BDGP Sequence Production Resources |
Search the DGRC for GM02880
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 28 |
Well: | 80 |
Vector: | pBS SK- |
Associated Gene/Transcript | Pdp1-RB |
Protein status: | GM02880.pep: gold |
Sequenced Size: | 1681 |
Gene | Date | Evidence |
---|---|---|
CG17888 | 2002-12-10 | Blastp of sequenced clone |
CG17888 | 2003-01-01 | Sim4 clustering to Release 3 |
Pdp1 | 2008-04-29 | Release 5.5 accounting |
Pdp1 | 2008-08-15 | Release 5.9 accounting |
Pdp1 | 2008-12-18 | 5.12 accounting |
1681 bp (1681 high quality bases) assembled on 2002-12-10
GenBank Submission: BT003290
> GM02880.complete CAGCAATCTGCAGGCCAGCAAAAAACCCGCAACGAGACATTTTTTGTTCG TGTATAATCACAAAATTTCGGAAATTTTTATGAAAAAATGAGCGACAGGG AGCGATCGTCCCCAACACTGATCGAAACTGGTTTAAAAAACTTAATTGGC GGCCGTGATGGTAATTACCCACTGATCAGCGGCATTAATGGCAAATCCAC ATCGAATAGCAAAGAGATCATCTGCCCAGATGACAAATACAAGGAGGAGG GCGACATCTGGAATGTTGAGGCGCAAACAGCGTTTCTCGGCCCAAATCTG TGGGACAAGACCCTGCCCTATGATGCCGACCTCAAGGTAACACAATATGC CGACCTAGACGAATTCCTGTCGGAGAACAACATACCTGATGGCCTGCCCG GCACGCATCTGGGCCACTCCAGTGGCCTGGGCCACCGGTCCGATTCCCTG GGTCACGCAGCGGGTCTGTCTCTTGGTCTTGGCCACATAACCACAAAGCG AGAGCGGTCGCCCTCGCCATCCGACTGCATCAGTCCGGACACGCTAAATC CGCCATCGCCGGCCGAGTCAACATTTTCGTTCGCCTCCTCGGGCCGTGAC TTTGATCCGCGAACCAGAGCCTTCTCCGACGAGGAGCTCAAGCCGCAGCC GATGATCAAAAAGTCACGCAAGCAATTCGTTCCAGATGAGCTCAAGGACG ACAAGTACTGGGCACGTCGCCGGAAGAACAACATTGCCGCCAAGCGATCC CGCGATGCCCGGCGCCAGAAGGAGAACCAGATTGCGATGCGGGCACGCTA CTTGGAGAAGGAAAATGCAACATTACATCAGGAGGTGGAGCAGTTGAAAC AGGAGAACATGGACTTGCGTGCACGTCTATCGAAATTCCAAGATGTGTAA TGATAAATACAATTTTGTGACTTGGCCTGAGGACACCACAACAATTAAAT AATAATAACTATTGATAAAATAACAATAATCATAACTATGATAAAACTAC TAATAATGTTTAGTACATCAGACATGAAACCTACACTATAAAGTACATAT TGTATCTAAATATGTATATGCAAAAGTATAATTAGTAAGCAAACACACAC CCACACAAACACAAGAAACCCCTCACGGCGTCGTGCTCCGCTTTAATATT TATTTTATGCTAAAAACTAAAAGCAAATTAACTAAACACCGAGGAGGAGA AACCGACCGAATGGAAACTAAAAACATTTTTTAGAGTAGCCAAAAAAAAA GAAAGTCTCACGAGAGCAGAGCGTTGAAAAGCTCTGCAGCCGAAGCTTTT TGCCTTTAAAGTAGCATACTTCCGAGCGCAATGGGAATCCTAAAAAAAAA ACACAGACGTAGAATTGTTATCTTTTAAATTGTTTAATAGTTGTCTAGCC TAGTTTTACGCAAAAAAAAAAACACTTCTCTTCTTCGACTTCTTTTGCTA TTGTTTTCACCCTTCTACTTTAGTTTTTATTATTCTTTGTAATTAGCTGT TTGATTAAGTTTTTCTTTAGCTTATAGTGAACGGAAATCCACATGCACAC AACAAATCATATTGTAAATAATTTCGTTGCCTTTTTTCAAATTAACTCGA GAGAGGAATTACCATAAAATGCAAAAGAAAACATGTATAAAAAATTGCAA AATGAAAACCCACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pdp1.j | 4499 | Pdp1.j | 1349..2839 | 190..1680 | 7395 | 99.7 | Plus |
Pdp1.q | 4987 | Pdp1.q | 1349..2839 | 190..1680 | 7395 | 99.7 | Plus |
Pdp1-RG | 4048 | Pdp1-RG | 1349..2839 | 190..1680 | 7395 | 99.7 | Plus |
Pdp1.j | 4499 | Pdp1.j | 1118..1310 | 1..193 | 965 | 100 | Plus |
Pdp1.q | 4987 | Pdp1.q | 1118..1310 | 1..193 | 965 | 100 | Plus |
Pdp1-RG | 4048 | Pdp1-RG | 1118..1310 | 1..193 | 965 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 7807652..7808496 | 1663..814 | 4060 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 7808568..7808809 | 813..572 | 1210 | 100 | Minus |
chr3L | 24539361 | chr3L | 7809515..7809740 | 571..346 | 1100 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 7845274..7845464 | 191..1 | 955 | 100 | Minus |
