Clone GM04147 Report

Search the DGRC for GM04147

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:41
Well:47
Vector:pBS SK-
Associated Gene/Transcriptdmpd-RA
Protein status:GM04147.pep: gold
Preliminary Size:2444
Sequenced Size:2462

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11866 2001-01-01 Release 2 assignment
CG11866 2001-10-10 Blastp of sequenced clone
CG11866 2003-01-01 Sim4 clustering to Release 3
CG11866 2008-04-29 Release 5.5 accounting
CG11866 2008-08-15 Release 5.9 accounting
CG11866 2008-12-18 5.12 accounting

Clone Sequence Records

GM04147.complete Sequence

2462 bp (2462 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060879

> GM04147.complete
TTTTAATTGTGCTCGAAAAACTGCGTTAAAGTGGATGTCAGCGTGGATGA
ACTGCGTCTCAAAGAACTAGACATATTGGACCACGGCGAAGCGCGTCCAA
AAACAATGCAATCGCAATAGTTCCATTTACTAAAACGGCAACTTCAAAAC
GCTGCTGCAAACGAATTCTGTCCATTTAGCACCGAAACGCCACTGGAAGC
AGAAGGAAATGGTGTCCACCCGCCAAATGTGCAGTGGAGGCGGTACGTCC
GCTTCGGAGGGGGTTTCGCCGTTCGGGGGCGCGGGTTCGGGATCGGCCTC
TGGAACGGGAATGGCTTCCGGATCAGCAGTGTCATCCGGATCGGGTACTG
GAGTACAAGAGCCCCCCGAGTCCACAGCAAACCGTTCCTCCGTCCTGCGG
CGAACCACCAGCTATCAGGGTAACCAGGCCCACAGTTCTTATCGTGTCGT
CTCGGCGGGCAGCCTGGCCGAGTCCGCCAGTGCGGTGACTCGCCTCCACT
CGTACACCATGCAGATGCAACGGCAGCGTCCACCGACTGCCACCACCACC
ACCACCACCAGCGCACCCAGTCTGTACGATCTTCCCAACGAGCTGATTGA
GAAGATCCTCAGCTACGTGGACTACAAGAAAGTTTCAAATCTCAGATTGG
TGTCGCACCGCATGAACGACATTTGCATGGCCATGCTGAACACAGCCTTC
ACCAAGCAGATCAAGACCACATTGAGCCGCTTCCAGGCGATCAAGGCCAG
CATGCCGCGCCGGGAGTCCCATCGTCGTAATCATCCGTTGGCCTGCGAGT
GCGACATCATCGAGACATGCTACATGCGTCTATCCCTGCTCCAGATGTCC
ATGGGCAAGCACATCGAGCGGGGCCATTGTTGCTTCTTTCCGGGCGCCAT
ACTAGACGAAGTCCAGGCGATTCTCAATTATATCAGTATTACGCCCAGGC
TGCAGCGACCTTATCGGGTAACCGACGAGCTCTTCGATCTCTCCACTATG
GCCATGGAATACTTTAAGGACCGCATCGAGGCCACGCTACCGGGGCTGGC
GTATTTCAACAAGGACTTCTATACGCTGCCCACTACAACTAAGCGACCCA
CGCTTGCCATCAGTTCAGATCTCGAAGACAGCGCCAGCAACTCGCCGCCT
CAGAACCATATGGTGCTCCGCAAGGGCATCCGCAAGATCAAGCAGGGCAT
GAAGATGTACAATAACCAGCTATCGGTGCTGCGCACCGAGCTTCGCACCT
GCAAGCGCAAGGCCGCCGAGCAGAGCAAGCAGCTGGCTGAGCAATCAAAT
CTAATATCGGAGCAGCAGAAGCAGACGCTGGAGTATGCCAATCGTCTGGA
CGAAAACGACAAGAAGAACGAGGAGATGTCTCGCAAGTTCTCCACCCTTT
TGCAGGAGCTCAACAAGTGCAAGACTGAGCTGCAGTTCTGGCGTTCGAAG
AGTCCGGCCATCCCTGCCGTATGCAGTTCGTGCAATCAAAAGGTGGCGCC
TGTGGTGCCGCCTGAAGATTTTCAAGCGCTGGTCAACCAGGGTGTGGATC
CCGAGCACTTTATTATCATCAACGAAGATGTGGATGCCGAGAGCGATGTT
AGTGTGGGCGAGCTAAAGGAGTTTGCCTCGCCGGATGAGTCCACCACGGC
CAAGTTGCTGGCCGTGAGCACAGCAGCCAAGAATCTTAAGCGCAAGATGC
CATCAGAGAGCCAGTCCAATGCCATAGCGTCCACCTCGAAGGCAGCAGAG
GTTGCCCAGTCCCAATCGCAGCCGATGGCCACCGGAAATGCAGGAGCTGC
CAAAGCTGCGGGAGGCTACTCCCCAAAACTGTTTTATGGCAATCATCAGC
GAAGCGGCGTGATTGTCAGTCCTGTGTCCCAGAATCTGGGGGTGGCTGCG
ACAACGGACAATGTGGCGCCCGGATCGGAGGCTCTTGAGGAGCCGGAGGA
GGCGAAAAAAGCACGTAGAGTACAAAAGGCCAACAGATATGTAAATACGC
CCGGCAAACGCAGTAAATAAGCATTAGGACCTACGCATATACACTTTACA
TATTTTTTACCACTTATTTACATATAAAGCGTGCATGCCGTCGTTCACCT
GACCCCACGGATGTGGATTAGGGAACGAGGCATGCGCCGTAGTGTTAACG
GAGGAATCAAATTAATATTATATACACATATATCTATTAATGTCAAATGC
AATAGGCATTTCGAATATTATTCATTATTATTATTATTATTATCACGTAC
AAGTGTCTGTATGTTCTTCGGTTTTAACGCCCCGCAAAAACAAATTGTAG
TTAACCACGAACATCACACGAATCCGGCAGTCATTGGCAGAGCAAAACAG
ATAATAATAATTAAAAAGCAAATTAATTTTAACTAAGAAATACAAAAAGA
AAAACAGCAAAGAAATATTTTAAATAAAACTTTAAAAACATTAAAAAAAA
AAAAAAAAAAAA

