTGGGATTC CAACCGATACGCACCAGTGAACACATGGCTGCGCTGGGAGTGTTTGTGCT CCTTATGGCCGTGGCCACCTTGCGCCATTTGCAGTCCGTGCTGTCGCGCA ACGAGTTCCGGAAGCTGTTCATCGTCGGCGGATTGCTGGTGGGCGTTGGC GTCTTTGTGGCCGTCGTGGTGCTCACCATGCTGGGCGTTGTGGCCCCGTG GAGTGGACGCTTCTACTCGCTGTGGGATACTGGCTACGCCAAGATCCACA TTCCCATCATTGCATCCGTGTCGGAGCATCAGCCCACCACTTGGTTCTCG TTCTTCTTTGATCTGCACATCCTGGTGTGCGCCTTCCCAGTGGGAGTGTG GTACTGCATCAAGCAGATCAACGACGAGCGCGTTTTCGTGGTGCTGTACG CCATCAGTGCGGTTTACTTCGCTGGTGTGATGGTGCGTTTGATGTTGACC CTCACGCCGGTGGTGTGCATGCTGGCCGGAGTGGCCTTTTCGGGACTGTT GGATGTGTTCCTGCAAGAGGATTCGTCTAAGCGAATGGGCACAGCCATAA GCGCAGCCACCGAAGTGGATGAAGCTGAGGATTCCATTGAGAAGAAGACG CTGTACGACAAGGCTGGCAAGCTGAAGCATCGTACTAAGCATGATGCCCA GCAGGATACTGGCGTCAGCTCCAACCTGAAGAGTATTGTTATTTTGGCCG TTCTAATGCTGTTGATGATGTTCGCTGTCCACTGCACGTGGGTGACCAGC AATGCCTACTCCAGTCCCTCCATTGTCTTGGCTTTCCACAACAGTCAAGA TGGATCCCGCAACATTTTAGACGATTTCAGAGAGGCTTACTACTGGCTTT CGCAGAACACTGCCGATGATGCTCGCGTTATGTCTTGGTGGGATTACGGA TACCAGATAGCGGGAATGGCAAACAGAACGACGCTAGTGGATAATAATAC GTGGAACAATAGTCACATAGCGCTGGTTGGCAAGGCAATGTCTTCAACCG AGGAGAAGTCCTACGAAATTATGACATCTCTTGACGTGGACTACGTTTTG GTGATCTTTGGCGGTGTGATCGGCTATTCTGGCGATGATATCAACAAGTT CCTGTGGATGGTCCGAATTGCTGAGGGAGAGCATCCCAAGGACATTAAGG AAAGCGATTACTTTACCGACCGCGGTGAATTCAGGGTAGATGCCGAAGGT GCTCCGGCCCTGCTCAACTGCCTTATGTACAAATTAAGCTACTACAGATT CGGGGAATTGAAGTTGGACTACAGAGGTCCATCTGGATATGATCGCACAC GTAACGCCGTCATTGGGAATAAGGACTTCGATCTGACCTACCTGGAGGAG GCCTACACCACAGAACACTGGCTTGTTCGCATCTATAGGGTGAAGAAGCC GCATGAGTTCAATAGACCATCACTGAAGACCAAGGAGAGAACGATTCCTC CAGCAAACTTCATTTCGAGAAAGAACTCTAAGCGTCGCAAGGGCTACATA CGAAACCGACCGGTTGTTGTTAAGGGAAAACGAACCTTGAAATAAACCCA AAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
OstStt3-RA | 2833 | OstStt3-RA | 132..2540 | 1..2409 | 12045 | 100 | Plus |
CG1518-RA | 2971 | CG1518-RA | 1933..2181 | 1657..1905 | 330 | 75.5 | Plus |
CG1518.a | 2567 | CG1518.a | 1645..1893 | 1657..1905 | 330 | 75.5 | Plus |
CG1518-RA | 2971 | CG1518-RA | 1429..1521 | 1084..1176 | 210 | 81.7 | Plus |
CG1518-RA | 2971 | CG1518-RA | 614..697 | 269..352 | 195 | 82.1 | Plus |
CG1518.a | 2567 | CG1518.a | 614..697 | 269..352 | 195 | 82.1 | Plus |
CG1518-RA | 2971 | CG1518-RA | 1016..1086 | 671..741 | 160 | 81.6 | Plus |
CG1518.a | 2567 | CG1518.a | 1016..1086 | 671..741 | 160 | 81.6 | Plus |
CG1518-RA | 2971 | CG1518-RA | 2213..2246 | 1937..1970 | 140 | 94.1 | Plus |
CG1518.a | 2567 | CG1518.a | 1925..1958 | 1937..1970 | 140 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20891334..20892796 | 1463..1 | 7285 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 20890557..20891028 | 2124..1653 | 2315 | 99.4 | Minus |
chr3R | 27901430 | chr3R | 20890305..20890506 | 2323..2122 | 965 | 98.5 | Minus |
chr3R | 27901430 | chr3R | 20891085..20891277 | 1653..1461 | 965 | 100 | Minus |
