Clone GM02147 Report

Search the DGRC for GM02147

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:21
Well:47
Vector:pBS SK-
Associated Gene/TranscripteIF5-RA
Protein status:GM02147.pep: gold
Preliminary Size:2586
Sequenced Size:2611

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9177 2001-10-10 Blastp of sequenced clone
CG9177 2003-01-01 Sim4 clustering to Release 3
eIF5 2008-04-29 Release 5.5 accounting
eIF5 2008-08-15 Release 5.9 accounting
eIF5 2008-12-18 5.12 accounting

Clone Sequence Records

GM02147.complete Sequence

2611 bp (2611 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060843

> GM02147.complete
CCCACTAAAGTCGTTATGGTCATATTGTGCTGTGACGTTTAGTCGTATGT
TCGTGGACTTCGGAGAAAATCTTTTCTTAAACGGTTAATTCAGTAAAATT
ATTAATTTACTTTCATTGTGATCAGAAACGCTTTATAGAAAACTTGTGGA
AAAGAATAGTTGAGAGACCAAAAATTTCAATTTTTGCGATACATAAGCGC
GTTAAAAGCGTTACTAATATTTTTCAATATTAGCACGGAATCAGAGCTAT
CAAAAAAAAAAAAAAGTTATCGATTTCCCGTGGCAGTGCGATTTGTTTGA
TTTTGATTTATCCATATATATTTTCCAAGTCAATTTGCGATTGACTTCAC
AAAGAATACCCGAGAGTACGATATCTTTGTCTAATTTGCGAACTGGCATT
GCGCACCCCAAAGGAGGGGAAACAAAATCTTATATGACTTTTGAAAGATA
CGGTGAAACACCAGCAAAAAAAACCACACTTCTCATTGAGAAAAAACGGA
GTAAAGGGTTCGAGCTGTGCATGAATTCAAAAGGGCGAACCAAAAATCAC
CGGACTTCGAGTAACAGACATCGGAAGTTACAGCCATTCAGGTACACATG
AGCCTGCTGCTTCTCCATTTTTTAAAGACTTAAACTGAATAGCTGAATAC
CTACCACGGCGAAAATAAACAAAATCTTCAGCAAAATAAAAGCAAAGCCA
TAACCTTGCAAAAAAAAAAAGAAGAAAAAAACAACTTACTCTCAAGCAAT
TCTGGCCGATTCTTCAAATATATTCAGTACACCCGTTGTTTGATTAGAGC
ACAATTAATTCGCCGTTCCGGAAGGACACCAATTCCTGCTTATTCTGGAT
ACATTTGTTAAGTAAGCAGCAGCGGCAACTACTCAAAATAAAAGAACATT
TAATGAACGGAAACGAAAGTTGGATCAATCACAAACTAGCAGAAAACCTG
AAGCCAATTACTTCCCATCCACCAATAACCAATAGATACCACTGGCCACC
TCTAACAGTAGCAACATTACCCGAACAACAGTAATACCCATTATCAGCAT
TATCTGTGGAGCCGAAAACCTATCAAGATGGCCACCGTAAACGTAAACCG
CAGTGTGACGGACATCTTCTATCGCTACAAGATGCCACGTCTGCAGGCAA
AGGTCGAGGGCAAAGGAAACGGCATTAAGACCGTGCTGGTCAACATGGCG
GAAGTGGCTAGGGCCATCGGACGCCCGGCCACCTATCCAACCAAGTACTT
TGGTTGCGAGCTGGGCGCCCAGACGCTGTTCGATCACAAGAATGAGCGCT
TTGTTGTGAATGGATCGCATGATGTGAACAAGTTGCAGGATTTGTTGGAT
GGTTTTATTCGCAAGTTTGTGTTATGCCCCGAGTGCGACAATCCGGAGAC
CAATTTAACTGTGTCGGCCAAAAACCAGACCATTTCGCAGTCTTGCAAGG
CATGCGGCTTCCATGGTCTGCTCAAGGTTAACCATAAAGTGAACACATTC
ATTGTGAAGAACCCCCCGTCATTGAATCCGGCCGCCCAAGGATCATCGCT
AACCGAGGGCAAACGCTCGAGGAAACAGAAGCAGAAGAACGATAACGCCG
ATGGCTCCATGACCAATAACTCTTTGGCCAACAACTCTGGCGGTGAATCA
GATGGCGGCAACGGCACAAATCAGGCTAGCCAAACTGAGGCCGAGATTAG
CGCAGCTATTCCGGAGAAAACAGCCAAGGATGACGACGATGAGGGATGGA
GTGTCGATGTTTCGAAGGAGGCTATTCGTGCTCGTTTGCAAGATCTGACT
GATGGTGCTAAGGGTATGACTATTTCGGATGACTATGATAAAACTGAAAA
GGAGCGCATTGATATTTTCTACGAGTTGGTTAAGGACAAGCGGGACAAGA
AGCAATTGGATGATGTGCAAACTCACAAGGAGCTGGTGATTGAAGCCGAA
CGCTTGGATATTATTAACAAGGCTCCATTGGTTCTCGCCGAGCTGCTTTT
CACTGAAAACATCATCAAGGACGTGCAGAAGAATCGCCCTTTGCTTCTTC
GCTTCACCCTCAATAATCCAAAAGCACAGCGCTATCTAATTGGTGGAGTG
GAGCAAACTGTAGAGCTGCATAAGGGTATATTGATGAGCAAGGTTGCTGG
AATCTTCAAATTGTTTTATGATCTGGACATACTCGATGAGGCCGTCATAC
TGGAGTGGGCACAGAAGGTTAGCAAACGACATGTCTCGAAAAATATTGCT
GCCGAAATACACGAGAAAGCTATGCCATTCGTTCTCTGGCTGAAGAATGC
CGAGGAAGAGTCCTCCGAAAGTGAGGAGGAGGAGGACGATGAATCCGAGG
AGGATAACTACGTTTCCAGTGCCGGCCAACGTGGCGGTCAACGGGTCGTC
CAACGCGGAATTCCACGCGCTGTTGCAGGCGACGAGGATGACGAGGACGA
CGTGAACATCGACGATATCTAAAAGGAATCAAAAAGAGAACAGCTACCCT
AATCCAACCAGTAATATTTTAAAAGGGGGAAAATCAAGCGAGCAAGCATA
ATCTACAATTCAAACTGAAATATAAATTAGCGAGTTAAATCAAAAAAAAA
AAAAAAAAAAA

