Clone GM02310 Report

Search the DGRC for GM02310

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:23
Well:10
Vector:pBS SK-
Associated Gene/TranscriptCG10778-RA
Protein status:GM02310.pep: gold
Preliminary Size:1480
Sequenced Size:1313

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10778 2001-01-01 Release 2 assignment
CG10778 2001-11-09 Blastp of sequenced clone
CG10778 2003-01-01 Sim4 clustering to Release 3
CG10778 2008-04-29 Release 5.5 accounting
CG10778 2008-08-15 Release 5.9 accounting
CG10778 2008-12-18 5.12 accounting

Clone Sequence Records

GM02310.complete Sequence

1313 bp (1313 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069247

> GM02310.complete
AATCACAAGACACCGCAAAAAAATAAATAAATATTTATTTATTTAATTGA
CTGACATCCAATCTTAATCCAGCTGAATTCAAAGACCATGTCGTGGGTCT
CCGACTACAAGTACACATGGACGGAGCGGATAGCGATGCGAACGCTGCGC
GCCTGTGGCTACATTCCGCACCACGTCGCCTTCGTGATGGACGGTAATCG
GAGGTTCGCCCGCTCACAGCAGATTGATAAGATCGAGGGTCATTCGCGGG
GATTCGAGAAGCTTGCGGACTGCCTGCGCTGGTGCCTGGACGTTGGCGTC
CGCGAGGTGACCACCTTTGCCTTCAGCATCGAGAACTTCAAGCGTTCCAA
CGAGGAGGTGGAGGGTCTGTTCAATTTGGCCAGAGAGAAGTTTGCCCGCC
TGCTGGAGGAGACTGCTCGACTGGACGAACATGGCATCCGCATTCGGGTG
ATTGGTAACATCGAGCTACTGCCACACGACTTGCAGAAACTAGTGGCTTC
GGCTATGCTTAGCACGGAGCGCAATGACAAGCTCTTCCTGAACGTCGCCT
TTGCGTACACGTCGCGGGATGAGATTACGCAGGCGGTGGAAACGATACTG
CGGCATGGCAGCCAGGATTTGGCGGGCGAGGACATCAGTGAGCGGTTGCT
GGAAGAATGCCTCTACACGCGACACTCGCCGCCACCGGATCTGGTGTTCC
GCACCTCCGGCGAGACTAGGCTAAGCGACTTCATGATGTGGCAGTTAAGC
ACATCCGTGTTGTACTTCAGCAACGTCCTGTGGCCGCAGATCACTTTCTG
GCATTTCCTGGCCAGCATTCTGGCCTACCAGCGTGATCGCTGGCAGCTGG
ACGACTTTCGGCGAGCGGAGAGGATGCAGAGCTGCCAGCTGGCCAAGGCG
ACTGACTTCTACAGCGAACGCGTCCAGAATTTCCTGACCACCATCGATGA
GGATCGGCGGAAGCTGCTTGTGCGACTGGCCGCCAACTAAGTCCCTTCTG
AAGTCCCGCCTGAAGTCCCTTCGATTTCCACATGATGATGATGTTTGTGA
TATCAGTGGGGAATAAAATCGTGTAAATAGCGTATACCTGTACGTACAGA
TGCTACTGTTTTCCGGCCTATGCAATAAGGCTATCCGCCTTTCAATATAT
GTGCCGTTGGAGATTTCATCACCTAAATGCACTTGTTTAAGACATTCAAT
TAATTTGTAGCCGAATTGTGGGCTTAGCTAGATTGTTTTCACTTTCGGTC
GTAAAAAGTGTTTGCCTTCCATTTGATAAGTAAATTAAAGAATTAAAAAA
AAAAAAAAAAAAA

GM02310.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-RA 1392 CG10778-RA 83..1385 1..1303 6515 100 Plus
CG10778.a 1307 CG10778.a 68..1300 71..1303 6165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:35:30
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7824431..7825174 744..1 3720 100 Minus
chrX 22417052 chrX 7823639..7824191 1294..742 2765 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:14:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7932537..7933280 744..1 3720 100 Minus
X 23542271 X 7931736..7932297 1303..742 2810 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7940635..7941378 744..1 3720 100 Minus
X 23527363 X 7939834..7940395 1303..742 2810 100 Minus
Blast to na_te.dros performed 2019-03-15 12:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
McClintock 6450 McClintock McCLINTOCK 6450bp 4927..4969 1294..1253 113 76.7 Minus