GM04147.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG11866-RA 2601 CG11866-RA 157..2601 1..2442 12065 99.6 Plus
CG11866.a 2514 CG11866.a 208..2514 139..2442 11375 99.6 Plus
CCS-RA 1489 CCS-RA 1221..1489 2446..2181 1245 98.1 Minus
CG11866.a 2514 CG11866.a 39..176 1..138 690 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 6007936..6008978 1400..2442 5215 100 Plus
chr2R 21145070 chr2R 6005560..6006073 138..651 2570 100 Plus
chr2R 21145070 chr2R 6007581..6007889 1098..1406 1545 100 Plus
chr2R 21145070 chr2R 6007008..6007257 649..898 1235 99.6 Plus
chr2R 21145070 chr2R 6007322..6007520 899..1097 995 100 Plus
chr2R 21145070 chr2R 6005260..6005397 1..138 690 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:16:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10120406..10121455 1400..2446 5125 99.4 Plus
2R 25286936 2R 10118031..10118544 138..651 2555 99.8 Plus
2R 25286936 2R 10120051..10120359 1098..1406 1530 99.7 Plus
2R 25286936 2R 10119478..10119727 649..898 1235 99.6 Plus
2R 25286936 2R 10119792..10119990 899..1097 995 100 Plus
2R 25286936 2R 10117731..10117868 1..138 690 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 10121605..10122654 1400..2446 5135 99.4 Plus
2R 25260384 2R 10119230..10119743 138..651 2555 99.8 Plus
2R 25260384 2R 10121250..10121558 1098..1406 1530 99.6 Plus
2R 25260384 2R 10120677..10120926 649..898 1235 99.6 Plus
2R 25260384 2R 10120991..10121189 899..1097 995 100 Plus
2R 25260384 2R 10118930..10119067 1..138 690 100 Plus
Blast to na_te.dros performed on 2019-03-16 17:18:35 has no hits.

