Clone GM03014 Report

Search the DGRC for GM03014

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:30
Well:14
Vector:pBS SK-
Associated Gene/TranscriptCG5903-RA
Protein status:GM03014.pep: gold
Preliminary Size:1323
Sequenced Size:1133

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5903 2001-01-01 Release 2 assignment
CG5903 2001-10-10 Blastp of sequenced clone
CG5903 2003-01-01 Sim4 clustering to Release 3
CG5903 2008-04-29 Release 5.5 accounting
CG5903 2008-08-15 Release 5.9 accounting
CG5903 2008-12-18 5.12 accounting

Clone Sequence Records

GM03014.complete Sequence

1133 bp (1133 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060852

> GM03014.complete
AAATGCAGAAAATAGATGACCTTACAAATTAATCTAATAGCAATACCGAT
ATATCGTGACCACCCTCACACGTGACAGCTGTGAACATCTGTTGCACGAA
TCACCCACTGCTTTCATTCGTCGTCATGCGTCATTCAGTCGAACCGTGCT
GTGACAAATTACGCAATGTCTAACAACTGATGTAAAACAAGCAATTTACC
AAACAGTTGGCCAAATTCCGTGTGTACACACACTCCGATCGACCCAGCGA
GGCACTTTAACCAGCTCCTGACCACTTCGAGATGCTGCGCAAAACGGCAA
CGATGGGAATCATGGCGGCGGTTGCCGTTAAAGCGGCTCCCGAGCCCCAG
AAACCAGCCTCCAGTGCGGCGGACTGCAGCCTGGTGTGCCGGCCCAGCGA
GCTGCCCATCTACGGCAGCTTGCGCAAGACAGAACCCAAGCCAGAACGGC
ATCCACCACAAGACTCTGTGCTGCACAAGAACCTGGAGGCCGGAGTCCGC
TATGTGCGCGAGGAGGTGCAGTCTGGATATAAGGCAGTGGCCGATCAAGC
CGGCATTGTCGGCCATTACGTGGAAACCGCTAAGGCACACACCCAGTCCA
CCATCGACATGCTGAACGAGCCCCAGAACTCCCTGCACCGCAGCGGAGCC
ATTGTGGTGGGCGGTCTGGCTGGTTTCATCTTCGCCGCCCGTGGAGGCTT
CATAAAGAAGGTGTTGTATTCGGGCATCGGAGCAGGTGCAGTCGCCTCCA
TGTGCTACCCCCGCCAGGCGGAAGAAAACTGCCGCGTGGTACTCTACGAG
GGCCGTAAGATCTTCGCCGTGGCCTACAACTTCATCAAGGGCGTAAAGCC
AGGAGAGGATGTTCCCGTAGTGCCCTTCCCTACCTCGCTGGAGGACCTTA
AGTACATGGCCAGTGACCTGTACGATGAGGCAAAGGATCTAATCTTCCCC
AAAAAGAAGTAGGAAGTGCCCTCCCGCTAAAGGAAACTCCTAGTCCACCT
CCATCCGGGCGAAAAGTGTGCATCGATTTAAGTTGTATGAAGCTTGAATT
CTATCCGAAAGTAGTTATCTCTTTTCTTGTTGCCAGAAATAAATTGGCCT
CGCGTCCCAAAAGTGAAAAAAAAAAAAAAAAAA

GM03014.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-RA 1324 CG5903-RA 77..1194 1..1118 5590 100 Plus
CG5903.c 1487 CG5903.c 1..1118 1..1118 5590 100 Plus
CG5903.a 1263 CG5903.a 77..1110 1..1034 5170 100 Plus
CG5903.a 1263 CG5903.a 1111..1142 1087..1118 160 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11970286..11970967 1115..434 3410 100 Minus
chr3R 27901430 chr3R 11971031..11971463 433..1 2165 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:15:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16145675..16146359 1118..434 3425 100 Minus
3R 32079331 3R 16146423..16146855 433..1 2165 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15886506..15887190 1118..434 3425 100 Minus
3R 31820162 3R 15887254..15887686 433..1 2165 100 Minus
Blast to na_te.dros performed 2019-03-15 21:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 5878..5910 117..85 111 81.8 Minus

