Clone GM01939 Report

Search the DGRC for GM01939

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:19
Well:39
Vector:pBS SK-
Associated Gene/TranscriptCG9992-RA
Protein status:GM01939.pep: gold
Preliminary Size:1649
Sequenced Size:1586

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9992 2001-01-01 Release 2 assignment
CG9992 2001-10-10 Blastp of sequenced clone
CG9992 2003-01-01 Sim4 clustering to Release 3
CG9992 2008-04-29 Release 5.5 accounting
CG9992 2008-08-15 Release 5.9 accounting
CG9992 2008-12-18 5.12 accounting

Clone Sequence Records

GM01939.complete Sequence

1586 bp (1586 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060837

> GM01939.complete
ATGAGCTCGGGTCCTTAAACAAATAAAGTAATGTAACGTGAAGTTATAGA
TCCCCTTCCAATTGCGGCGATAAGTTCCCACGGTGTTAACATAACAAAGA
CAACACTCAAAGAAATTCGTCGACTTTCTAACTGTGAATCTCAAACCATA
TCACGGCTTATATGTACATATATTGAAGTCCACATACGATAGTATATATA
CGTATATATTTACTTGGCTTACACAAATGCTTTATTTGCACAAAACCTTG
TGATATTGAGGTCAATATCTGAGGAGAAAAGTATACGATTTTCAGATGGC
TTCCAACTCAACGAAGAAAAGCAAACCGAGCGGTATGCGCATATTGTGGA
TACCGGGCCGAAAGTCCCATTCCAAGGGTCGTTTTAATGCCACCAACAAG
CATATCTCGTACTCGGGTCCACAGAAAAAGAGCGAAGTATGGTCCTTGGG
CGGCAGCAAGGCTCAGGCCGAGCTGATTGATTTTCCCTCCACCGATTTGT
CTGCCAACTCACCATCATCGTCGCTGAGCATTGTGGCCACCTGTTCGCTG
GTTCAAGGATGCGCAAACAGCGATAGAGCATCCTCTGAGGACTTGGCCAT
CGTTTCGGAGACTGCCACACTGCCGACTACGCCTGTGAGCCCGAACTCAC
CGATCCCGTATAGTCCTACTTCCGAGACTGCAACCGCATCCACGCGAGCC
ATGACTTCGCCCAGCGTGATCACCACCGTTGTAATACAGGACTTGCACAA
CTTTGTAAGCCCCGAGGATTTGCCGAAGGTGCCAAGTTTTCCAGCAGCAC
AGGACACCGATGTGGTGCTAAATAGCTCTGCGGGAACCACAGCATCGATA
GCAACCGATTCTTCGCCACTGGCTAATCATAAGCCGGGCTCGTCGCCGCC
CGCATCACATTCCCAGCAAACAACGCCACAGAAAAGTAGATATAAGAACC
ACAACAACAATCAGGAGGATATCAATTCGATCGAAACCATTTCCAGTTTA
ACCAGGTTTCAGGGAAACGCCACAGACTTCGATTGGATCGACGAAATGGT
GGGACAGCGAAACACCAACGAACTGATACATGCGAATAAGCGAAAGATGT
CCAAAAAGGTGGAGGGCCTGGCCGCCGACCAGTTGGATGCCAAATCGTTA
GGCTATGACAATGACAAGGCCAAATTGAATCGCAAGGAGTACGATGACAA
CGATGAGAAAGTCGTTAAATGCTTGTACTACTCACTGATGTGCTGCGACT
GTACTATATCTTAAATGGATCGCATCTTAAATACGGATCCGCGTCCATGT
AATATACCTCTCAGCCAACTATGTAAAAATATATATATTCGATTTTGTAT
ACTTAGCGTACGCAGCTAAATAGGACAGAAGAAGACATAAGTATTAACGA
ATTTCTAATGATTTACAAGGAAAAACTAACATTATGAAAATTCTGAAATC
CAAAACTACATGGCTACAATAATTTGGCTTGAATATTGAAATAAGTGATC
GAAACACATATATATTTAAATATGTAGATATTTTCTATTTTTGTAAATAA
AACATTTTCTACCAACCGAAAAAAAAAAAAAAAAAA

