Clone GM01838 Report

Search the DGRC for GM01838

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:18
Well:38
Vector:pBS SK-
Associated Gene/TranscriptOstStt3-RA
Protein status:GM01838.pep: gold
Preliminary Size:2699
Sequenced Size:2417

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7748 2001-01-01 Release 2 assignment
CG7748 2002-12-11 Blastp of sequenced clone
CG7748 2003-01-01 Sim4 clustering to Release 3
OstStt3 2008-04-29 Release 5.5 accounting
OstStt3 2008-08-15 Release 5.9 accounting
OstStt3 2008-12-18 5.12 accounting

Clone Sequence Records

GM01838.complete Sequence

2417 bp (2417 high quality bases) assembled on 2002-12-11

GenBank Submission: AF132552

> GM01838.complete
TCTAAGCGAAGAATGTGTCGTTGCATTTCAGATCGGTTATAATTTTCGAG
TTACTGGCTGGAATTGGGACATGAATCGGACGCCGAAGATGCTGAACAGC
AAGGTGGCTGGCTACAGCAGCCTAATCACCTTCGCCATCCTGCTAATCGC
CTGGCTGGCCGGATTTTCCTCTCGCCTCTTCGCCGTCATCCGTTTCGAGT
CGATTATCCATGAGTTTGATCCGTGGTTCAACTACCGGGCCACCGCCTAC
ATGGTGCAGAATGGTTGGTACAACTTCCTCAACTGGTTCGACGAGCGCGC
ATGGTATCCGCTCGGCAGGATTGTGGGCGGTACCGTCTATCCCGGCCTGA
TGATTACGTCCGGCGGAATCCATTGGCTGCTGCACGTACTCAACATACCG
GTCCATATTCGTGACATCTGCGTGTTCCTGGCGCCGATCTTCAGTGGCCT
GACCTCCATCTCCACCTACCTGCTGACCAAGGAGCTGTGGTCCGCGGGCG
CCGGCCTCTTCGCCGCCAGCTTCATCGCCATCGTGCCTGGCTACATCAGT
AGGTCGGTGGCTGGATCGTACGATAACGAGGGCATTGCCATATTCGCCCT
GCAGTTCACCTACTTCCTGTGGGTGCGCTCAGTGAAGACTGGATCCGTGT
TCTGGTCGGCCGCAGCCGCTTTGTCCTACTTCTACATGGTGTCCGCCTGG
GGTGGCTACGTGTTCATCATCAACCTGATACCCCTGCACGTCTTCGTACT
GCTCATTATGGGCAGGTACTCGCCGCGTCTGCTGACCAGCTACAGCACCT
TCTACATCCTGGGACTGCTGTTCTCCATGCAGATCCCCTTCGTGGGATTC
CAACCGATACGCACCAGTGAACACATGGCTGCGCTGGGAGTGTTTGTGCT
CCTTATGGCCGTGGCCACCTTGCGCCATTTGCAGTCCGTGCTGTCGCGCA
ACGAGTTCCGGAAGCTGTTCATCGTCGGCGGATTGCTGGTGGGCGTTGGC
GTCTTTGTGGCCGTCGTGGTGCTCACCATGCTGGGCGTTGTGGCCCCGTG
GAGTGGACGCTTCTACTCGCTGTGGGATACTGGCTACGCCAAGATCCACA
TTCCCATCATTGCATCCGTGTCGGAGCATCAGCCCACCACTTGGTTCTCG
TTCTTCTTTGATCTGCACATCCTGGTGTGCGCCTTCCCAGTGGGAGTGTG
GTACTGCATCAAGCAGATCAACGACGAGCGCGTTTTCGTGGTGCTGTACG
CCATCAGTGCGGTTTACTTCGCTGGTGTGATGGTGCGTTTGATGTTGACC
CTCACGCCGGTGGTGTGCATGCTGGCCGGAGTGGCCTTTTCGGGACTGTT
GGATGTGTTCCTGCAAGAGGATTCGTCTAAGCGAATGGGCACAGCCATAA
GCGCAGCCACCGAAGTGGATGAAGCTGAGGATTCCATTGAGAAGAAGACG
CTGTACGACAAGGCTGGCAAGCTGAAGCATCGTACTAAGCATGATGCCCA
GCAGGATACTGGCGTCAGCTCCAACCTGAAGAGTATTGTTATTTTGGCCG
TTCTAATGCTGTTGATGATGTTCGCTGTCCACTGCACGTGGGTGACCAGC
AATGCCTACTCCAGTCCCTCCATTGTCTTGGCTTTCCACAACAGTCAAGA
TGGATCCCGCAACATTTTAGACGATTTCAGAGAGGCTTACTACTGGCTTT
CGCAGAACACTGCCGATGATGCTCGCGTTATGTCTTGGTGGGATTACGGA
TACCAGATAGCGGGAATGGCAAACAGAACGACGCTAGTGGATAATAATAC
GTGGAACAATAGTCACATAGCGCTGGTTGGCAAGGCAATGTCTTCAACCG
AGGAGAAGTCCTACGAAATTATGACATCTCTTGACGTGGACTACGTTTTG
GTGATCTTTGGCGGTGTGATCGGCTATTCTGGCGATGATATCAACAAGTT
CCTGTGGATGGTCCGAATTGCTGAGGGAGAGCATCCCAAGGACATTAAGG
AAAGCGATTACTTTACCGACCGCGGTGAATTCAGGGTAGATGCCGAAGGT
GCTCCGGCCCTGCTCAACTGCCTTATGTACAAATTAAGCTACTACAGATT
CGGGGAATTGAAGTTGGACTACAGAGGTCCATCTGGATATGATCGCACAC
GTAACGCCGTCATTGGGAATAAGGACTTCGATCTGACCTACCTGGAGGAG
GCCTACACCACAGAACACTGGCTTGTTCGCATCTATAGGGTGAAGAAGCC
GCATGAGTTCAATAGACCATCACTGAAGACCAAGGAGAGAACGATTCCTC
CAGCAAACTTCATTTCGAGAAAGAACTCTAAGCGTCGCAAGGGCTACATA
CGAAACCGACCGGTTGTTGTTAAGGGAAAACGAACCTTGAAATAAACCCA
AAAAAAAAAAAAAAAAA

