Clone GM02985 Report

Search the DGRC for GM02985

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:29
Well:85
Vector:pBS SK-
Associated Gene/TranscriptCG10265-RA
Protein status:GM02985.pep: gold
Preliminary Size:1371
Sequenced Size:1220

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10265 2001-01-01 Release 2 assignment
CG10265 2001-10-10 Blastp of sequenced clone
CG10265 2003-01-01 Sim4 clustering to Release 3
CG10265 2008-04-29 Release 5.5 accounting
CG10265 2008-08-15 Release 5.9 accounting
CG10265 2008-12-18 5.12 accounting

Clone Sequence Records

GM02985.complete Sequence

1220 bp (1220 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060850

> GM02985.complete
CTGAAATAATTTTTTAATACCATTTTTCTTCTTGGCGCGAATTGGCTACA
AAAAAAATGAATGGATCGCGTAAAATAAAGTCCATGAAGACGATTCGCCT
TGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACGCTGTGCCGCA
GCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACGCCACCTAGCC
GATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAACCGCTGGCATT
TGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGACAGGAGATTC
ACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACACGGCCATCGAT
TGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATCCCAAGCCCAC
CGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATAGTAAAGGAGG
ATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGGGGTGCCTGCG
AAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTCTGACCTCCCA
GCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAACCGCCAGCAG
TAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCTGGAAGATCTG
AAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAGAGGCACCACC
AGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCTACCGGGACAA
CGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCCTGCATCGAAG
CTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAGAACCTCCCAA
GACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCAACTCCTCCAT
TGGATGGCACCCAGAAAATCCTAAACAAACTCAGAGCATGCGGTGTGGAG
GTGAAGCGAGCAAGTACCCAATTGAATGCCACGACTGAGCTAAATCCAAC
CAAAAATCAAGAGACCTTGGACATCATGAGAAAACTGCAATCCAAGGGCA
TCAGATGCACCAAAGTAAGAAAATCGTAGTTGTATTCGCCGTAGTGTAAG
GATGGTGCCATTAAATGTGCCTCTGGAGGCGAGGATTTAGCAATATAACT
TTATTTAATTTAAATGGAGATTAATAAATTCCCGGATAGCGTTTATAACT
TTAAAAAAAAAAAAAAAAAA

GM02985.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-RA 1512 CG10265-RA 120..1323 1..1204 6020 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10879792..10880699 1202..295 4540 100 Minus
chr2R 21145070 chr2R 10880781..10881076 296..1 1480 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:15:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14992521..14993430 1204..295 4550 100 Minus
2R 25286936 2R 14993512..14993807 296..1 1480 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14993720..14994629 1204..295 4550 100 Minus
2R 25260384 2R 14994711..14995006 296..1 1480 100 Minus
Blast to na_te.dros performed 2019-03-16 04:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
G6 2042 G6 G6_DM 2042bp 622..674 846..895 114 71.7 Plus

GM02985.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:10:33 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10879792..10880697 297..1202 100 <- Minus
chr2R 10880781..10881076 1..296 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:02:26 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 1..1023 57..1079 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:49:00 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 1..1023 57..1079 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:09 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 1..1023 57..1079 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:17:48 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 1..1023 57..1079 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:28 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 1..1023 57..1079 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:33:08 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 688..1889 1..1202 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:49:00 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 25..1226 1..1202 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:09 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 29..1230 1..1202 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:17:48 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RB 688..1889 1..1202 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:28 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
CG10265-RA 29..1230 1..1202 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:33 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14992523..14993428 297..1202 100 <- Minus
2R 14993512..14993807 1..296 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:33 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14992523..14993428 297..1202 100 <- Minus
2R 14993512..14993807 1..296 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:10:33 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14992523..14993428 297..1202 100 <- Minus
2R 14993512..14993807 1..296 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:09 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10881017..10881312 1..296 100   Minus
arm_2R 10880028..10880933 297..1202 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:54:42 Download gff for GM02985.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14994711..14995006 1..296 100   Minus
2R 14993722..14994627 297..1202 100 <- Minus

GM02985.pep Sequence

Translation from 56 to 1078

> GM02985.pep
MNGSRKIKSMKTIRLGDVLYDDQKRLLTLCRSCECHFMTLQSFQRHLADC
PGVKYIVTPIEPLAFDDANRETRLVNGRQEIHIYDLEAVKKNTNTAIDWE
AELEDPRWYTNPKPTVQTIPKTNSKENIVKEDVVPLAKEPQEPEGVPAKR
PRSPPTTRRTILTSQQQRRSRACLTSPQPPAVKMKKAIILVPTVLEDLKR
LQDTEKKERIPEAPPAPVHPVRSLQSRATGTTQSTSQLVPMKFSPASKLI
IPVSSRISEVPEPPKTPEKPVPTITSKSTPPLDGTQKILNKLRACGVEVK
RASTQLNATTELNPTKNQETLDIMRKLQSKGIRCTKVRKS*

GM02985.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12629-PA 268 GF12629-PA 1..252 1..298 536 41.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22378-PA 354 GG22378-PA 1..354 1..340 1213 71.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20798-PA 387 GH20798-PA 1..380 1..337 552 37.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-PA 340 CG10265-PA 1..340 1..340 1758 100 Plus
CG10265-PC 240 CG10265-PC 1..238 1..238 1242 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20884-PA 329 GI20884-PA 1..327 1..340 573 40 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17022-PA 280 GL17022-PA 1..262 1..338 563 39.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10204-PA 280 GA10204-PA 1..262 1..338 559 39.1 Plus
Dpse\GA10204-PB 337 GA10204-PB 1..262 1..338 557 39.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20162-PA 316 GM20162-PA 1..81 1..81 436 92.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25640-PA 109 GD25640-PA 2..109 233..340 499 93.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20619-PA 312 GJ20619-PA 1..213 1..202 502 48.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19699-PA 302 GK19699-PA 1..302 1..339 640 42.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12267-PA 354 GE12267-PA 1..354 1..340 1278 74 Plus

GM02985.hyp Sequence

Translation from 56 to 1078

> GM02985.hyp
MNGSRKIKSMKTIRLGDVLYDDQKRLLTLCRSCECHFMTLQSFQRHLADC
PGVKYIVTPIEPLAFDDANRETRLVNGRQEIHIYDLEAVKKNTNTAIDWE
AELEDPRWYTNPKPTVQTIPKTNSKENIVKEDVVPLAKEPQEPEGVPAKR
PRSPPTTRRTILTSQQQRRSRACLTSPQPPAVKMKKAIILVPTVLEDLKR
LQDTEKKERIPEAPPAPVHPVRSLQSRATGTTQSTSQLVPMKFSPASKLI
IPVSSRISEVPEPPKTPEKPVPTITSKSTPPLDGTQKILNKLRACGVEVK
RASTQLNATTELNPTKNQETLDIMRKLQSKGIRCTKVRKS*

GM02985.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10265-PA 340 CG10265-PA 1..340 1..340 1758 100 Plus
CG10265-PC 240 CG10265-PC 1..238 1..238 1242 100 Plus