Clone GM02629 Report

Search the DGRC for GM02629

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:26
Well:29
Vector:pBS SK-
Associated Gene/TranscriptAdy43A-RA
Protein status:GM02629.pep: gold
Preliminary Size:2244
Sequenced Size:2206

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1851 2001-01-01 Release 2 assignment
CG1851 2002-04-30 Blastp of sequenced clone
CG1851 2003-01-01 Sim4 clustering to Release 3
Ady43A 2008-04-29 Release 5.5 accounting
Ady43A 2008-08-15 Release 5.9 accounting
Ady43A 2008-12-18 5.12 accounting

Clone Sequence Records

GM02629.complete Sequence

2206 bp (2206 high quality bases) assembled on 2002-04-30

GenBank Submission: AY102669

> GM02629.complete
CACGCAATATTTATGTAATACGCTAAACAATTAAGTCGCATAAATTATAA
AATAGTCATTAGGGATAACTCGATGGCATTTGTGGAGCGCGACTTTGAGT
CACCATAGTGCCGCCGCCAAGTACGATAGCCACAATCTGAGCGCCAGCGC
AGTGCCAAAAGCTCTGTGTTGTTGAAAAACTCGACAAAGTCAAAAAAGTC
GAAAAAGTCAAGCGAAATGAGAAGTTGTGGCAGACAAACAACAAAGAGCT
GCTCTTTGTAGGCCGCTCGATACAAAGGTAAAAAGAAGTTGGCCCAAACA
AATTGCCCGAAATGGGAAAAAACAAATCGAGCACGCTGGCGAGAGCGAGA
TAAAAACACCGGGACAAACCGGCCCGAGCGTTCAGTTCTGTGCCGGACGA
CAAAAGCGGCGGATCACTGTTGGATTTCATTTCATCCGGAGCACTTGCGA
ATAGAACGCGAAAGTCCCGAGCAAGCGTTAGTTTTTGCATACAATGGAGT
ACCTGAGCTACGTGTACGAAAAAATCTTCGGGGGCAATCCTCCCACGGAT
GACACGCAAGGGGCTTTCCACACGCCCCGCAAGGTCATCTGCTTCGGCAA
CGTCCTGCTCGACCGACTAGTCCAGCTCGAGGATCCCCAACTCCTGGAGC
GGTTCGGCCTGGAACTGGGCTCCAAGGGTGAACTGGACATGGAGAAACTC
AACCAGCTGGCAGCGGAGGCTTCTGAGAGCTCTCGGTGCCTTACAAACCC
GGGTGGCTCTGCCCTCAACACTGCCCGCATCCTGAAGCAGCTGGGCACAG
ACGCGCTCTTCTTTGGCGCCGTGGGAGCCGACAAGCACGCCGAGGAGCTG
CGCCAGATCATTCGGGATCGCGGCATCGAGGCCAGGCTGCAGACCGTCGA
GGATGCGCACACAGGGCAGTGCGTGTGCCTCATGTATCAGGACAACCCCA
CGCTGTACGCCAACATCGGCGCCTCGGCTCAGTTCGAGGTGCAGACCCTG
AGCCACGCCGTCAGCCACGAAGGCCAGAGCTTCCTGCGACCGGTGGAGCG
CAAGCAAATCCTGTACGTGGAGGGCTTCTTTGTGCCCCAGAGGAGTGATG
TGTGCGATTACATAGTGCAGCACCTGGTGCGGGAGCGGCGACGCCTGGCT
CTCAATCTCAGTGCACCCTACATTGTGAGGAAAAATCACCAGGCTATGAT
GAAGCTGGCCCGGGCCGCCTTCTTCCTGTTCGGAAACCGACAGGAGTTCG
AGGCGCTGGCCGAGGCTGCGGGTGGGTTCCGAAACGTCGACGAACTGGCG
GATCATCTCCTGCAATCCGGTGGCACCAAGGTCATCTTCGTCACCAACGG
CAGTGCCGGCGTCCAGGTGATCACCAACTACGTGGAGGAGCTGGCTCCTC
CCGGACCCGTAAGCTTTGAGGACTTCAGGGCGCAGCGCGTAGAGCAGCTG
GTGGATGCCACTGGGGCCGGAGATGCTTTTGTGGCCGGATTCTTGCACGC
CTGGCTGGAGAAGCGCTCGCTGGGCGAGTGCATCCGAATGGCCTCCAGCG
TAGCCGCCAAGGTCGTCACCCAGGTGGGCTGCAATCTGCCCTAGACCGAC
GCCGTGCATCGCCACCTCAGATAGCGCACAACAAAGCACCAAAGTAGACT
CTTAGCTTGTAATTATTCCGTTAATCTCCCCAAACCTTAGGCTTAGTCAA
ACATTTGTCCACCATTTCACCCAAGCAATGAACTTAGTCATAATGTGACT
AAATAAAAATGATTTATACATCGTCCTATGAAAGATAATAATATTACTGA
GTGACTACATTTTATAATATATATAGCGAGATTCCTATTGTATGCAATTT
TTTAACATTTAAATATCTTTTGATAGTTCTATGTAAACAGATGTTGCTTT
CTCAAAAGACAAAACAGATTTATCTAAAACCAGTACATATGTATCTATTT
GTAGCACATTGCCATTAAGAATTTGCGTTGACCTTCAGAAGAGCGCAAAG
ATAAAAAGTGAAATAGGGTAAAATGTGCCCACGTCTAATCAAGCCATGCC
ATGAAATCCAATGCCAGTGGGTTGAATGCTTACAAATTATTAATTTCGCT
ATAATACTTTCTTAGATATACCAATCAATGTGCTGGTAATCATCGTATAA
TAGACTTCATTATTTGAGCAAACATAAGTAAATCAAAAAAAAAAAAAAAA
AAAAAA