GM04147.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:19:29 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 6005260..6005397 1..138 100 -> Plus
chr2R 6005561..6006071 139..649 95 -> Plus
chr2R 6007009..6007257 650..898 99 -> Plus
chr2R 6007322..6007520 899..1097 100 -> Plus
chr2R 6007581..6007888 1098..1405 100 -> Plus
chr2R 6007942..6008978 1406..2442 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:03:12 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 1..1812 209..2020 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:43:40 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RB 1..1812 209..2020 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:54:20 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 1..1812 209..2020 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:31 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 1..1812 209..2020 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:56:27 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
dmpd-RA 1..1812 209..2020 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:26:18 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 39..2483 1..2442 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:43:40 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 39..2483 1..2442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:54:20 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 38..2482 1..2442 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:31 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
CG11866-RA 39..2483 1..2442 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:56:27 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
dmpd-RA 38..2482 1..2442 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:29 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10117731..10117868 1..138 100 -> Plus
2R 10118032..10118542 139..649 99 -> Plus
2R 10119479..10119727 650..898 99 -> Plus
2R 10119792..10119990 899..1097 100 -> Plus
2R 10120051..10120358 1098..1405 99 -> Plus
2R 10120412..10121451 1406..2442 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:29 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10117731..10117868 1..138 100 -> Plus
2R 10118032..10118542 139..649 99 -> Plus
2R 10119479..10119727 650..898 99 -> Plus
2R 10119792..10119990 899..1097 100 -> Plus
2R 10120051..10120358 1098..1405 99 -> Plus
2R 10120412..10121451 1406..2442 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:19:29 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10117731..10117868 1..138 100 -> Plus
2R 10118032..10118542 139..649 99 -> Plus
2R 10119479..10119727 650..898 99 -> Plus
2R 10119792..10119990 899..1097 100 -> Plus
2R 10120051..10120358 1098..1405 99 -> Plus
2R 10120412..10121451 1406..2442 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:54:20 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6005236..6005373 1..138 100 -> Plus
arm_2R 6007297..6007495 899..1097 100 -> Plus
arm_2R 6005537..6006047 139..649 99 -> Plus
arm_2R 6006984..6007232 650..898 99 -> Plus
arm_2R 6007556..6007863 1098..1405 99 -> Plus
arm_2R 6007917..6008956 1406..2442 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:01 Download gff for GM04147.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10119231..10119741 139..649 99 -> Plus
2R 10120678..10120926 650..898 99 -> Plus
2R 10120991..10121189 899..1097 100 -> Plus
2R 10121250..10121557 1098..1405 99 -> Plus
2R 10121611..10122650 1406..2442 99   Plus
2R 10118930..10119067 1..138 100 -> Plus

GM04147.pep Sequence

Translation from 208 to 2019

> GM04147.pep
MVSTRQMCSGGGTSASEGVSPFGGAGSGSASGTGMASGSAVSSGSGTGVQ
EPPESTANRSSVLRRTTSYQGNQAHSSYRVVSAGSLAESASAVTRLHSYT
MQMQRQRPPTATTTTTTSAPSLYDLPNELIEKILSYVDYKKVSNLRLVSH
RMNDICMAMLNTAFTKQIKTTLSRFQAIKASMPRRESHRRNHPLACECDI
IETCYMRLSLLQMSMGKHIERGHCCFFPGAILDEVQAILNYISITPRLQR
PYRVTDELFDLSTMAMEYFKDRIEATLPGLAYFNKDFYTLPTTTKRPTLA
ISSDLEDSASNSPPQNHMVLRKGIRKIKQGMKMYNNQLSVLRTELRTCKR
KAAEQSKQLAEQSNLISEQQKQTLEYANRLDENDKKNEEMSRKFSTLLQE
LNKCKTELQFWRSKSPAIPAVCSSCNQKVAPVVPPEDFQALVNQGVDPEH
FIIINEDVDAESDVSVGELKEFASPDESTTAKLLAVSTAAKNLKRKMPSE
SQSNAIASTSKAAEVAQSQSQPMATGNAGAAKAAGGYSPKLFYGNHQRSG
VIVSPVSQNLGVAATTDNVAPGSEALEEPEEAKKARRVQKANRYVNTPGK
RSK*