GM02147.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
eIF5-RB 2796 eIF5-RB 21..2611 1..2593 12870 99.8 Plus
eIF5-RA 2720 eIF5-RA 94..2535 150..2593 12110 99.8 Plus
eIF5-RC 2862 eIF5-RC 241..2677 155..2593 12100 99.8 Plus
eIF5-RC 2862 eIF5-RC 16..169 1..154 770 100 Plus
eIF5-RA 2720 eIF5-RA 16..98 1..83 415 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15877003..15877828 2591..1766 4130 100 Minus
chrX 22417052 chrX 15878454..15879107 1290..637 3270 100 Minus
chrX 22417052 chrX 15877904..15878383 1768..1289 2400 100 Minus
chrX 22417052 chrX 15880922..15881223 455..153 1465 99.7 Minus
chrX 22417052 chrX 15881661..15881814 154..1 770 100 Minus
chrX 22417052 chrX 15879693..15879791 553..455 495 100 Minus
chrX 22417052 chrX 15879230..15879315 637..552 430 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:14:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15987164..15987991 2593..1766 4140 100 Minus
X 23542271 X 15988617..15989269 1290..637 3220 99.8 Minus
X 23542271 X 15988067..15988546 1768..1289 2400 100 Minus
X 23542271 X 15991083..15991384 455..153 1465 99.7 Minus
X 23542271 X 15991822..15991975 154..1 770 100 Minus
X 23542271 X 15989853..15989951 553..455 495 100 Minus
X 23542271 X 15989392..15989477 637..552 415 98.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15995262..15996089 2593..1766 4140 100 Minus
X 23527363 X 15996715..15997367 1290..637 3230 99.8 Minus
X 23527363 X 15996165..15996644 1768..1289 2400 100 Minus
X 23527363 X 15999181..15999482 455..153 1475 99.6 Minus
X 23527363 X 15999920..16000073 154..1 770 100 Minus
X 23527363 X 15997951..15998049 553..455 495 100 Minus
X 23527363 X 15997490..15997575 637..552 415 98.8 Minus
Blast to na_te.dros performed 2019-03-16 16:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy7 5486 gypsy7 GYPSY7 5486bp 4979..5094 204..322 147 62 Plus