chr3R | 27901430 | chr3R | 20890175..20890252 | 2399..2322 | 375 | 98.7 | Minus |
chrX | 22417052 | chrX | 20915730..20915979 | 1970..1721 | 335 | 75.6 | Minus |
chrX | 22417052 | chrX | 20918193..20918339 | 352..206 | 225 | 76.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25068162..25069624 | 1463..1 | 7315 | 100 | Minus |
3R | 32079331 | 3R | 25067385..25067856 | 2124..1653 | 2360 | 100 | Minus |
3R | 32079331 | 3R | 25067133..25067334 | 2323..2122 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 25067913..25068105 | 1653..1461 | 965 | 100 | Minus |
3R | 32079331 | 3R | 25066993..25067080 | 2409..2322 | 440 | 100 | Minus |
X | 23542271 | X | 21050573..21050822 | 1970..1721 | 335 | 75.6 | Minus |
X | 23542271 | X | 21053036..21053182 | 352..206 | 225 | 76.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24808993..24810455 | 1463..1 | 7315 | 100 | Minus |
3R | 31820162 | 3R | 24808216..24808687 | 2124..1653 | 2360 | 100 | Minus |
3R | 31820162 | 3R | 24807964..24808165 | 2323..2122 | 1010 | 100 | Minus |
3R | 31820162 | 3R | 24808744..24808936 | 1653..1461 | 965 | 100 | Minus |
3R | 31820162 | 3R | 24807824..24807911 | 2409..2322 | 440 | 100 | Minus |
X | 23527363 | X | 21035730..21035914 | 1905..1721 | 250 | 75.6 | Minus |
X | 23527363 | X | 21038128..21038211 | 352..269 | 195 | 82.1 | Minus |
X | 23527363 | X | 21037009..21037092 | 1167..1084 | 180 | 80.9 | Minus |
X | 23527363 | X | 21037641..21037711 | 741..671 | 160 | 81.6 | Minus |
X | 23527363 | X | 21035665..21035698 | 1970..1937 | 140 | 94.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20890175..20890250 | 2324..2399 | 98 | <- | Minus |
chr3R | 20890305..20890503 | 2125..2323 | 98 | <- | Minus |
chr3R | 20890557..20891027 | 1654..2124 | 99 | <- | Minus |
chr3R | 20891085..20891275 | 1463..1653 | 100 | <- | Minus |
chr3R | 20891335..20892796 | 1..1462 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 1..2325 | 71..2395 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 1..2325 | 71..2395 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 1..2325 | 71..2395 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 1..2325 | 71..2395 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 1..2325 | 71..2395 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 27..2425 | 1..2399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 27..2425 | 1..2399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 14..2412 | 1..2399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 27..2425 | 1..2399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
OstStt3-RA | 14..2412 | 1..2399 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25067003..25067078 | 2324..2399 | 100 | <- | Minus |
3R | 25067133..25067331 | 2125..2323 | 100 | <- | Minus |