GM02629.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ady43A-RA 2220 Ady43A-RA 245..1805 247..1807 7775 99.8 Plus
Ady43A-RA 2220 Ady43A-RA 1809..2066 1801..2058 1290 100 Plus
Ady43A-RA 2220 Ady43A-RA 35..247 1..213 1065 100 Plus
Ady43A-RA 2220 Ady43A-RA 2122..2180 2065..2123 280 98.3 Plus
Ady43A-RA 2220 Ady43A-RA 2189..2220 2154..2185 160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3130569..3131909 2058..728 6490 99.1 Minus
chr2R 21145070 chr2R 3132613..3132940 574..247 1625 99.7 Minus
chr2R 21145070 chr2R 3132938..3133150 213..1 1065 100 Minus
chr2R 21145070 chr2R 3132380..3132535 729..574 780 100 Minus
chr2R 21145070 chr2R 3130406..3130513 2184..2065 340 87.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:14:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7243177..7244517 2058..728 6490 99.1 Minus
2R 25286936 2R 7245221..7245548 574..247 1640 100 Minus
2R 25286936 2R 7245546..7245758 213..1 1065 100 Minus
2R 25286936 2R 7244988..7245143 729..574 780 100 Minus
2R 25286936 2R 7243063..7243121 2123..2065 280 98.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7244637..7245716 1807..728 5370 99.8 Minus
2R 25260384 2R 7246420..7246747 574..247 1640 100 Minus
2R 25260384 2R 7244376..7244633 2058..1801 1290 100 Minus
2R 25260384 2R 7246745..7246957 213..1 1065 100 Minus
2R 25260384 2R 7246187..7246342 729..574 780 100 Minus
2R 25260384 2R 7244262..7244320 2123..2065 280 98.3 Minus
2R 25260384 2R 7244222..7244253 2185..2154 160 100 Minus
Blast to na_te.dros performed on 2019-03-16 14:46:37 has no hits.