GM02147.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:12:21 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15877003..15877826 1768..2591 100 <- Minus
chrX 15877905..15878381 1291..1767 100 <- Minus
chrX 15878454..15879106 638..1290 100 <- Minus
chrX 15879230..15879314 553..637 100 <- Minus
chrX 15879694..15879790 456..552 100 <- Minus
chrX 15880922..15881221 155..455 99 <- Minus
chrX 15881661..15881814 1..154 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:01:50 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RA 1..1395 1078..2472 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:41:37 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RA 1..1395 1078..2472 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:03:08 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1..1395 1078..2472 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:10:33 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RA 1..1395 1078..2472 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:21:36 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1..1395 1078..2472 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:23:37 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 16..2604 1..2591 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:41:37 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 16..2604 1..2591 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:03:08 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1..2588 2..2591 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:10:33 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 16..2604 1..2591 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:21:36 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
eIF5-RB 1..2588 2..2591 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:21 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
X 15987166..15987989 1768..2591 100 <- Minus
X 15988068..15988544 1291..1767 100 <- Minus
X 15988617..15989268 638..1290 99 <- Minus
X 15989392..15989476 553..637 98 <- Minus
X 15989854..15989950 456..552 100 <- Minus
X 15991083..15991382 155..455 99 <- Minus
X 15991822..15991975 1..154 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:21 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
X 15987166..15987989 1768..2591 100 <- Minus
X 15988068..15988544 1291..1767 100 <- Minus
X 15988617..15989268 638..1290 99 <- Minus
X 15989392..15989476 553..637 98 <- Minus
X 15989854..15989950 456..552 100 <- Minus
X 15991083..15991382 155..455 99 <- Minus
X 15991822..15991975 1..154 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:12:21 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
X 15987166..15987989 1768..2591 100 <- Minus
X 15988068..15988544 1291..1767 100 <- Minus
X 15988617..15989268 638..1290 99 <- Minus
X 15989392..15989476 553..637 98 <- Minus
X 15989854..15989950 456..552 100 <- Minus
X 15991083..15991382 155..455 99 <- Minus
X 15991822..15991975 1..154 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:03:08 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15885855..15886008 1..154 100   Minus
arm_X 15881199..15882022 1768..2591 100 <- Minus
arm_X 15882101..15882577 1291..1767 100 <- Minus
arm_X 15882650..15883301 638..1290 99 <- Minus
arm_X 15883425..15883509 553..637 98 <- Minus
arm_X 15883887..15883983 456..552 100 <- Minus
arm_X 15885116..15885415 155..455 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:46:47 Download gff for GM02147.complete
Subject Subject Range Query Range Percent Splice Strand
X 15999920..16000073 1..154 100   Minus
X 15995264..15996087 1768..2591 100 <- Minus
X 15996166..15996642 1291..1767 100 <- Minus
X 15996715..15997366 638..1290 99 <- Minus
X 15997490..15997574 553..637 98 <- Minus
X 15997952..15998048 456..552 100 <- Minus
X 15999181..15999480 155..455 99 <- Minus