GM01939.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-RD 1605 CG9992-RD 35..1605 1..1571 7855 100 Plus
CG9992-RA 1627 CG9992-RA 350..1627 294..1571 6390 100 Plus
CG9992-RB 1439 CG9992-RB 352..1439 484..1571 5440 100 Plus
CG9992-RB 1439 CG9992-RB 71..352 1..282 1410 100 Plus
CG9992-RA 1627 CG9992-RA 71..351 1..281 1405 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16271661..16272272 1568..957 3045 99.8 Minus
chrX 22417052 chrX 16274295..16274575 281..1 1405 100 Minus
chrX 22417052 chrX 16272613..16272874 745..484 1310 100 Minus
chrX 22417052 chrX 16272331..16272551 965..745 1105 100 Minus
chrX 22417052 chrX 16273031..16273234 483..280 1020 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:14:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16381951..16382565 1571..957 3060 99.8 Minus
X 23542271 X 16384588..16384868 281..1 1405 100 Minus
X 23542271 X 16382906..16383167 745..484 1310 100 Minus
X 23542271 X 16382624..16382844 965..745 1105 100 Minus
X 23542271 X 16383324..16383527 483..280 1020 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16390049..16390663 1571..957 3060 99.8 Minus
X 23527363 X 16392686..16392966 281..1 1405 100 Minus
X 23527363 X 16391004..16391265 745..484 1310 100 Minus
X 23527363 X 16390722..16390942 965..745 1105 100 Minus
X 23527363 X 16391422..16391625 483..280 1020 100 Minus
Blast to na_te.dros performed 2019-03-16 23:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2596..2684 899..989 116 64.5 Plus

GM01939.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:50:05 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16271661..16272264 965..1568 100 <- Minus
chrX 16272332..16272550 746..964 100 <- Minus
chrX 16272613..16272874 484..745 100 <- Minus
chrX 16273031..16273232 282..483 100 <- Minus
chrX 16274295..16274575 1..281 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:01:33 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RE 1..969 296..1264 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:35 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RE 1..969 296..1264 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:51:25 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 1..969 296..1264 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:31 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RE 1..969 296..1264 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:11 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 1..969 296..1264 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:23:34 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 1..1568 1..1568 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:35 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 1..1568 1..1568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:25 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 41..1608 1..1568 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:31 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 1..1568 1..1568 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:11 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
CG9992-RD 41..1608 1..1568 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:05 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
X 16381954..16382557 965..1568 100 <- Minus
X 16382625..16382843 746..964 100 <- Minus
X 16382906..16383167 484..745 100 <- Minus
X 16383324..16383525 282..483 100 <- Minus
X 16384588..16384868 1..281 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:05 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
X 16381954..16382557 965..1568 100 <- Minus
X 16382625..16382843 746..964 100 <- Minus
X 16382906..16383167 484..745 100 <- Minus
X 16383324..16383525 282..483 100 <- Minus
X 16384588..16384868 1..281 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:05 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
X 16381954..16382557 965..1568 100 <- Minus
X 16382625..16382843 746..964 100 <- Minus
X 16382906..16383167 484..745 100 <- Minus
X 16383324..16383525 282..483 100 <- Minus
X 16384588..16384868 1..281 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:25 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16276658..16276876 746..964 100 <- Minus
arm_X 16275987..16276590 965..1568 100 <- Minus
arm_X 16276939..16277200 484..745 100 <- Minus
arm_X 16277357..16277558 282..483 100 <- Minus
arm_X 16278621..16278901 1..281 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:43 Download gff for GM01939.complete
Subject Subject Range Query Range Percent Splice Strand
X 16391422..16391623 282..483 100 <- Minus
X 16391004..16391265 484..745 100 <- Minus
X 16390052..16390655 965..1568 100 <- Minus
X 16390723..16390941 746..964 100 <- Minus
X 16392686..16392966 1..281 100   Minus

