Clone GM02612 Report

Search the DGRC for GM02612

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:26
Well:12
Vector:pBS SK-
Associated Gene/TranscriptCG7974-RA
Protein status:GM02612.pep: gold
Preliminary Size:1710
Sequenced Size:1137

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7974 2001-01-01 Release 2 assignment
CG7974 2003-01-01 Sim4 clustering to Release 3
CG7974 2003-01-15 Blastp of sequenced clone
CG7974 2008-04-29 Release 5.5 accounting
CG7974 2008-08-15 Release 5.9 accounting
CG7974 2008-12-18 5.12 accounting

Clone Sequence Records

GM02612.complete Sequence

1137 bp (1137 high quality bases) assembled on 2003-01-15

GenBank Submission: AY069253

> GM02612.complete
CGAAACGGGCACACTAATAGCTAAACGTAAACAACAATATTACACTTATT
TTATCTTAAGAAATATATAGATTTATTAGTCTAAAATCATGAGCGATGCA
GAGGAAACAAAAGCAGAAGCCACCACCAAAGTGTTGTTCAAAAAAGCCGG
TCGAAAAAACCTAAGGCAACGCAAGAATTCAGACGAAGAAGAAAAGGAGG
AACAATTAACGCTAGATGAGATTAAAGAACGCCAGCGCCTCAGGCAGCGA
CCCAATGGCGTCAGCCTTGTGGGACTGGCGCTGGGCAAGAAGATCGCGCC
AGAAGAGGAGCTGGCCATCAAGGATCCCTTTAATGTGAAGACCGGTGGTC
TGGTCAACATGAAGCAGCTGAAATCGGGCAAGATGAAGGAGGCGGACGAC
GCCTACGACGTGGGCATTGGCACGCAGTTCTCGGCGGAGACGAATAAGCG
GGATGAGGACGAGGAGATGATGAAGTACATCGAGCAGGAGCTGCAGAAGC
GCAAGGGAGGCGGCACGGAGGACGCAGCAGAGGACGACGGTGATGTAAAC
AAGTACCTGACCCCCGAGGATGCCGCCCTGTACGCCCTGCCCGACCACCT
GAGGCAGTCTTCCTCGCACAGATCGGAGGAGATGTTGTCCAACCAGATGC
TCAATGGCATTCCTGAAGTGGACCTGGGCATTGTGGCCAAGATCCGCAAC
ATAGAGGCCACCGAGGAAGCCAAGCAGAAGCTGCTGCAGGACGCCAAGAA
CAAGAAGGACGGACCCTCGCAATTCGTGCCCACCAACATGGCGGTGAACT
TCATGCAACACAATCGATTCAACATCGAGGACAACAGCGATCAAAGGAGG
CGCAAGCGTGAGGAAAGGGAGGGCAACAAATCCGCACAGCATCAGACGAA
TCCCAATGGAGTCAAGCGAGCCACAGATGACTACCATTATGATAAGTTTA
GGAAGCAGTTCCGCAGATACTAAAGATACGAGTGCCAGCAATAAAATGTA
CAATTGTTTAGGTTCAGGATTCTGTTTTATTTCTATATATATTTCAATTA
AATGTACTTTAAGAATTAACTCATTAATCCATTAATCGGGCCACTTCTGT
AAAATAAAAATAAAAGCAAAAAAAAAAAAAAAAAAAA

GM02612.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-RA 1366 CG7974-RA 44..1147 1..1104 5520 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1664969..1665582 205..818 3070 100 Plus
chr3L 24539361 chr3L 1665638..1665923 819..1104 1415 99.7 Plus
chr3L 24539361 chr3L 1664711..1664914 1..204 1020 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:14:57
Subject Length Description Subject Range Query Range Score Percent Strand
Uhg7-RA 421 CR42453-RA 340..421 1098..1017 410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1665421..1666034 205..818 3070 100 Plus
3L 28110227 3L 1666090..1666375 819..1104 1430 100 Plus
3L 28110227 3L 1665163..1665366 1..204 1020 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1665421..1666034 205..818 3070 100 Plus
3L 28103327 3L 1666090..1666375 819..1104 1430 100 Plus
3L 28103327 3L 1665163..1665366 1..204 1020 100 Plus
Blast to na_te.dros performed on 2019-03-16 14:10:19 has no hits.