GM02629.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:47:24 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3130565..3131907 730..2067 98 <- Minus
chr2R 3132380..3132535 574..729 100 <- Minus
chr2R 3132614..3132940 247..573 99 == Minus
chr2R 3132941..3133150 1..210 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:02:12 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 1..1101 494..1594 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:53:55 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 1..1101 494..1594 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:54:12 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 1..1101 494..1594 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:46:25 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 1..1101 494..1594 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:32:25 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 1..1101 494..1594 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:32:29 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 1..210 1..210 100 == Plus
Ady43A-RA 211..2034 247..2065 99 <- Plus
Ady43A-RA 2089..2146 2066..2123 98 == Plus
Ady43A-RA 2155..2185 2154..2184 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:53:54 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 1..210 1..210 100 == Plus
Ady43A-RA 211..2034 247..2065 99 <- Plus
Ady43A-RA 2089..2146 2066..2123 98 == Plus
Ady43A-RA 2155..2185 2154..2184 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:54:12 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 19..228 1..210 100 == Plus
Ady43A-RA 229..2052 247..2065 99 <- Plus
Ady43A-RA 2107..2164 2066..2123 98 == Plus
Ady43A-RA 2173..2203 2154..2184 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:46:25 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 1..210 1..210 100 == Plus
Ady43A-RA 211..2034 247..2065 99 <- Plus
Ady43A-RA 2089..2149 2066..2127 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:32:25 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
Ady43A-RA 19..228 1..210 100 == Plus
Ady43A-RA 229..2052 247..2065 99 <- Plus
Ady43A-RA 2107..2164 2066..2123 98 == Plus
Ady43A-RA 2173..2203 2154..2184 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:47:24 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7244988..7245143 574..729 100 <- Minus
2R 7243024..7243054 2154..2184 100 == Minus
2R 7243063..7243118 2068..2123 98 <- Minus
2R 7243173..7244515 730..2067 98 <- Minus
2R 7245222..7245548 247..573 100 == Minus
2R 7245549..7245758 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:47:24 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7244988..7245143 574..729 100 <- Minus
2R 7243024..7243054 2154..2184 100 == Minus
2R 7243063..7243118 2068..2123 98 <- Minus
2R 7243173..7244515 730..2067 98 <- Minus
2R 7245222..7245548 247..573 100 == Minus
2R 7245549..7245758 1..210 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:47:24 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7244988..7245143 574..729 100 <- Minus
2R 7243024..7243054 2154..2184 100 == Minus
2R 7243063..7243118 2068..2123 98 <- Minus
2R 7243173..7244515 730..2067 98 <- Minus
2R 7245222..7245548 247..573 100 == Minus
2R 7245549..7245758 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:54:12 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3130529..3130559 2154..2184 100 == Minus
arm_2R 3130568..3130623 2068..2123 98 <- Minus
arm_2R 3130678..3132020 730..2067 98 <- Minus
arm_2R 3132493..3132648 574..729 100 <- Minus
arm_2R 3132727..3133053 247..573 100 == Minus
arm_2R 3133054..3133263 1..210 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:18:59 Download gff for GM02629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7244372..7245714 730..2067 98 <- Minus
2R 7246187..7246342 574..729 100 <- Minus
2R 7246421..7246747 247..573 100 == Minus
2R 7246748..7246957 1..210 100   Minus
2R 7244223..7244253 2154..2184 100 == Minus
2R 7244262..7244317 2068..2123 98 <- Minus

GM02629.hyp Sequence

Translation from 457 to 1557

> GM02629.hyp
MEYLSYVYEKIFGGNPPTDDTQGAFHTPRKVICFGNVLLDRLVQLEDPQL
LERFGLELGSKGELDMEKLNQLAAEASESSRCLTNPGGSALNTARILKQL
GTDALFFGAVGADKHAEELRQIIRDRGIEARLQTVEDAHTGQCVCLMYQD
NPTLYANIGASAQFEVQTLSHAVSHEGQSFLRPVERKQILYVEGFFVPQR
SDVCDYIVQHLVRERRRLALNLSAPYIVRKNHQAMMKLARAAFFLFGNRQ
EFEALAEAAGGFRNVDELADHLLQSGGTKVIFVTNGSAGVQVITNYVEEL
APPGPVSFEDFRAQRVEQLVDATGAGDAFVAGFLHAWLEKRSLGECIRMA
SSVAAKVVTQVGCNLP*

GM02629.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
Ady43A-PA 366 CG1851-PA 1..366 1..366 1877 100 Plus
CG3809-PA 396 CG3809-PA 60..385 34..365 272 25 Plus
AdenoK-PC 345 CG11255-PC 64..335 87..363 267 28 Plus
AdenoK-PB 345 CG11255-PB 64..335 87..363 267 28 Plus
AdenoK-PA 345 CG11255-PA 64..335 87..363 267 28 Plus