GM01838.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
OstStt3-RA 2833 OstStt3-RA 132..2540 1..2409 12045 100 Plus
CG1518-RA 2971 CG1518-RA 1933..2181 1657..1905 330 75.5 Plus
CG1518.a 2567 CG1518.a 1645..1893 1657..1905 330 75.5 Plus
CG1518-RA 2971 CG1518-RA 1429..1521 1084..1176 210 81.7 Plus
CG1518-RA 2971 CG1518-RA 614..697 269..352 195 82.1 Plus
CG1518.a 2567 CG1518.a 614..697 269..352 195 82.1 Plus
CG1518-RA 2971 CG1518-RA 1016..1086 671..741 160 81.6 Plus
CG1518.a 2567 CG1518.a 1016..1086 671..741 160 81.6 Plus
CG1518-RA 2971 CG1518-RA 2213..2246 1937..1970 140 94.1 Plus
CG1518.a 2567 CG1518.a 1925..1958 1937..1970 140 94.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20891334..20892796 1463..1 7285 99.9 Minus
chr3R 27901430 chr3R 20890557..20891028 2124..1653 2315 99.4 Minus
chr3R 27901430 chr3R 20890305..20890506 2323..2122 965 98.5 Minus
chr3R 27901430 chr3R 20891085..20891277 1653..1461 965 100 Minus
chr3R 27901430 chr3R 20890175..20890252 2399..2322 375 98.7 Minus
chrX 22417052 chrX 20915730..20915979 1970..1721 335 75.6 Minus
chrX 22417052 chrX 20918193..20918339 352..206 225 76.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:13:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25068162..25069624 1463..1 7315 100 Minus
3R 32079331 3R 25067385..25067856 2124..1653 2360 100 Minus
3R 32079331 3R 25067133..25067334 2323..2122 1010 100 Minus
3R 32079331 3R 25067913..25068105 1653..1461 965 100 Minus
3R 32079331 3R 25066993..25067080 2409..2322 440 100 Minus
X 23542271 X 21050573..21050822 1970..1721 335 75.6 Minus
X 23542271 X 21053036..21053182 352..206 225 76.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24808993..24810455 1463..1 7315 100 Minus
3R 31820162 3R 24808216..24808687 2124..1653 2360 100 Minus
3R 31820162 3R 24807964..24808165 2323..2122 1010 100 Minus
3R 31820162 3R 24808744..24808936 1653..1461 965 100 Minus
3R 31820162 3R 24807824..24807911 2409..2322 440 100 Minus
X 23527363 X 21035730..21035914 1905..1721 250 75.6 Minus
X 23527363 X 21038128..21038211 352..269 195 82.1 Minus
X 23527363 X 21037009..21037092 1167..1084 180 80.9 Minus
X 23527363 X 21037641..21037711 741..671 160 81.6 Minus
X 23527363 X 21035665..21035698 1970..1937 140 94.1 Minus
Blast to na_te.dros performed on 2019-03-16 15:54:59 has no hits.

