Clone GM02605 Report

Search the DGRC for GM02605

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:26
Well:5
Vector:pBS SK-
Associated Gene/TranscriptCG11899-RA
Protein status:GM02605.pep: gold
Preliminary Size:1339
Sequenced Size:1185

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11899 2001-01-01 Release 2 assignment
CG11899 2002-06-07 Blastp of sequenced clone
CG11899 2003-01-01 Sim4 clustering to Release 3
CG11899 2008-04-29 Release 5.5 accounting
CG11899 2008-08-15 Release 5.9 accounting
CG11899 2008-12-18 5.12 accounting

Clone Sequence Records

GM02605.complete Sequence

1185 bp (1185 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119560

> GM02605.complete
GAGAGGTTCATAGATCGCAGACGCACTACATAGTATCAGCATGGTTATCA
ACTTCGCCGCCGGTCCAGCCAAGTTGCCCGAAGAGGTACTGAAAGAGGTG
CAGGAAAATCTTGTCAACTGCAATGGCAGCGGCATCTCGGTCATGGAGAT
GTCCCATCGCTCCAGCAACTATGCCAAGATCCATGATGCGACCATCAGCG
ATCTTCGCGAACTCCTCAATGTGCCCAGTAACTACAAGATTCTGCTGATG
CAGGGCGGTGGCACCGGACAGTTCGCTGCAGTGGCTCTGAACTTGATTGG
CAAGACTGGCACTGCTGATTATGTAATCACCGGCTCCTGGTCGGCCAAGG
CGGCCAAGGAGGCGGCTCAGTACGGCACTGTGAACGCGGTGCTGCCCAAG
TTGGCAAAGTATACAACTGTTCCACGACAGGAGACCTGGAAGCTGGACCC
AAATGCCTCATATGTCTACTACTGCGACAATGAGACCGTAGAGGGCGTGG
AGTTCGACTTTGTGCCCGAGGTTCCAGCCGGTGTGCCACTGGTGGCCGAT
ATGTCCTCCAATTTTCTGTCGCGTCCCTTCGATGTCTCCAAGTTTGGCGT
TATCTATGCGGGAGCCCAGAAGAATATCGGACCAGCGGGCACCACGGTGA
TCATTGTCAGGGACGATTTGATAGGCAAGCACTTGAAGATTACGCCCTCC
ATCCTCAACTTTGAGCAGATGGACAAGAACAACTCCCTGTTAAATACTCC
GCCGACCTTTGGCATCTATGTGATGGGCCTGGTTTTCAAGTGGATCAAGC
GGAACGGAGGAGTCGCTGGTATGGCCAAGCTGGCGGCAGCCAAGTCCAAG
TTGATTTACGACACGATCAACCAGTCGAATGGTTTCTACTACTGCCCAGT
GGATGTCAATGTGCGTTCGCGCATGAATGTGCCCTTCCGTATTGGCAGTG
CCAGTGGAGATGATGCCCTGGAGAAGGAGTTCCTGAGCAAAGCCGAGGCC
GAGGGCATGATTCAGTTGAAGGGTCATCGGTCGGTGGGCGGCATTCGAGC
CTCCCTCTACAATGCTGTAACGCTGGCGGAGACCCAACAGTTGGCCAATC
TGATGCTGGCCTTTTACAAGAACAATAAAAATTAAGCAGGTTCATCTGTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GM02605.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:54:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899.b 1767 CG11899.b 619..1767 1..1149 5715 99.8 Plus
CG11899-RA 1302 CG11899-RA 154..1302 1..1149 5715 99.8 Plus
CG11899.a 1483 CG11899.a 335..1483 1..1149 5715 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25023450..25024128 84..762 3305 99.1 Plus
chr3R 27901430 chr3R 25024184..25024571 762..1149 1865 98.7 Plus
chr3R 27901430 chr3R 25023277..25023363 1..87 435 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:14:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29200649..29201327 84..762 3395 100 Plus
3R 32079331 3R 29201383..29201772 762..1151 1920 99.5 Plus
3R 32079331 3R 29200481..29200567 1..87 435 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28941480..28942158 84..762 3395 100 Plus
3R 31820162 3R 28942214..28942603 762..1151 1920 99.4 Plus
3R 31820162 3R 28941312..28941398 1..87 435 100 Plus
Blast to na_te.dros performed on 2019-03-16 02:53:04 has no hits.

