Clone GM02445 Report

Search the DGRC for GM02445

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:24
Well:45
Vector:pBS SK-
Associated Gene/TranscriptCG11679-RA
Protein status:GM02445.pep: gold
Preliminary Size:1562
Sequenced Size:1453

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11679 2001-11-09 Blastp of sequenced clone
CG11679 2003-01-01 Sim4 clustering to Release 3
CG11679 2008-04-29 Release 5.5 accounting
CG11679 2008-08-15 Release 5.9 accounting
CG11679 2008-12-18 5.12 accounting

Clone Sequence Records

GM02445.complete Sequence

1453 bp (1453 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069250

> GM02445.complete
CCACCAGATACGATTCGTTACCAAACCGATCTCAACTCCCAGAAATGGGC
CACTAATTGCTGCTGGAGTATAAATCAAAAGCCATGAACTTTGCACGCCT
GAGATTCGGGCAGATGGTCCTTGGAGGACTTCGAATTCCGCGCCAGCAGA
CGCAGACGCAGTGGATGATGGACCGCCGCCGATGGTTGGCCAGTGAAGCC
ACCTCATCGGCTGCGGCGCCAGCTCAAGCAGCTTCTGTACCTAGAACTCA
AACGCAACCGCGGGTAAAGCCATTGCCGCTAGCCGAGGAGCGCTTGGAGT
CGATACTATCGCCCATTCGCACCAGGATCATTCGAAAGAAGCGCTTGGCC
ATCGATGAACTGTCCGCTTTGGGGTTTCTCAACACCCGTGGTTATACGAC
CGCCGAGGAGTACAATCTGGAGGATCTGCAGATAGCCCTCCGCGAGCAGA
ACCTGTACGAGACGAAGCGTTTCTTCTCCACAGACAATCTGGACGTGGAG
CAGAATGTGCTCTTTGTGGCGGCCAAATATCCGACGGGTCAGCAGCCGCG
GGAGATATTCTTCTTCCGCGAGGGCTCGGTGGTCTTTTGGAACTGCAGCG
ACATCGAGACGAACAATGTGCTAAGTTTCCTGCGCGCCTTCGAAAGGGAA
TCGTATGTGAGTGCCCTGGTTCACGGGGAGAGCGAGGTGATGCCCTACAC
CTACATTCCATCGACGGCGGTGGATGTGGAGGGCGATCTGGTGGCGGAGA
GCAGCGACTTCAATGTCACGTCACGGGCATTCTTCCAGAATGGCAAGTTC
TTTGTTACCGCCGATACGGATAGTTTCCTGTACAAGTACACCTTCTCCAA
TGCGATGGCACAGTCAATAAAGCTGGGCATGTGGGAGGCGACACTGGACC
GCTACATAGACTCCATAGAGCATCTCACCGAGGATCTAAAGCGTGGTCGC
CGATTGAGAATCTCGCGGGCGGCCATGCTGCGAAAAACCGGTGAATTATT
TGCCCTGCGTCATGTGATCAACCTGTCGTCGGATCTGCTGGATGCACCCG
ATTTCTACTGGGACCGCGAGGAACTGGAGGCACTCTACCTGCAGGTGTGC
TCCTACTTCAGCATCTCACGGCGCACCAAGGTGATGAACGAGAAGATCAA
CCACTGCGTGGAACTGGCCGAGCTGGTGTCCCACAATCTGAACGATGCCC
ATCATATCCGGCTCGAGTGGATGATCATAATCCTGATCATGGTAGAGGTG
GGCTTCGAAGTGCTGCACTTCGTCAGCGATCACAGTGATTCGCATAAGCT
AGAGGTCCTGCCACTGGCTGCTCCTGCCGCCTCGATTCCCAATTAGCAAG
TAGGCTTGGTCGATAGTTTTTTGTACTATATTTGTATTTTGCCGAAATAT
AGAATTGTTAGCGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

GM02445.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11679-RA 1421 CG11679-RA 1..1421 1..1421 7030 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 15627330..15628746 1417..1 7070 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:14:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15737489..15738909 1421..1 7030 99.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 15745587..15747007 1421..1 7030 99.6 Minus
X 23527363 X 15745324..15745367 1422..1379 175 93.1 Minus
Blast to na_te.dros performed on 2019-03-16 13:50:49 has no hits.