GM01838.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:55:54 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20890175..20890250 2324..2399 98 <- Minus
chr3R 20890305..20890503 2125..2323 98 <- Minus
chr3R 20890557..20891027 1654..2124 99 <- Minus
chr3R 20891085..20891275 1463..1653 100 <- Minus
chr3R 20891335..20892796 1..1462 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:01:25 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 1..2325 71..2395 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:23 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 1..2325 71..2395 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:57:11 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 1..2325 71..2395 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:56 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 1..2325 71..2395 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:56:29 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 1..2325 71..2395 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:37 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 27..2425 1..2399 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:23 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 27..2425 1..2399 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:57:11 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 14..2412 1..2399 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:56 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 27..2425 1..2399 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:56:29 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
OstStt3-RA 14..2412 1..2399 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:55:54 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25067003..25067078 2324..2399 100 <- Minus
3R 25067133..25067331 2125..2323 100 <- Minus
3R 25067385..25067855 1654..2124 100 <- Minus
3R 25067913..25068103 1463..1653 100 <- Minus
3R 25068163..25069624 1..1462 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:55:54 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25067003..25067078 2324..2399 100 <- Minus
3R 25067133..25067331 2125..2323 100 <- Minus
3R 25067385..25067855 1654..2124 100 <- Minus
3R 25067913..25068103 1463..1653 100 <- Minus
3R 25068163..25069624 1..1462 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:55:54 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25067003..25067078 2324..2399 100 <- Minus
3R 25067133..25067331 2125..2323 100 <- Minus
3R 25067385..25067855 1654..2124 100 <- Minus
3R 25067913..25068103 1463..1653 100 <- Minus
3R 25068163..25069624 1..1462 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:57:11 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20892855..20893053 2125..2323 100 <- Minus
arm_3R 20892725..20892800 2324..2399 100 <- Minus
arm_3R 20893107..20893577 1654..2124 100 <- Minus
arm_3R 20893635..20893825 1463..1653 100 <- Minus
arm_3R 20893885..20895346 1..1462 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:43 Download gff for GM01838.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24808216..24808686 1654..2124 100 <- Minus
3R 24808744..24808934 1463..1653 100 <- Minus
3R 24808994..24810455 1..1462 100   Minus
3R 24807834..24807909 2324..2399 100 <- Minus
3R 24807964..24808162 2125..2323 100 <- Minus

GM01838.hyp Sequence

Translation from 0 to 2394

> GM01838.hyp
LSEECVVAFQIGYNFRVTGWNWDMNRTPKMLNSKVAGYSSLITFAILLIA
WLAGFSSRLFAVIRFESIIHEFDPWFNYRATAYMVQNGWYNFLNWFDERA
WYPLGRIVGGTVYPGLMITSGGIHWLLHVLNIPVHIRDICVFLAPIFSGL
TSISTYLLTKELWSAGAGLFAASFIAIVPGYISRSVAGSYDNEGIAIFAL
QFTYFLWVRSVKTGSVFWSAAAALSYFYMVSAWGGYVFIINLIPLHVFVL
LIMGRYSPRLLTSYSTFYILGLLFSMQIPFVGFQPIRTSEHMAALGVFVL
LMAVATLRHLQSVLSRNEFRKLFIVGGLLVGVGVFVAVVVLTMLGVVAPW
SGRFYSLWDTGYAKIHIPIIASVSEHQPTTWFSFFFDLHILVCAFPVGVW
YCIKQINDERVFVVLYAISAVYFAGVMVRLMLTLTPVVCMLAGVAFSGLL
DVFLQEDSSKRMGTAISAATEVDEAEDSIEKKTLYDKAGKLKHRTKHDAQ
QDTGVSSNLKSIVILAVLMLLMMFAVHCTWVTSNAYSSPSIVLAFHNSQD
GSRNILDDFREAYYWLSQNTADDARVMSWWDYGYQIAGMANRTTLVDNNT
WNNSHIALVGKAMSSTEEKSYEIMTSLDVDYVLVIFGGVIGYSGDDINKF
LWMVRIAEGEHPKDIKESDYFTDRGEFRVDAEGAPALLNCLMYKLSYYRF
GELKLDYRGPSGYDRTRNAVIGNKDFDLTYLEEAYTTEHWLVRIYRVKKP
HEFNRPSLKTKERTIPPANFISRKNSKRRKGYIRNRPVVVKGKRTLK*

GM01838.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
OstStt3-PA 774 CG7748-PA 1..774 24..797 4046 100 Plus
CG1518-PC 713 CG1518-PC 21..706 41..748 2202 58.1 Plus
CG1518-PA 713 CG1518-PA 21..706 41..748 2202 58.1 Plus