chr3L | 24539361 | chr3L | 7810145..7810300 | 345..190 | 780 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 7815546..7816412 | 1680..814 | 4275 | 99.5 | Minus |
3L | 28110227 | 3L | 7816484..7816725 | 813..572 | 1210 | 100 | Minus |
3L | 28110227 | 3L | 7817437..7817662 | 571..346 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 7853182..7853372 | 191..1 | 955 | 100 | Minus |
3L | 28110227 | 3L | 7818069..7818224 | 345..190 | 780 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 7808646..7809512 | 1680..814 | 4275 | 99.5 | Minus |
3L | 28103327 | 3L | 7809584..7809825 | 813..572 | 1210 | 100 | Minus |
3L | 28103327 | 3L | 7810537..7810762 | 571..346 | 1130 | 100 | Minus |
3L | 28103327 | 3L | 7846282..7846472 | 191..1 | 955 | 100 | Minus |
3L | 28103327 | 3L | 7811169..7811324 | 345..190 | 780 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\INE-1 | 1467 | Dbuz\INE-1 ISBU1 1467bp | 135..198 | 1506..1443 | 140 | 68.8 | Minus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 1514..1618 | 1247..1145 | 134 | 63 | Minus |
Juan | 4236 | Juan JUAN 4236bp | 4066..4111 | 1144..1188 | 128 | 78.3 | Plus |
S-element | 1736 | S-element DM33463 1736bp Derived from U33463 (g1006788) (Rel. 47, Last updated, Version 5). | 119..223 | 1145..1247 | 125 | 62 | Plus |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 1102..1156 | 1051..1111 | 119 | 73.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7807652..7808302 | 1008..1663 | 98 | == | Minus |
chr3L | 7808363..7808496 | 814..947 | 100 | <- | Minus |
chr3L | 7808568..7808809 | 572..813 | 100 | <- | Minus |
chr3L | 7809515..7809740 | 346..571 | 99 | <- | Minus |
chr3L | 7810145..7810299 | 191..345 | 100 | <- | Minus |
chr3L | 7845275..7845464 | 1..190 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 1..813 | 88..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 1..813 | 88..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 1..813 | 88..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 1..813 | 88..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 1..813 | 88..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 1086..2748 | 1..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 1090..2752 | 1..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 2177..3839 | 1..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 1086..2748 | 1..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pdp1-RB | 2177..3839 | 1..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7818069..7818223 | 191..345 | 100 | <- | Minus |
3L | 7853183..7853372 | 1..190 | 100 | Minus | |
3L | 7815563..7816412 | 814..1663 | 99 | <- | Minus |
3L | 7816484..7816725 | 572..813 | 100 | <- | Minus |
3L | 7817437..7817662 | 346..571 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7818069..7818223 | 191..345 | 100 | <- | Minus |
3L | 7853183..7853372 | 1..190 | 100 | Minus | |
3L | 7815563..7816412 | 814..1663 | 99 | <- | Minus |
3L | 7816484..7816725 | 572..813 | 100 | <- | Minus |
