Clone GM03430 Report

Search the DGRC for GM03430

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:34
Well:30
Vector:pBS SK-
Associated Gene/TranscriptCG4511-RA
Protein status:GM03430.pep: gold
Preliminary Size:1582
Sequenced Size:1438

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4511 2001-01-01 Release 2 assignment
CG4511 2001-10-10 Blastp of sequenced clone
CG4511 2003-01-01 Sim4 clustering to Release 3
CG4511 2008-04-29 Release 5.5 accounting
CG4511 2008-08-15 Release 5.9 accounting
CG4511 2008-12-18 5.12 accounting

Clone Sequence Records

GM03430.complete Sequence

1438 bp (1438 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060862

> GM03430.complete
CGAATCCATACGTCTAAATAAACTTTTAAGGACTAAAATCAATGAAATAA
GTGAAAATAAAAGAGTGCAAATAACGGAGAAACATCAAGACACGCGGAGG
AGCAGCAACTGGAAGAGGACAACATGGCCAACATCCTGGAGAACCAACTG
TTCACGGCCGCCAAGACCATCGAGCAGCAGCTGGACCAGCAGCTCGACCG
CCTGGACAACCTCGATTCGGATGACCTAAAGGTCCTGCGGGAGCAGCGGC
TCCGCGAAATGAAGGACCTGAACAACAAGAAGCAGGAGTGGCTCAGAAAC
GGTCATGGCACCTACACCGAGCTGGCCGACGAAAAAGAGTTCTTCGAGAT
GTCGAAAAAGTCGCCCAACATTGTTTGCCACTTTTACCGCGACAGCACCG
AGCGCTGCAAGATCGTGGACATGCACCTGAAGATCCTCGCGGCCAAGCAC
GTGGAGGCCAAGTTTTGCAAGGTGAATGCCGAAAAGACTCCATTCCTCAC
CCAGCGACTGCGCATCAAGGTGATACCCACCATCGCCCTGGTGAAGGACA
GCAAGACCAAGGACTTCATTGTCGGATTCACCGATCTGGGCAACTGCGAC
GACTTCGCCACCGAAATGCTGGAGTGGCGCATCGCCCACTCGGGGGCCAT
TGACTACAAGGGCGATCTGATGCAGCCACCAGATGTGAAACGCAAACCAT
TCATCAACCGCCCACAGAAGACAATACGTGGAGGCTACGACTCGGATGAC
TCCGATATAGATCTGGATGACTAACTACGGGCAGTCCATCCCACACTCTC
GATTACCCAAGCTCCAGCTTTCGTTCCACACTCCCACACAAGATACACTC
AAAAGCGATGGAGTAACAAAAACGGACACACACAAATCAAAACCTAGCAC
ATGGATCTAAACCAATTAGGCGTACTCTAGCGTTATTTATTTAATTATAC
GATTCCGATCCCTCTGCTACGGTCCCATCGCCACCTAGTGTAAGTGGCTA
ATTCGGTTGCCTTCCCCCCCGATTATGTGCTTTAATATCTATCAGTTCAA
TCAGCTGCCTCGAAGGCTGCGCCACTCTAGCGAGCTTAAGCGAACTCAAA
ATTTGATCTTTATGGTATTTGCAATTCCAAATGAATGTGCACCCTTTGCG
TATATATGTTAAGTTGAGCATAGTTTTACAAACTGCCCTCGCCCTCCAGA
AAACGGTGTACGTAAATCAAGAAACTAACATACACAGAGCATAAAAGACA
AGAAACTAAATATCTGGCATATATATATTTTTAAAATTTCGATAAAAGGT
GTATTGCATTTCCTACAGTAGAGGTAACTAACACTTACATATGTACAAGT
TTTTATATTTATTTTTGTAATTCTACAAAGCATCAAAGGAAATCAACGAT
TAAATAGCATGTTCAAAACAAAAAAAAAAAAAAAAAAA

GM03430.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-RA 1552 CG4511-RA 39..1459 1..1421 7060 99.7 Plus
CG4511-RB 1539 CG4511-RB 126..1485 62..1421 6770 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:44:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6680832..6681950 301..1419 5580 99.9 Plus
chr3R 27901430 chr3R 6680332..6680571 62..301 1185 99.6 Plus
chr3R 27901430 chr3R 6680072..6680134 1..63 300 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:15:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10855294..10856414 301..1421 5590 99.9 Plus
3R 32079331 3R 10854794..10855033 62..301 1185 99.6 Plus
3R 32079331 3R 10854534..10854596 1..63 300 98.4 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10596125..10597245 301..1421 5590 99.9 Plus
3R 31820162 3R 10595625..10595864 62..301 1185 99.5 Plus
3R 31820162 3R 10595365..10595427 1..63 300 98.4 Plus
Blast to na_te.dros performed 2019-03-16 09:44:06
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 8679..8736 1372..1317 114 69 Minus
Dvir\Penelope 4158 Dvir\Penelope DV49102 4158bp Derived from U49102 (Rel. 69, Last updated, Version 4). 1076..1119 1219..1262 112 72.7 Plus
Penelope 804 Penelope 804bp Derived from AF418572 (AF418572) (Rel. 70, Last updated, Version 3). 631..674 1219..1262 112 72.7 Plus

