Clone GM04589 Report

Search the DGRC for GM04589

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:45
Well:89
Vector:pBS SK-
Associated Gene/TranscriptCG32803-RB
Protein status:GM04589.pep: gold
Preliminary Size:1013
Sequenced Size:814

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14819 2001-01-01 Release 2 assignment
CG32803 2001-10-10 Blastp of sequenced clone
CG32803 2008-04-29 Release 5.5 accounting
CG32803 2008-08-15 Release 5.9 accounting
CG32803 2008-12-18 5.12 accounting

Clone Sequence Records

GM04589.complete Sequence

814 bp (814 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060889

> GM04589.complete
GAGCACGTAAAGATACATGGCCCAGGCGATCGTAGTGCAGGAGTTCTGAC
TGGCGACCAGTTCCTGGAGAGCTTGCTCCAGACTCTCTACAGGTCATGTA
TGTCCACTAGTTGAAGTACTATCTGTAAAAGCGCTTAATTGCTTACTGCC
ACAATTAGTTACTTATATATGTACTACTCTGTACGGTTGTTAACCTGTTT
TATGCATCACACCGCGTAACAAAAGTTGCCTTTGTTATAACGTTGCCATA
TTGCAGGGCTTCAAATCTGCCGCCTGGCAGATTTTGTGATGTCCGAGCTA
GGTGGAAATGATTTCCTGGAGGCCACCGCGGCCTGGTGCACCCGGAATCC
GCACGTTGCTATCTGCCTGCTAGCTGGTGGTCTTGTATTCATGCTGCCCT
TCCTTATAATATTTGGGTTTGGAATAGCCACCATGGTTATGACCTTTACA
GGTTTGCTGGTGCTAGAAGGCACACTCCTGACCATTGTGTCCATGGTGTT
CTTCGCCTGCCTGGGAGGACTAGTCATAATGGTACCTCTCTTCGGTGTCG
CCGCTGTTGCTGCCTATTTCGGATTTGCCCAGGTGTATGGCCTATGTGAT
GGAATAGAGATCCATAAGAGCGCGTGGGTCATGTTCTTTAGGGATCAACG
GAAGGCCGGCGATCCGCCGCCAGCTGCTGTGACCATAACCGATGAACCCA
CTTCTACGACTGCATAAACCAATATTGCTTGCCCAACTTAAATATGTATT
AAGAAATTAAAGACCAGTGTTTGAATACTTTTGGAAATTTAAAAAAAAAA
AAAAAAAAAAAAAA

GM04589.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32803-RB 876 CG32803-RB 82..876 1..795 3975 100 Plus
CG32803-RA 940 CG32803-RA 400..938 257..795 2695 100 Plus
nc_21462.b 794 nc_21462.b 1..180 180..1 900 100 Minus
CG32803-RA 940 CG32803-RA 303..400 1..98 490 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1794907..1795376 470..1 2350 100 Minus
chrX 22417052 chrX 1794536..1794858 790..468 1615 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:16:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1901064..1901533 470..1 2350 100 Minus
X 23542271 X 1900688..1901015 795..468 1640 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1909162..1909631 470..1 2350 100 Minus
X 23527363 X 1908786..1909113 795..468 1640 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:40:03 has no hits.

GM04589.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:41:11 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1794536..1794856 470..790 100 <- Minus
chrX 1794908..1795376 1..469 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:03:31 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 179..642 254..717 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:19:12 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 179..642 254..717 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:55:13 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RC 266..729 254..717 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:58:09 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RA 179..642 254..717 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:59:55 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RC 266..729 254..717 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:47:44 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RB 1..790 1..790 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:19:12 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RB 1..790 1..790 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:55:13 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RB 1..790 1..790 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:58:09 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RB 1..790 1..790 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:59:55 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
CG32803-RB 1..790 1..790 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:41:11 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
X 1900693..1901013 470..790 100 <- Minus
X 1901065..1901533 1..469 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:41:11 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
X 1900693..1901013 470..790 100 <- Minus
X 1901065..1901533 1..469 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:41:11 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
X 1900693..1901013 470..790 100 <- Minus
X 1901065..1901533 1..469 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:55:13 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1794726..1795046 470..790 100 <- Minus
arm_X 1795098..1795566 1..469 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:30:45 Download gff for GM04589.complete
Subject Subject Range Query Range Percent Splice Strand
X 1908791..1909111 470..790 100 <- Minus
X 1909163..1909631 1..469 100   Minus

GM04589.hyp Sequence

Translation from 288 to 716

> GM04589.hyp
MSELGGNDFLEATAAWCTRNPHVAICLLAGGLVFMLPFLIIFGFGIATMV
MTFTGLLVLEGTLLTIVSMVFFACLGGLVIMVPLFGVAAVAAYFGFAQVY
GLCDGIEIHKSAWVMFFRDQRKAGDPPPAAVTITDEPTSTTA*

GM04589.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG32803-PB 142 CG32803-PB 1..142 1..142 738 100 Plus
CG32803-PA 213 CG32803-PA 72..213 1..142 738 100 Plus
CG32803-PC 242 CG32803-PC 101..242 1..142 738 100 Plus
CG32803-PD 207 CG32803-PD 72..207 1..142 694 95.8 Plus

GM04589.pep Sequence

Translation from 288 to 716

> GM04589.pep
MSELGGNDFLEATAAWCTRNPHVAICLLAGGLVFMLPFLIIFGFGIATMV
MTFTGLLVLEGTLLTIVSMVFFACLGGLVIMVPLFGVAAVAAYFGFAQVY
GLCDGIEIHKSAWVMFFRDQRKAGDPPPAAVTITDEPTSTTA*

GM04589.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19473-PA 183 GF19473-PA 41..178 1..141 396 55.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12669-PA 213 GG12669-PA 72..212 1..141 679 92.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17846-PA 151 GH17846-PA 16..151 1..140 317 47.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32803-PA 213 CG32803-PA 72..213 1..142 738 100 Plus
CG32803-PC 242 CG32803-PC 101..242 1..142 738 100 Plus
CG32803-PD 207 CG32803-PD 72..207 1..142 694 95.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21759-PA 126 GI21759-PA 1..126 1..138 326 51.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18346-PA 194 GL18346-PA 57..187 6..137 458 68.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27596-PA 305 GA27596-PA 181..302 1..123 451 73.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18938-PA 212 GM18938-PA 72..212 1..142 689 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16404-PA 212 GD16404-PA 72..212 1..142 696 95.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19137-PA 164 GJ19137-PA 35..164 1..134 291 49.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16375-PA 236 GK16375-PA 92..218 1..132 372 56.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16997-PA 213 GE16997-PA 72..212 1..141 659 89.4 Plus