3L | 7817437..7817662 | 346..571 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7818069..7818223 | 191..345 | 100 | <- | Minus |
3L | 7853183..7853372 | 1..190 | 100 | Minus | |
3L | 7815563..7816412 | 814..1663 | 99 | <- | Minus |
3L | 7816484..7816725 | 572..813 | 100 | <- | Minus |
3L | 7817437..7817662 | 346..571 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7811169..7811323 | 191..345 | 100 | <- | Minus |
arm_3L | 7808663..7809512 | 814..1663 | 99 | <- | Minus |
arm_3L | 7809584..7809825 | 572..813 | 100 | <- | Minus |
arm_3L | 7810537..7810762 | 346..571 | 100 | <- | Minus |
arm_3L | 7846283..7846472 | 1..190 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7811169..7811323 | 191..345 | 100 | <- | Minus |
3L | 7846283..7846472 | 1..190 | 100 | Minus | |
3L | 7808663..7809512 | 814..1663 | 99 | <- | Minus |
3L | 7809584..7809825 | 572..813 | 100 | <- | Minus |
3L | 7810537..7810762 | 346..571 | 100 | <- | Minus |
Translation from 87 to 899
> GM02880.hyp MSDRERSSPTLIETGLKNLIGGRDGNYPLISGINGKSTSNSKEIICPDDK YKEEGDIWNVEAQTAFLGPNLWDKTLPYDADLKVTQYADLDEFLSENNIP DGLPGTHLGHSSGLGHRSDSLGHAAGLSLGLGHITTKRERSPSPSDCISP DTLNPPSPAESTFSFASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPD ELKDDKYWARRRKNNIAAKRSRDARRQKENQIAMRARYLEKENATLHQEV EQLKQENMDLRARLSKFQDV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pdp1-PK | 270 | CG17888-PK | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PP | 270 | CG17888-PP | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PB | 270 | CG17888-PB | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PM | 275 | CG17888-PM | 1..275 | 1..270 | 1396 | 97.8 | Plus |
Pdp1-PG | 284 | CG17888-PG | 1..284 | 1..270 | 1392 | 95.1 | Plus |
Translation from 87 to 899
> GM02880.pep MSDRERSSPTLIETGLKNLIGGRDGNYPLISGINGKSTSNSKEIICPDDK YKEEGDIWNVEAQTAFLGPNLWDKTLPYDADLKVTQYADLDEFLSENNIP DGLPGTHLGHSSGLGHRSDSLGHAAGLSLGLGHITTKRERSPSPSDCISP DTLNPPSPAESTFSFASSGRDFDPRTRAFSDEELKPQPMIKKSRKQFVPD ELKDDKYWARRRKNNIAAKRSRDARRQKENQIAMRARYLEKENATLHQEV EQLKQENMDLRARLSKFQDV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24150-PA | 639 | GF24150-PA | 397..639 | 29..270 | 1306 | 97.5 | Plus |
Dana\GF12658-PA | 197 | GF12658-PA | 110..182 | 192..264 | 163 | 46.6 | Plus |
Dana\GF21952-PA | 456 | GF21952-PA | 390..454 | 201..265 | 158 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14935-PA | 598 | GG14935-PA | 345..598 | 18..270 | 1275 | 94.9 | Plus |
Dere\GG12614-PA | 444 | GG12614-PA | 377..432 | 201..256 | 157 | 53.6 | Plus |
Dere\GG22289-PA | 192 | GG22289-PA | 105..177 | 192..264 | 155 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23565-PA | 573 | GH23565-PA | 466..573 | 163..270 | 603 | 100 | Plus |
Dgri\GH17268-PA | 53 | GH17268-PA | 1..36 | 1..36 | 185 | 100 | Plus |
Dgri\GH17582-PA | 457 | GH17582-PA | 392..456 | 201..265 | 159 | 47.7 | Plus |
Dgri\GH21058-PA | 187 | GH21058-PA | 101..173 | 192..264 | 158 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pdp1-PK | 270 | CG17888-PK | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PP | 270 | CG17888-PP | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PB | 270 | CG17888-PB | 1..270 | 1..270 | 1417 | 100 | Plus |