GM03014.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:45:00 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11970286..11970967 434..1115 100 <- Minus
chr3R 11971031..11971463 1..433 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:02:28 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..681 282..962 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:49:01 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..681 282..962 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:56:37 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..681 282..962 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:17:49 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..681 282..962 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:31 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..681 282..962 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:33:10 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..1115 1..1115 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:49:01 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..1115 1..1115 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:56:37 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..1115 1..1115 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:17:49 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..1115 1..1115 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:31 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
CG5903-RA 1..1115 1..1115 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:00 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16145678..16146359 434..1115 100 <- Minus
3R 16146423..16146855 1..433 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:00 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16145678..16146359 434..1115 100 <- Minus
3R 16146423..16146855 1..433 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:45:00 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16145678..16146359 434..1115 100 <- Minus
3R 16146423..16146855 1..433 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:56:37 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11971400..11972081 434..1115 100 <- Minus
arm_3R 11972145..11972577 1..433 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:54:43 Download gff for GM03014.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15886509..15887190 434..1115 100 <- Minus
3R 15887254..15887686 1..433 100   Minus

GM03014.pep Sequence

Translation from 281 to 961

> GM03014.pep
MLRKTATMGIMAAVAVKAAPEPQKPASSAADCSLVCRPSELPIYGSLRKT
EPKPERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIVGHYVETA
KAHTQSTIDMLNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIG
AGAVASMCYPRQAEENCRVVLYEGRKIFAVAYNFIKGVKPGEDVPVVPFP
TSLEDLKYMASDLYDEAKDLIFPKKK*

GM03014.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18853-PA 225 GF18853-PA 1..225 1..226 954 79.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20157-PA 229 GG20157-PA 1..229 1..226 1137 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18837-PA 225 GH18837-PA 1..223 1..226 726 62.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-PC 226 CG5903-PC 1..226 1..226 1164 100 Plus
CG5903-PB 226 CG5903-PB 1..226 1..226 1164 100 Plus
CG5903-PA 226 CG5903-PA 1..226 1..226 1164 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10096-PA 223 GI10096-PA 1..223 1..226 734 65.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12403-PA 232 GL12403-PA 1..232 1..226 907 75.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19215-PA 232 GA19215-PA 1..232 1..226 903 74.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25730-PA 226 GM25730-PA 1..226 1..226 1175 97.8 Plus
Dsec\GM12968-PA 160 GM12968-PA 1..160 67..226 832 98.1 Plus
Dsec\GM25731-PA 117 GM25731-PA 1..117 110..226 608 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20307-PA 226 GD20307-PA 1..226 1..226 1173 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23832-PA 223 GJ23832-PA 20..223 27..226 768 69.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14013-PA 228 GK14013-PA 1..228 1..226 864 73 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26334-PA 229 GE26334-PA 1..229 1..226 1128 93 Plus

GM03014.hyp Sequence

Translation from 281 to 961

> GM03014.hyp
MLRKTATMGIMAAVAVKAAPEPQKPASSAADCSLVCRPSELPIYGSLRKT
EPKPERHPPQDSVLHKNLEAGVRYVREEVQSGYKAVADQAGIVGHYVETA
KAHTQSTIDMLNEPQNSLHRSGAIVVGGLAGFIFAARGGFIKKVLYSGIG
AGAVASMCYPRQAEENCRVVLYEGRKIFAVAYNFIKGVKPGEDVPVVPFP
TSLEDLKYMASDLYDEAKDLIFPKKK*

GM03014.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5903-PC 226 CG5903-PC 1..226 1..226 1164 100 Plus
CG5903-PB 226 CG5903-PB 1..226 1..226 1164 100 Plus
CG5903-PA 226 CG5903-PA 1..226 1..226 1164 100 Plus