GM01939.pep Sequence

Translation from 295 to 1263

> GM01939.pep
MASNSTKKSKPSGMRILWIPGRKSHSKGRFNATNKHISYSGPQKKSEVWS
LGGSKAQAELIDFPSTDLSANSPSSSLSIVATCSLVQGCANSDRASSEDL
AIVSETATLPTTPVSPNSPIPYSPTSETATASTRAMTSPSVITTVVIQDL
HNFVSPEDLPKVPSFPAAQDTDVVLNSSAGTTASIATDSSPLANHKPGSS
PPASHSQQTTPQKSRYKNHNNNQEDINSIETISSLTRFQGNATDFDWIDE
MVGQRNTNELIHANKRKMSKKVEGLAADQLDAKSLGYDNDKAKLNRKEYD
DNDEKVVKCLYYSLMCCDCTIS*

GM01939.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19571-PA 320 GF19571-PA 1..320 1..322 939 68.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19327-PA 322 GG19327-PA 1..322 1..322 1381 89.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12032-PA 319 GH12032-PA 12..319 13..322 783 57.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-PC 322 CG9992-PC 1..322 1..322 1663 100 Plus
CG9992-PE 322 CG9992-PE 1..322 1..322 1663 100 Plus
CG9992-PD 322 CG9992-PD 1..322 1..322 1663 100 Plus
CG9992-PA 322 CG9992-PA 1..322 1..322 1663 100 Plus
CG9992-PB 187 CG9992-PB 1..187 136..322 978 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14306-PA 327 GI14306-PA 1..327 1..322 815 57.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15891-PA 64 GL15891-PA 1..64 1..63 235 78.1 Plus
Dper\GL15892-PA 56 GL15892-PA 8..56 270..322 139 54.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22172-PA 324 GA22172-PA 1..324 1..322 943 65.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13405-PA 322 GM13405-PA 1..322 1..322 1509 92.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15752-PA 518 GD15752-PA 1..244 1..244 1162 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:42:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19363-PA 325 GJ19363-PA 1..325 1..322 818 58.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:42:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10061-PA 344 GK10061-PA 1..344 1..322 751 56.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:42:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15973-PA 322 GE15973-PA 1..322 1..322 1399 90.4 Plus

GM01939.hyp Sequence

Translation from 295 to 1263

> GM01939.hyp
MASNSTKKSKPSGMRILWIPGRKSHSKGRFNATNKHISYSGPQKKSEVWS
LGGSKAQAELIDFPSTDLSANSPSSSLSIVATCSLVQGCANSDRASSEDL
AIVSETATLPTTPVSPNSPIPYSPTSETATASTRAMTSPSVITTVVIQDL
HNFVSPEDLPKVPSFPAAQDTDVVLNSSAGTTASIATDSSPLANHKPGSS
PPASHSQQTTPQKSRYKNHNNNQEDINSIETISSLTRFQGNATDFDWIDE
MVGQRNTNELIHANKRKMSKKVEGLAADQLDAKSLGYDNDKAKLNRKEYD
DNDEKVVKCLYYSLMCCDCTIS*

GM01939.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG9992-PC 322 CG9992-PC 1..322 1..322 1663 100 Plus
CG9992-PE 322 CG9992-PE 1..322 1..322 1663 100 Plus
CG9992-PD 322 CG9992-PD 1..322 1..322 1663 100 Plus
CG9992-PA 322 CG9992-PA 1..322 1..322 1663 100 Plus
CG9992-PB 187 CG9992-PB 1..187 136..322 978 100 Plus