Pdp1-PM | 275 | CG17888-PM | 1..275 | 1..270 | 1396 | 97.8 | Plus |
Pdp1-PG | 284 | CG17888-PG | 1..284 | 1..270 | 1392 | 95.1 | Plus |
Pdp1-PN | 281 | CG17888-PN | 1..281 | 1..270 | 1364 | 94 | Plus |
Pdp1-PC | 570 | CG17888-PC | 333..570 | 33..270 | 1251 | 99.6 | Plus |
Pdp1-PO | 264 | CG17888-PO | 28..264 | 34..270 | 1249 | 100 | Plus |
Pdp1-PD | 647 | CG17888-PD | 411..647 | 34..270 | 1249 | 100 | Plus |
Pdp1-PF | 250 | CG17888-PF | 13..250 | 33..270 | 1246 | 99.2 | Plus |
Pdp1-PJ | 633 | CG17888-PJ | 397..633 | 34..270 | 1244 | 99.6 | Plus |
Pdp1-PL | 581 | CG17888-PL | 331..581 | 18..270 | 1224 | 93.7 | Plus |
Pdp1-PI | 232 | CG17888-PI | 1..232 | 1..270 | 1166 | 85.6 | Plus |
CG7786-PA | 192 | CG7786-PA | 105..177 | 192..264 | 162 | 46.6 | Plus |
gt-PB | 448 | CG7952-PB | 381..434 | 201..254 | 153 | 55.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12193-PA | 585 | GI12193-PA | 332..585 | 18..270 | 1265 | 93.7 | Plus |
Dmoj\GI18660-PA | 249 | GI18660-PA | 163..235 | 192..264 | 159 | 46.6 | Plus |
Dmoj\GI15181-PA | 507 | GI15181-PA | 442..506 | 201..265 | 159 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17823-PA | 284 | GL17823-PA | 1..284 | 1..270 | 1406 | 94.7 | Plus |
Dper\GL20006-PA | 110 | GL20006-PA | 5..58 | 35..88 | 292 | 96.3 | Plus |
Dper\GL14307-PA | 495 | GL14307-PA | 429..493 | 201..265 | 161 | 47.7 | Plus |
Dper\GL11555-PA | 217 | GL11555-PA | 130..202 | 192..264 | 160 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28498-PA | 592 | GA28498-PA | 339..592 | 18..270 | 1274 | 94.5 | Plus |
Dpse\GA20715-PA | 493 | GA20715-PA | 427..491 | 201..265 | 161 | 47.7 | Plus |
Dpse\GA20586-PA | 219 | GA20586-PA | 132..204 | 192..264 | 160 | 46.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24985-PA | 581 | GM24985-PA | 328..581 | 18..270 | 1272 | 94.9 | Plus |
Dsec\GM18880-PA | 445 | GM18880-PA | 378..433 | 201..256 | 158 | 53.6 | Plus |
Dsec\GM20077-PA | 192 | GM20077-PA | 105..177 | 192..264 | 152 | 43.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13032-PA | 647 | GD13032-PA | 406..647 | 29..270 | 1309 | 98.3 | Plus |
Dsim\GD15226-PA | 192 | GD15226-PA | 105..177 | 192..264 | 155 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11425-PA | 706 | GJ11425-PA | 465..706 | 29..270 | 1315 | 96.7 | Plus |
Dvir\GJ21676-PA | 192 | GJ21676-PA | 106..178 | 192..264 | 162 | 46.6 | Plus |
Dvir\GJ17061-PA | 491 | GJ17061-PA | 426..490 | 201..265 | 160 | 47.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10510-PA | 610 | GK10510-PA | 352..610 | 18..270 | 1172 | 90.3 | Plus |
Dwil\GK20980-PA | 196 | GK20980-PA | 109..181 | 192..264 | 164 | 45.2 | Plus |
Dwil\GK17868-PA | 445 | GK17868-PA | 378..433 | 201..256 | 157 | 53.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20386-PA | 586 | GE20386-PA | 333..586 | 18..270 | 1273 | 94.9 | Plus |
Dyak\GE16945-PA | 448 | GE16945-PA | 381..436 | 201..256 | 158 | 53.6 | Plus |
Dyak\GE14085-PA | 192 | GE14085-PA | 105..177 | 192..264 | 155 | 45.2 | Plus |