GM03430.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:45:05 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6680072..6680134 1..63 98 -> Plus
chr3R 6680334..6680570 64..300 99 -> Plus
chr3R 6680832..6681950 301..1419 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:02:44 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 1..651 124..774 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:44:33 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RB 1..651 124..774 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:57:26 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 1..651 124..774 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:13:24 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 1..651 124..774 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:25 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 1..651 124..774 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:27:27 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 32..1450 1..1419 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:44:33 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 36..1454 1..1419 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:26 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 34..1452 1..1419 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:13:24 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 32..1450 1..1419 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:25 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
CG4511-RA 34..1452 1..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:05 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10854534..10854596 1..63 98 -> Plus
3R 10854796..10855032 64..300 99 -> Plus
3R 10855294..10856412 301..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:05 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10854534..10854596 1..63 98 -> Plus
3R 10854796..10855032 64..300 99 -> Plus
3R 10855294..10856412 301..1419 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:05 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10854534..10854596 1..63 98 -> Plus
3R 10854796..10855032 64..300 99 -> Plus
3R 10855294..10856412 301..1419 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:26 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6680256..6680318 1..63 98 -> Plus
arm_3R 6680518..6680754 64..300 99 -> Plus
arm_3R 6681016..6682134 301..1419 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:58 Download gff for GM03430.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10595627..10595863 64..300 99 -> Plus
3R 10596125..10597243 301..1419 99   Plus
3R 10595365..10595427 1..63 98 -> Plus

GM03430.hyp Sequence

Translation from 123 to 773

> GM03430.hyp
MANILENQLFTAAKTIEQQLDQQLDRLDNLDSDDLKVLREQRLREMKDLN
NKKQEWLRNGHGTYTELADEKEFFEMSKKSPNIVCHFYRDSTERCKIVDM
HLKILAAKHVEAKFCKVNAEKTPFLTQRLRIKVIPTIALVKDSKTKDFIV
GFTDLGNCDDFATEMLEWRIAHSGAIDYKGDLMQPPDVKRKPFINRPQKT
IRGGYDSDDSDIDLDD*

GM03430.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-PB 216 CG4511-PB 1..216 1..216 1134 100 Plus
CG4511-PA 216 CG4511-PA 1..216 1..216 1134 100 Plus

GM03430.pep Sequence

Translation from 123 to 773

> GM03430.pep
MANILENQLFTAAKTIEQQLDQQLDRLDNLDSDDLKVLREQRLREMKDLN
NKKQEWLRNGHGTYTELADEKEFFEMSKKSPNIVCHFYRDSTERCKIVDM
HLKILAAKHVEAKFCKVNAEKTPFLTQRLRIKVIPTIALVKDSKTKDFIV
GFTDLGNCDDFATEMLEWRIAHSGAIDYKGDLMQPPDVKRKPFINRPQKT
IRGGYDSDDSDIDLDD*

GM03430.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23020-PA 216 GF23020-PA 1..216 1..216 1130 97.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17770-PA 216 GG17770-PA 1..216 1..216 1144 99.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17395-PA 216 GH17395-PA 1..205 1..205 1020 90.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4511-PB 216 CG4511-PB 1..216 1..216 1134 100 Plus
CG4511-PA 216 CG4511-PA 1..216 1..216 1134 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22723-PA 216 GI22723-PA 1..205 1..205 1006 88.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23457-PA 216 GL23457-PA 1..216 1..216 1085 92.1 Plus
Dper\GL14692-PA 431 GL14692-PA 220..419 5..204 880 79.5 Plus
Dper\GL22133-PA 131 GL22133-PA 1..128 46..190 398 57.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27264-PA 216 GA27264-PA 1..216 1..216 1085 92.1 Plus
Dpse\GA23727-PA 216 GA23727-PA 1..207 1..207 909 79.7 Plus
Dpse\GA28161-PA 150 GA28161-PA 1..150 1..150 745 93.3 Plus
Dpse\GA27388-PA 143 GA27388-PA 1..140 46..190 464 62.1 Plus
Dpse\GA27444-PA 167 GA27444-PA 10..129 63..179 267 44.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23907-PA 216 GM23907-PA 1..216 1..216 1144 99.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18719-PA 216 GD18719-PA 1..216 1..216 1144 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24662-PA 216 GJ24662-PA 1..205 1..205 1008 88.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22738-PA 216 GK22738-PA 1..205 1..205 1052 93.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26057-PA 216 GE26057-PA 1..216 1..216 1151 100 Plus
Dyak\GE17790-PA 153 GE17790-PA 11..129 52..176 350 56.8 Plus