GM02445.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:51:36 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 15627330..15628746 1..1417 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:02:02 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 1..1263 84..1346 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:22 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 1..1263 84..1346 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:05 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 1..1263 84..1346 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:56:58 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 1..1263 84..1346 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:25:24 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 1..1263 84..1346 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:06:52 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 1..1417 1..1417 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:22 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 1..1417 1..1417 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:05 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 46..1462 1..1417 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:56:59 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 1..1417 1..1417 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:24 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
CG11679-RA 46..1462 1..1417 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:51:36 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
X 15737493..15738909 1..1417 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:51:36 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
X 15737493..15738909 1..1417 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:51:36 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
X 15737493..15738909 1..1417 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:05 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15631526..15632942 1..1417 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:12 Download gff for GM02445.complete
Subject Subject Range Query Range Percent Splice Strand
X 15745591..15747007 1..1417 99   Minus

GM02445.hyp Sequence

Translation from 83 to 1345

> GM02445.hyp
MNFARLRFGQMVLGGLRIPRQQTQTQWMMDRRRWLASEATSSAAAPAQAA
SVPRTQTQPRVKPLPLAEERLESILSPIRTRIIRKKRLAIDELSALGFLN
TRGYTTAEEYNLEDLQIALREQNLYETKRFFSTDNLDVEQNVLFVAAKYP
TGQQPREIFFFREGSVVFWNCSDIETNNVLSFLRAFERESYVSALVHGES
EVMPYTYIPSTAVDVEGDLVAESSDFNVTSRAFFQNGKFFVTADTDSFLY
KYTFSNAMAQSIKLGMWEATLDRYIDSIEHLTEDLKRGRRLRISRAAMLR
KTGELFALRHVINLSSDLLDAPDFYWDREELEALYLQVCSYFSISRRTKV
MNEKINHCVELAELVSHNLNDAHHIRLEWMIIILIMVEVGFEVLHFVSDH
SDSHKLEVLPLAAPAASIPN*

GM02445.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG11679-PA 420 CG11679-PA 1..420 1..420 2146 100 Plus

GM02445.pep Sequence

Translation from 83 to 1345

> GM02445.pep
MNFARLRFGQMVLGGLRIPRQQTQTQWMMDRRRWLASEATSSAAAPAQAA
SVPRTQTQPRVKPLPLAEERLESILSPIRTRIIRKKRLAIDELSALGFLN
TRGYTTAEEYNLEDLQIALREQNLYETKRFFSTDNLDVEQNVLFVAAKYP
TGQQPREIFFFREGSVVFWNCSDIETNNVLSFLRAFERESYVSALVHGES
EVMPYTYIPSTAVDVEGDLVAESSDFNVTSRAFFQNGKFFVTADTDSFLY
KYTFSNAMAQSIKLGMWEATLDRYIDSIEHLTEDLKRGRRLRISRAAMLR
KTGELFALRHVINLSSDLLDAPDFYWDREELEALYLQVCSYFSISRRTKV
MNEKINHCVELAELVSHNLNDAHHIRLEWMIIILIMVEVGFEVLHFVSDH
SDSHKLEVLPLAAPAASIPN*

GM02445.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22230-PA 417 GF22230-PA 1..413 1..415 1889 86.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19377-PA 420 GG19377-PA 1..420 1..420 2180 97.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24244-PA 445 GH24244-PA 34..418 22..396 1587 77.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG11679-PA 420 CG11679-PA 1..420 1..420 2146 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21439-PA 427 GI21439-PA 48..405 37..397 1596 82.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13340-PA 426 GL13340-PA 1..420 1..412 1820 82.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11139-PA 426 GA11139-PA 1..420 1..412 1840 82.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22533-PA 420 GM22533-PA 1..420 1..420 2221 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15781-PA 420 GD15781-PA 1..420 1..420 2225 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16459-PA 435 GJ16459-PA 30..413 22..397 1619 80.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16420-PA 416 GK16420-PA 1..412 1..412 1671 75.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16025-PA 420 GE16025-PA 1..420 1..420 2199 97.9 Plus