GM01838.pep Sequence

Translation from 70 to 2394

> GM01838.pep
MNRTPKMLNSKVAGYSSLITFAILLIAWLAGFSSRLFAVIRFESIIHEFD
PWFNYRATAYMVQNGWYNFLNWFDERAWYPLGRIVGGTVYPGLMITSGGI
HWLLHVLNIPVHIRDICVFLAPIFSGLTSISTYLLTKELWSAGAGLFAAS
FIAIVPGYISRSVAGSYDNEGIAIFALQFTYFLWVRSVKTGSVFWSAAAA
LSYFYMVSAWGGYVFIINLIPLHVFVLLIMGRYSPRLLTSYSTFYILGLL
FSMQIPFVGFQPIRTSEHMAALGVFVLLMAVATLRHLQSVLSRNEFRKLF
IVGGLLVGVGVFVAVVVLTMLGVVAPWSGRFYSLWDTGYAKIHIPIIASV
SEHQPTTWFSFFFDLHILVCAFPVGVWYCIKQINDERVFVVLYAISAVYF
AGVMVRLMLTLTPVVCMLAGVAFSGLLDVFLQEDSSKRMGTAISAATEVD
EAEDSIEKKTLYDKAGKLKHRTKHDAQQDTGVSSNLKSIVILAVLMLLMM
FAVHCTWVTSNAYSSPSIVLAFHNSQDGSRNILDDFREAYYWLSQNTADD
ARVMSWWDYGYQIAGMANRTTLVDNNTWNNSHIALVGKAMSSTEEKSYEI
MTSLDVDYVLVIFGGVIGYSGDDINKFLWMVRIAEGEHPKDIKESDYFTD
RGEFRVDAEGAPALLNCLMYKLSYYRFGELKLDYRGPSGYDRTRNAVIGN
KDFDLTYLEEAYTTEHWLVRIYRVKKPHEFNRPSLKTKERTIPPANFISR
KNSKRRKGYIRNRPVVVKGKRTLK*

GM01838.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17105-PA 774 GF17105-PA 1..774 1..774 4050 97.7 Plus
Dana\GF21857-PA 713 GF21857-PA 21..706 18..725 2215 58.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12291-PA 774 GG12291-PA 1..774 1..774 4117 99.6 Plus
Dere\GG17558-PA 713 GG17558-PA 21..706 18..725 2230 58.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19585-PA 774 GH19585-PA 1..774 1..774 3816 92 Plus
Dgri\GH12900-PA 719 GH12900-PA 28..712 18..725 2218 58.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
Stt3B-PA 774 CG7748-PA 1..774 1..774 4046 100 Plus
Stt3A-PC 713 CG1518-PC 21..706 18..725 2202 58.1 Plus
Stt3A-PA 713 CG1518-PA 21..706 18..725 2202 58.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23816-PA 774 GI23816-PA 1..774 1..774 3830 92.4 Plus
Dmoj\GI14454-PA 719 GI14454-PA 28..712 18..725 2226 58.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21896-PA 774 GL21896-PA 1..774 1..774 3908 95.3 Plus
Dper\GL16584-PA 672 GL16584-PA 205..665 246..725 1276 53.6 Plus
Dper\GL16584-PA 672 GL16584-PA 49..217 18..186 612 63.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22539-PA 774 GA22539-PA 1..774 1..774 3904 95.3 Plus
Dpse\GA22298-PA 720 GA22298-PA 43..713 32..725 2199 59.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17756-PA 774 GM17756-PA 1..774 1..774 4107 99.7 Plus
Dsec\GM22642-PA 713 GM22642-PA 21..706 18..725 2220 58.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18237-PA 742 GD18237-PA 1..731 1..751 3845 97.1 Plus
Dsim\GD24643-PA 511 GD24643-PA 21..506 18..549 1353 50.1 Plus
Dsim\GD13502-PA 143 GD13502-PA 15..136 605..725 445 66.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23594-PA 774 GJ23594-PA 1..774 1..774 3793 91.3 Plus
Dvir\GJ18789-PA 719 GJ18789-PA 28..712 18..725 2218 58.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13408-PA 774 GK13408-PA 1..774 1..774 3890 94.8 Plus
Dwil\GK10089-PA 709 GK10089-PA 18..702 18..725 2216 58.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:49:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10744-PA 774 GE10744-PA 1..774 1..774 4110 99.5 Plus
Dyak\GE15319-PA 713 GE15319-PA 21..706 18..725 2228 58.1 Plus