3R | 25067385..25067855 | 1654..2124 | 100 | <- | Minus |
3R | 25067913..25068103 | 1463..1653 | 100 | <- | Minus |
3R | 25068163..25069624 | 1..1462 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25067003..25067078 | 2324..2399 | 100 | <- | Minus |
3R | 25067133..25067331 | 2125..2323 | 100 | <- | Minus |
3R | 25067385..25067855 | 1654..2124 | 100 | <- | Minus |
3R | 25067913..25068103 | 1463..1653 | 100 | <- | Minus |
3R | 25068163..25069624 | 1..1462 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25067003..25067078 | 2324..2399 | 100 | <- | Minus |
3R | 25067133..25067331 | 2125..2323 | 100 | <- | Minus |
3R | 25067385..25067855 | 1654..2124 | 100 | <- | Minus |
3R | 25067913..25068103 | 1463..1653 | 100 | <- | Minus |
3R | 25068163..25069624 | 1..1462 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20892855..20893053 | 2125..2323 | 100 | <- | Minus |
arm_3R | 20892725..20892800 | 2324..2399 | 100 | <- | Minus |
arm_3R | 20893107..20893577 | 1654..2124 | 100 | <- | Minus |
arm_3R | 20893635..20893825 | 1463..1653 | 100 | <- | Minus |
arm_3R | 20893885..20895346 | 1..1462 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24808216..24808686 | 1654..2124 | 100 | <- | Minus |
3R | 24808744..24808934 | 1463..1653 | 100 | <- | Minus |
3R | 24808994..24810455 | 1..1462 | 100 | Minus | |
3R | 24807834..24807909 | 2324..2399 | 100 | <- | Minus |
3R | 24807964..24808162 | 2125..2323 | 100 | <- | Minus |
Translation from 0 to 2394
> GM01838.hyp LSEECVVAFQIGYNFRVTGWNWDMNRTPKMLNSKVAGYSSLITFAILLIA WLAGFSSRLFAVIRFESIIHEFDPWFNYRATAYMVQNGWYNFLNWFDERA WYPLGRIVGGTVYPGLMITSGGIHWLLHVLNIPVHIRDICVFLAPIFSGL TSISTYLLTKELWSAGAGLFAASFIAIVPGYISRSVAGSYDNEGIAIFAL QFTYFLWVRSVKTGSVFWSAAAALSYFYMVSAWGGYVFIINLIPLHVFVL LIMGRYSPRLLTSYSTFYILGLLFSMQIPFVGFQPIRTSEHMAALGVFVL LMAVATLRHLQSVLSRNEFRKLFIVGGLLVGVGVFVAVVVLTMLGVVAPW SGRFYSLWDTGYAKIHIPIIASVSEHQPTTWFSFFFDLHILVCAFPVGVW YCIKQINDERVFVVLYAISAVYFAGVMVRLMLTLTPVVCMLAGVAFSGLL DVFLQEDSSKRMGTAISAATEVDEAEDSIEKKTLYDKAGKLKHRTKHDAQ QDTGVSSNLKSIVILAVLMLLMMFAVHCTWVTSNAYSSPSIVLAFHNSQD GSRNILDDFREAYYWLSQNTADDARVMSWWDYGYQIAGMANRTTLVDNNT WNNSHIALVGKAMSSTEEKSYEIMTSLDVDYVLVIFGGVIGYSGDDINKF LWMVRIAEGEHPKDIKESDYFTDRGEFRVDAEGAPALLNCLMYKLSYYRF GELKLDYRGPSGYDRTRNAVIGNKDFDLTYLEEAYTTEHWLVRIYRVKKP HEFNRPSLKTKERTIPPANFISRKNSKRRKGYIRNRPVVVKGKRTLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
OstStt3-PA | 774 | CG7748-PA | 1..774 | 24..797 | 4046 | 100 | Plus |
CG1518-PC | 713 | CG1518-PC | 21..706 | 41..748 | 2202 | 58.1 | Plus |
CG1518-PA | 713 | CG1518-PA | 21..706 | 41..748 | 2202 | 58.1 | Plus |
Translation from 70 to 2394