GM02310.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:36:42 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7823639..7824188 745..1294 100 <- Minus
chrX 7824431..7825174 1..744 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:01:59 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..903 88..990 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:20 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..903 88..990 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:46:27 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..903 88..990 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:56 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..903 88..990 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:04:51 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..903 88..990 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:49 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..1294 1..1294 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:20 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..1294 1..1294 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:46:27 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 53..1346 1..1294 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:56 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 1..1294 1..1294 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:04:51 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
CG10778-RA 53..1346 1..1294 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:42 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
X 7931745..7932294 745..1294 100 <- Minus
X 7932537..7933280 1..744 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:42 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
X 7931745..7932294 745..1294 100 <- Minus
X 7932537..7933280 1..744 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:42 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
X 7931745..7932294 745..1294 100 <- Minus
X 7932537..7933280 1..744 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:46:27 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7825778..7826327 745..1294 100 <- Minus
arm_X 7826570..7827313 1..744 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:09 Download gff for GM02310.complete
Subject Subject Range Query Range Percent Splice Strand
X 7939843..7940392 745..1294 100 <- Minus
X 7940635..7941378 1..744 100   Minus

GM02310.hyp Sequence

Translation from 87 to 989

> GM02310.hyp
MSWVSDYKYTWTERIAMRTLRACGYIPHHVAFVMDGNRRFARSQQIDKIE
GHSRGFEKLADCLRWCLDVGVREVTTFAFSIENFKRSNEEVEGLFNLARE
KFARLLEETARLDEHGIRIRVIGNIELLPHDLQKLVASAMLSTERNDKLF
LNVAFAYTSRDEITQAVETILRHGSQDLAGEDISERLLEECLYTRHSPPP
DLVFRTSGETRLSDFMMWQLSTSVLYFSNVLWPQITFWHFLASILAYQRD
RWQLDDFRRAERMQSCQLAKATDFYSERVQNFLTTIDEDRRKLLVRLAAN
*

GM02310.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-PB 300 CG10778-PB 1..300 1..300 1565 100 Plus
CG10778-PA 300 CG10778-PA 1..300 1..300 1565 100 Plus

GM02310.pep Sequence

Translation from 87 to 989

> GM02310.pep
MSWVSDYKYTWTERIAMRTLRACGYIPHHVAFVMDGNRRFARSQQIDKIE
GHSRGFEKLADCLRWCLDVGVREVTTFAFSIENFKRSNEEVEGLFNLARE
KFARLLEETARLDEHGIRIRVIGNIELLPHDLQKLVASAMLSTERNDKLF
LNVAFAYTSRDEITQAVETILRHGSQDLAGEDISERLLEECLYTRHSPPP
DLVFRTSGETRLSDFMMWQLSTSVLYFSNVLWPQITFWHFLASILAYQRD
RWQLDDFRRAERMQSCQLAKATDFYSERVQNFLTTIDEDRRKLLVRLAAN
*

GM02310.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20994-PA 300 GF20994-PA 1..300 1..300 1379 88.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17596-PA 300 GG17596-PA 1..300 1..300 1568 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24772-PA 308 GH24772-PA 1..308 1..300 1240 75 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10778-PB 300 CG10778-PB 1..300 1..300 1565 100 Plus
CG10778-PA 300 CG10778-PA 1..300 1..300 1565 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14820-PA 304 GI14820-PA 1..304 1..300 1206 73.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:44:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15247-PA 303 GL15247-PA 1..300 1..300 1334 80.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10557-PA 303 GA10557-PA 1..300 1..300 1334 80.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11961-PA 300 GM11961-PA 1..300 1..300 1568 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16139-PA 291 GD16139-PA 1..291 1..300 1496 95.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19485-PA 303 GJ19485-PA 1..303 1..300 1266 76.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16221-PA 302 GK16221-PA 1..301 1..300 1278 77.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17496-PA 300 GE17496-PA 1..300 1..300 1541 96.7 Plus