GM02147.pep Sequence

Translation from 1077 to 2471

> GM02147.pep
MATVNVNRSVTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRP
ATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFVLC
PECDNPETNLTVSAKNQTISQSCKACGFHGLLKVNHKVNTFIVKNPPSLN
PAAQGSSLTEGKRSRKQKQKNDNADGSMTNNSLANNSGGESDGGNGTNQA
SQTEAEISAAIPEKTAKDDDDEGWSVDVSKEAIRARLQDLTDGAKGMTIS
DDYDKTEKERIDIFYELVKDKRDKKQLDDVQTHKELVIEAERLDIINKAP
LVLAELLFTENIIKDVQKNRPLLLRFTLNNPKAQRYLIGGVEQTVELHKG
ILMSKVAGIFKLFYDLDILDEAVILEWAQKVSKRHVSKNIAAEIHEKAMP
FVLWLKNAEEESSESEEEEDDESEEDNYVSSAGQRGGQRVVQRGIPRAVA
GDEDDEDDVNIDDI*

GM02147.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20507-PA 455 GF20507-PA 1..455 1..464 1919 81.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19351-PA 464 GG19351-PA 1..464 1..464 2430 98.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:42:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24190-PA 473 GH24190-PA 1..410 1..408 1943 89 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
eIF5-PF 464 CG9177-PF 1..464 1..464 2382 100 Plus
eIF5-PG 464 CG9177-PG 1..464 1..464 2382 100 Plus
eIF5-PB 464 CG9177-PB 1..464 1..464 2382 100 Plus
eIF5-PE 464 CG9177-PE 1..464 1..464 2382 100 Plus
eIF5-PA 464 CG9177-PA 1..464 1..464 2382 100 Plus
eIF5-PC 464 CG9177-PC 1..464 1..464 2382 100 Plus
eIF5-PD 464 CG9177-PD 1..464 1..464 2382 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21522-PA 473 GI21522-PA 1..410 1..408 1986 90.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11549-PA 472 GL11549-PA 1..472 1..464 2034 82 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27482-PA 472 GA27482-PA 1..472 1..464 2031 82 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11673-PA 351 GM11673-PA 1..332 1..332 1737 98.2 Plus
Dsec\GM11674-PA 101 GM11674-PA 3..87 366..451 300 88.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15766-PA 464 GD15766-PA 1..464 1..464 2420 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15997-PA 473 GJ15997-PA 1..410 1..408 1989 90.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25118-PA 471 GK25118-PA 1..471 1..464 1999 82.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\eIF5-PA 463 GE15998-PA 1..463 1..464 2427 98.3 Plus

GM02147.hyp Sequence

Translation from 1077 to 2471

> GM02147.hyp
MATVNVNRSVTDIFYRYKMPRLQAKVEGKGNGIKTVLVNMAEVARAIGRP
ATYPTKYFGCELGAQTLFDHKNERFVVNGSHDVNKLQDLLDGFIRKFVLC
PECDNPETNLTVSAKNQTISQSCKACGFHGLLKVNHKVNTFIVKNPPSLN
PAAQGSSLTEGKRSRKQKQKNDNADGSMTNNSLANNSGGESDGGNGTNQA
SQTEAEISAAIPEKTAKDDDDEGWSVDVSKEAIRARLQDLTDGAKGMTIS
DDYDKTEKERIDIFYELVKDKRDKKQLDDVQTHKELVIEAERLDIINKAP
LVLAELLFTENIIKDVQKNRPLLLRFTLNNPKAQRYLIGGVEQTVELHKG
ILMSKVAGIFKLFYDLDILDEAVILEWAQKVSKRHVSKNIAAEIHEKAMP
FVLWLKNAEEESSESEEEEDDESEEDNYVSSAGQRGGQRVVQRGIPRAVA
GDEDDEDDVNIDDI*

GM02147.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
eIF5-PF 464 CG9177-PF 1..464 1..464 2382 100 Plus
eIF5-PG 464 CG9177-PG 1..464 1..464 2382 100 Plus
eIF5-PB 464 CG9177-PB 1..464 1..464 2382 100 Plus
eIF5-PE 464 CG9177-PE 1..464 1..464 2382 100 Plus
eIF5-PA 464 CG9177-PA 1..464 1..464 2382 100 Plus