GM02629.pep Sequence

Translation from 493 to 1593

> GM02629.pep
MEYLSYVYEKIFGGNPPTDDTQGAFHTPRKVICFGNVLLDRLVQLEDPQL
LERFGLELGSKGELDMEKLNQLAAEASESSRCLTNPGGSALNTARILKQL
GTDALFFGAVGADKHAEELRQIIRDRGIEARLQTVEDAHTGQCVCLMYQD
NPTLYANIGASAQFEVQTLSHAVSHEGQSFLRPVERKQILYVEGFFVPQR
SDVCDYIVQHLVRERRRLALNLSAPYIVRKNHQAMMKLARAAFFLFGNRQ
EFEALAEAAGGFRNVDELADHLLQSGGTKVIFVTNGSAGVQVITNYVEEL
APPGPVSFEDFRAQRVEQLVDATGAGDAFVAGFLHAWLEKRSLGECIRMA
SSVAAKVVTQVGCNLP*

GM02629.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12238-PA 365 GF12238-PA 1..365 1..366 1652 84.2 Plus
Dana\GF17233-PA 347 GF17233-PA 8..333 31..362 288 27.9 Plus
Dana\GF25174-PA 339 GF25174-PA 58..330 87..364 273 29.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10762-PA 366 GG10762-PA 1..366 1..366 1875 95.4 Plus
Dere\GG18640-PA 397 GG18640-PA 61..386 34..365 275 25.3 Plus
Dere\GG13787-PA 345 GG13787-PA 64..336 87..364 239 28.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20370-PA 364 GH20370-PA 1..364 1..366 1282 65.6 Plus
Dgri\GH22195-PA 341 GH22195-PA 1..341 1..366 1178 62.3 Plus
Dgri\GH23323-PA 348 GH23323-PA 14..338 35..364 304 28.9 Plus
Dgri\GH15477-PA 347 GH15477-PA 8..333 31..362 274 28.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
Ady43A-PA 366 CG1851-PA 1..366 1..366 1877 100 Plus
CG3809-PA 396 CG3809-PA 60..385 34..365 272 25 Plus
AdenoK-PC 345 CG11255-PC 64..335 87..363 267 28 Plus
AdenoK-PB 345 CG11255-PB 64..335 87..363 267 28 Plus
AdenoK-PA 345 CG11255-PA 64..335 87..363 267 28 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20045-PA 365 GI20045-PA 1..365 1..366 1405 70.2 Plus
Dmoj\GI13634-PA 346 GI13634-PA 14..337 35..364 298 28.3 Plus
Dmoj\GI10274-PA 411 GI10274-PA 53..400 7..365 237 26.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10944-PA 368 GL10944-PA 1..366 1..366 1544 77.9 Plus
Dper\GL24870-PA 345 GL24870-PA 64..336 87..364 275 28.7 Plus
Dper\GL22267-PA 347 GL22267-PA 11..336 34..365 268 27.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14968-PA 368 GA14968-PA 1..366 1..366 1542 77.9 Plus
Dpse\GA23538-PA 340 GA23538-PA 59..331 87..364 276 28.7 Plus
Dpse\GA17700-PA 347 GA17700-PA 11..336 34..365 261 26.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20810-PA 366 GM20810-PA 1..366 1..366 1914 97.8 Plus
Dsec\GM24000-PA 396 GM24000-PA 32..382 23..362 277 25.2 Plus
Dsec\GM24613-PA 345 GM24613-PA 64..336 87..364 263 28.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10267-PA 343 GD10267-PA 1..343 1..366 1759 91.8 Plus
Dsim\GD18802-PA 347 GD18802-PA 11..333 34..362 275 25.5 Plus
Dsim\GD12680-PA 345 GD12680-PA 64..336 87..364 236 28.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21287-PA 367 GJ21287-PA 1..367 1..366 1376 69.8 Plus
Dvir\GJ13971-PA 346 GJ13971-PA 14..337 35..364 312 29.7 Plus
Dvir\GJ11082-PA 347 GJ11082-PA 8..336 31..365 271 27.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21524-PA 367 GK21524-PA 1..365 1..366 1436 70.2 Plus
Dwil\GK11532-PA 354 GK11532-PA 8..319 31..348 311 29.7 Plus
Dwil\GK17347-PA 345 GK17347-PA 64..335 87..363 257 27.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24147-PA 366 GE24147-PA 1..366 1..366 1913 97.8 Plus
Dyak\GE26161-PA 347 GE26161-PA 11..333 34..362 276 25.8 Plus
Dyak\GE20080-PA 345 GE20080-PA 64..336 87..364 235 27.3 Plus