> GM01838.pep MNRTPKMLNSKVAGYSSLITFAILLIAWLAGFSSRLFAVIRFESIIHEFD PWFNYRATAYMVQNGWYNFLNWFDERAWYPLGRIVGGTVYPGLMITSGGI HWLLHVLNIPVHIRDICVFLAPIFSGLTSISTYLLTKELWSAGAGLFAAS FIAIVPGYISRSVAGSYDNEGIAIFALQFTYFLWVRSVKTGSVFWSAAAA LSYFYMVSAWGGYVFIINLIPLHVFVLLIMGRYSPRLLTSYSTFYILGLL FSMQIPFVGFQPIRTSEHMAALGVFVLLMAVATLRHLQSVLSRNEFRKLF IVGGLLVGVGVFVAVVVLTMLGVVAPWSGRFYSLWDTGYAKIHIPIIASV SEHQPTTWFSFFFDLHILVCAFPVGVWYCIKQINDERVFVVLYAISAVYF AGVMVRLMLTLTPVVCMLAGVAFSGLLDVFLQEDSSKRMGTAISAATEVD EAEDSIEKKTLYDKAGKLKHRTKHDAQQDTGVSSNLKSIVILAVLMLLMM FAVHCTWVTSNAYSSPSIVLAFHNSQDGSRNILDDFREAYYWLSQNTADD ARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSTEEKSYEI MTSLDVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDIKESDYFTD RGEFRVDAEGAPALLNCLMYKLSYYRFGELKLDYRGPSGYDRTRNAVIGN KDFDLTYLEEAYTTEHWLVRIYRVKKPHEFNRPSLKTKERTIPPANFISR KNSKRRKGYIRNRPVVVKGKRTLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17105-PA | 774 | GF17105-PA | 1..774 | 1..774 | 4050 | 97.7 | Plus |
Dana\GF21857-PA | 713 | GF21857-PA | 21..706 | 18..725 | 2215 | 58.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12291-PA | 774 | GG12291-PA | 1..774 | 1..774 | 4117 | 99.6 | Plus |
Dere\GG17558-PA | 713 | GG17558-PA | 21..706 | 18..725 | 2230 | 58.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19585-PA | 774 | GH19585-PA | 1..774 | 1..774 | 3816 | 92 | Plus |
Dgri\GH12900-PA | 719 | GH12900-PA | 28..712 | 18..725 | 2218 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Stt3B-PA | 774 | CG7748-PA | 1..774 | 1..774 | 4046 | 100 | Plus |
Stt3A-PC | 713 | CG1518-PC | 21..706 | 18..725 | 2202 | 58.1 | Plus |
Stt3A-PA | 713 | CG1518-PA | 21..706 | 18..725 | 2202 | 58.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23816-PA | 774 | GI23816-PA | 1..774 | 1..774 | 3830 | 92.4 | Plus |
Dmoj\GI14454-PA | 719 | GI14454-PA | 28..712 | 18..725 | 2226 | 58.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21896-PA | 774 | GL21896-PA | 1..774 | 1..774 | 3908 | 95.3 | Plus |
Dper\GL16584-PA | 672 | GL16584-PA | 205..665 | 246..725 | 1276 | 53.6 | Plus |
Dper\GL16584-PA | 672 | GL16584-PA | 49..217 | 18..186 | 612 | 63.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22539-PA | 774 | GA22539-PA | 1..774 | 1..774 | 3904 | 95.3 | Plus |
Dpse\GA22298-PA | 720 | GA22298-PA | 43..713 | 32..725 | 2199 | 59.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17756-PA | 774 | GM17756-PA | 1..774 | 1..774 | 4107 | 99.7 | Plus |
Dsec\GM22642-PA | 713 | GM22642-PA | 21..706 | 18..725 | 2220 | 58.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18237-PA | 742 | GD18237-PA | 1..731 | 1..751 | 3845 | 97.1 | Plus |
Dsim\GD24643-PA | 511 | GD24643-PA | 21..506 | 18..549 | 1353 | 50.1 | Plus |
Dsim\GD13502-PA | 143 | GD13502-PA | 15..136 | 605..725 | 445 | 66.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23594-PA | 774 | GJ23594-PA | 1..774 | 1..774 | 3793 | 91.3 | Plus |
Dvir\GJ18789-PA | 719 | GJ18789-PA | 28..712 | 18..725 | 2218 | 58.1 | Plus |