GM02605.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:54:14 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25023277..25023361 1..85 100 -> Plus
chr3R 25023452..25024128 86..762 99 -> Plus
chr3R 25024185..25024571 763..1149 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:02:10 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 1..1095 41..1135 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:51:14 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 1..1095 41..1135 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:23:30 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 1..1095 41..1135 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:33:28 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 1..1095 41..1135 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:23:29 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 1..1095 41..1135 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:02:25 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 30..1178 1..1149 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:51:14 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 30..1178 1..1149 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:30 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 28..1176 1..1149 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:33:28 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 30..1178 1..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:23:29 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
CG11899-RA 28..1176 1..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:14 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29200481..29200565 1..85 100 -> Plus
3R 29200651..29201327 86..762 100 -> Plus
3R 29201384..29201770 763..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:14 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29200481..29200565 1..85 100 -> Plus
3R 29200651..29201327 86..762 100 -> Plus
3R 29201384..29201770 763..1149 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:54:14 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29200481..29200565 1..85 100 -> Plus
3R 29200651..29201327 86..762 100 -> Plus
3R 29201384..29201770 763..1149 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:30 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25026203..25026287 1..85 100 -> Plus
arm_3R 25026373..25027049 86..762 100 -> Plus
arm_3R 25027106..25027492 763..1149 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:14:18 Download gff for GM02605.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28941482..28942158 86..762 100 -> Plus
3R 28942215..28942601 763..1149 99   Plus
3R 28941312..28941396 1..85 100 -> Plus

GM02605.hyp Sequence

Translation from 40 to 1133

> GM02605.hyp
MVINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDA
TISDLRELLNVPSNYKILLMQGGGTGQFAAVALNLIGKTGTADYVITGSW
SAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDPNASYVYYCDNETV
EGVEFDFVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAG
TTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTFGIYVMGLVFK
WIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFR
IGSASGDDALEKEFLSKAEAEGMIQLKGHRSVGGIRASLYNAVTLAETQQ
LANLMLAFYKNNKN*

GM02605.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-PA 364 CG11899-PA 1..364 1..364 1867 100 Plus

GM02605.pep Sequence

Translation from 40 to 1134

> GM02605.pep
MVINFAAGPAKLPEEVLKEVQENLVNCNGSGISVMEMSHRSSNYAKIHDA
TISDLRELLNVPSNYKILLMQGGGTGQFAAVALNLIGKTGTADYVITGSW
SAKAAKEAAQYGTVNAVLPKLAKYTTVPRQETWKLDPNASYVYYCDNETV
EGVEFDFVPEVPAGVPLVADMSSNFLSRPFDVSKFGVIYAGAQKNIGPAG
TTVIIVRDDLIGKHLKITPSILNFEQMDKNNSLLNTPPTFGIYVMGLVFK
WIKRNGGVAGMAKLAAAKSKLIYDTINQSNGFYYCPVDVNVRSRMNVPFR
IGSASGDDALEKEFLSKAEAEGMIQLKGHRSVGGIRASLYNAVTLAETQQ
LANLMLAFYKNNKN*

GM02605.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16606-PA 364 GF16606-PA 1..364 1..364 1775 90.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11653-PA 364 GG11653-PA 1..364 1..364 1902 97.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14302-PA 366 GH14302-PA 1..366 1..364 1662 83.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11899-PA 364 CG11899-PA 1..364 1..364 1867 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10400-PA 362 GI10400-PA 1..362 1..364 1692 85.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13880-PA 364 GL13880-PA 1..363 1..363 1715 86.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11267-PB 364 GA11267-PB 1..363 1..363 1707 86.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12775-PA 364 GM12775-PA 1..364 1..364 1924 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21426-PA 364 GD21426-PA 1..364 1..364 1941 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14513-PA 364 GJ14513-PA 1..364 1..364 1722 87.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22671-PA 364 GK22671-PA 1..364 1..364 1761 89.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23844-PA 364 GE23844-PA 1..364 1..364 1924 98.9 Plus