GM04147.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13725-PA 605 GF13725-PA 1..605 1..603 2408 77.5 Plus
Dana\GF24660-PA 316 GF24660-PA 2..154 121..273 320 40.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24142-PA 604 GG24142-PA 1..604 1..603 2724 91.3 Plus
Dere\GG14032-PA 314 GG14032-PA 2..154 121..273 305 40.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22835-PA 595 GH22835-PA 25..595 56..603 1873 65 Plus
Dgri\GH16208-PA 313 GH16208-PA 3..165 122..284 344 40.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
dmpd-PB 603 CG11866-PB 1..603 1..603 3061 100 Plus
dmpd-PA 603 CG11866-PA 1..603 1..603 3061 100 Plus
pall-PA 314 CG3428-PA 2..284 121..382 305 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21213-PA 559 GI21213-PA 1..559 1..603 1902 65.1 Plus
Dmoj\GI13354-PA 351 GI13354-PA 3..154 122..273 317 40.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20033-PA 579 GL20033-PA 1..579 1..603 2117 70.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11246-PA 579 GA11246-PA 1..579 1..603 2117 70.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21188-PA 601 GM21188-PA 1..601 1..603 3123 96.7 Plus
Dsec\GM24866-PA 307 GM24866-PA 2..154 121..273 309 40.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10716-PA 601 GD10716-PA 1..601 1..603 3150 97.3 Plus
Dsim\GD12918-PA 475 GD12918-PA 2..154 121..273 308 40.5 Plus
Dsim\GD12918-PA 475 GD12918-PA 201..315 159..273 261 42.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20816-PA 577 GJ20816-PA 1..577 1..603 1919 63 Plus
Dvir\GJ13184-PA 342 GJ13184-PA 3..154 122..273 330 41.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21976-PA 608 GK21976-PA 32..608 54..603 1998 67.1 Plus
Dwil\GK20333-PA 340 GK20333-PA 2..154 121..273 316 41.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19340-PA 605 GE19340-PA 1..605 1..603 2779 91.4 Plus
Dyak\GE21235-PA 314 GE21235-PA 20..154 139..273 273 40 Plus

GM04147.hyp Sequence

Translation from 208 to 2019

> GM04147.hyp
MVSTRQMCSGGGTSASEGVSPFGGAGSGSASGTGMASGSAVSSGSGTGVQ
EPPESTANRSSVLRRTTSYQGNQAHSSYRVVSAGSLAESASAVTRLHSYT
MQMQRQRPPTATTTTTTSAPSLYDLPNELIEKILSYVDYKKVSNLRLVSH
RMNDICMAMLNTAFTKQIKTTLSRFQAIKASMPRRESHRRNHPLACECDI
IETCYMRLSLLQMSMGKHIERGHCCFFPGAILDEVQAILNYISITPRLQR
PYRVTDELFDLSTMAMEYFKDRIEATLPGLAYFNKDFYTLPTTTKRPTLA
ISSDLEDSASNSPPQNHMVLRKGIRKIKQGMKMYNNQLSVLRTELRTCKR
KAAEQSKQLAEQSNLISEQQKQTLEYANRLDENDKKNEEMSRKFSTLLQE
LNKCKTELQFWRSKSPAIPAVCSSCNQKVAPVVPPEDFQALVNQGVDPEH
FIIINEDVDAESDVSVGELKEFASPDESTTAKLLAVSTAAKNLKRKMPSE
SQSNAIASTSKAAEVAQSQSQPMATGNAGAAKAAGGYSPKLFYGNHQRSG
VIVSPVSQNLGVAATTDNVAPGSEALEEPEEAKKARRVQKANRYVNTPGK
RSK*

GM04147.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 08:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
dmpd-PB 603 CG11866-PB 1..603 1..603 3061 100 Plus
dmpd-PA 603 CG11866-PA 1..603 1..603 3061 100 Plus
pall-PA 314 CG3428-PA 2..284 121..382 305 30.2 Plus