GM02612.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:11:22 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1664711..1664914 1..204 100 -> Plus
chr3L 1664969..1665582 205..818 100 -> Plus
chr3L 1665638..1665931 819..1117 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:02:11 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 1..885 89..973 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:04 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 1..885 89..973 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:24:42 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 1..885 89..973 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:47:00 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 1..885 89..973 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:28:22 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 1..885 89..973 100   Plus
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:14:58 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
Uhg7-RA 332..421 1017..1107 96   Minus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:38 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 21..1132 1..1117 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:03 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 21..1132 1..1111 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:42 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 26..1137 1..1111 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:47:00 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 21..1132 1..1117 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:28:22 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
CG7974-RA 26..1137 1..1111 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:22 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1665163..1665366 1..204 100 -> Plus
3L 1665421..1666034 205..818 100 -> Plus
3L 1666090..1666383 819..1117 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:22 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1665163..1665366 1..204 100 -> Plus
3L 1665421..1666034 205..818 100 -> Plus
3L 1666090..1666383 819..1117 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:22 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1665163..1665366 1..204 100 -> Plus
3L 1665421..1666034 205..818 100 -> Plus
3L 1666090..1666383 819..1117 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:42 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1665163..1665366 1..204 100 -> Plus
arm_3L 1665421..1666034 205..818 100 -> Plus
arm_3L 1666090..1666383 819..1117 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:12 Download gff for GM02612.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1665421..1666034 205..818 100 -> Plus
3L 1666090..1666383 819..1117 98   Plus
3L 1665163..1665366 1..204 100 -> Plus

GM02612.hyp Sequence

Translation from 88 to 972

> GM02612.hyp
MSDAEETKAEATTKVLFKKAGRKNLRQRKNSDEEEKEEQLTLDEIKERQR
LRQRPNGVSLVGLALGKKIAPEEELAIKDPFNVKTGGLVNMKQLKSGKMK
EADDAYDVGIGTQFSAETNKRDEDEEMMKYIEQELQKRKGGGTEDAAEDD
GDVNKYLTPEDAALYALPDHLRQSSSHRSEEMLSNQMLNGIPEVDLGIVA
KIRNIEATEEAKQKLLQDAKNKKDGPSQFVPTNMAVNFMQHNRFNIEDNS
DQRRRKREEREGNKSAQHQTNPNGVKRATDDYHYDKFRKQFRRY*

GM02612.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-PB 294 CG7974-PB 1..294 1..294 1507 100 Plus
CG7974-PA 294 CG7974-PA 1..294 1..294 1507 100 Plus

GM02612.pep Sequence

Translation from 88 to 972

> GM02612.pep
MSDAEETKAEATTKVLFKKAGRKNLRQRKNSDEEEKEEQLTLDEIKERQR
LRQRPNGVSLVGLALGKKIAPEEELAIKDPFNVKTGGLVNMKQLKSGKMK
EADDAYDVGIGTQFSAETNKRDEDEEMMKYIEQELQKRKGGGTEDAAEDD
GDVNKYLTPEDAALYALPDHLRQSSSHRSEEMLSNQMLNGIPEVDLGIVA
KIRNIEATEEAKQKLLQDAKNKKDGPSQFVPTNMAVNFMQHNRFNIEDNS
DQRRRKREEREGNKSAQHQTNPNGVKRATDDYHYDKFRKQFRRY*

GM02612.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24824-PA 295 GF24824-PA 1..295 1..294 1378 89.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14814-PA 294 GG14814-PA 1..294 1..294 1443 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:27:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17986-PA 300 GH17986-PA 7..300 4..294 1360 88.1 Plus
Dgri\GH15962-PA 300 GH15962-PA 7..300 4..294 1348 87.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7974-PB 294 CG7974-PB 1..294 1..294 1507 100 Plus
CG7974-PA 294 CG7974-PA 1..294 1..294 1507 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16613-PA 300 GI16613-PA 12..300 9..294 1293 85.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11930-PA 296 GL11930-PA 1..296 1..294 1311 89.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20734-PA 296 GA20734-PA 1..296 1..294 1311 89.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14436-PA 294 GM14436-PA 1..294 1..294 1538 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13638-PA 286 GD13638-PA 1..286 1..294 1471 95.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12867-PA 298 GJ12867-PA 12..298 9..294 1353 88.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17111-PA 296 GK17111-PA 1..296 1..294 1377 88.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21178-PA 294 GE21178-PA 1..294 1..294 1520 97.3 Plus