Clone GM04951 Report

Search the DGRC for GM04951

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:49
Well:51
Vector:pBS SK-
Associated Gene/TranscriptRPA2-RA
Protein status:GM04951.pep: gold
Preliminary Size:1186
Sequenced Size:965

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9273 2001-01-01 Release 2 assignment
CG9273 2001-11-29 Blastp of sequenced clone
CG9273 2003-01-01 Sim4 clustering to Release 3
RPA2 2008-04-29 Release 5.5 accounting
RPA2 2008-08-15 Release 5.9 accounting
RPA2 2008-12-18 5.12 accounting

Clone Sequence Records

GM04951.complete Sequence

965 bp (965 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069259

> GM04951.complete
CGTTTTATTGTTTACCAGCGGCCCTTGTGAAATTATATAGAATACTCAAT
TACAAAATCCCTCAAAAGCCAAGAAAATGAATGATTCATTTGGAGATTTC
AATGCCACACAAACTGCGCCAACTGGAGCCGCCAGCAATCAAAAGGGAGA
AGGAATAGTGCCCCTGGTGGTGAAGCAGATTGTGGACGCCCCAGAGGGAA
ACATCGAGTTGTTCGGCATGCAGTACGCCATGGCATGTGTTGTGGCCATA
GTGCGGAACGTGGAGACTTCCTCGACGAAGATCACCTACACCCTGGAGGA
TCATAGCGGCAGGATCGATGCGCACTACTGGCTTGAGGAGGGCGACGCTC
TCAAGGCACCCGAAGTAATGGTCAACAACTACGTGAAGGTCTACGGCACC
ACCCGGTCGCAAGGCGGTTCCAAAACCCTAATGATCTTCAAGCTACTGCC
CGTTTTGGATCCCAACGAGGTGTGCACCCACCTGCTGGAAGTACTCAATG
CCCGCTACAGGGCCGAGGACTACCAGAGCAAGGGTGGAGCTGGAGCTGGT
GCAGGGGCTTCTTCCGGCTCAGGCTCCATAGCTGATTTCACCGCCTCCCA
GAGCTCGGCCATTGTCAGTGGGCTGGAGCCCAAGCAGCAGGCCGTATTCC
AGGCCATCAAGAGCAATGTTTCCGAGGAGGGCATCTCCCGCAAGGAACTG
AAAGCCAAATTCTCCCACATCAGCGACTCTGAGTTGACCAACATTCTGGA
CTTTATGATTTCCGAGGGACACATTTATTCCAGCATTGACGCAGATCACT
TTATTTGCACAATGTAAATCAAATCGTGTAACCACTATTTAATTTAAAAA
TGCGTATTGAATATATGTATTAAGTTTTTGAAAAACGGGAACATTTTCCA
TATATTAGTTGTACATTAAATATTTCTTATATAATCAGAAAAAAAAAAAA
AAAAAAAAAAAAAAA

GM04951.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
RPA2-RA 1052 RPA2-RA 93..1032 1..941 4665 99.8 Plus
RPA2.a 957 RPA2.a 24..957 1..938 4565 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:50:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20923793..20924379 738..152 2935 100 Minus
chr2L 23010047 chr2L 20923504..20923703 938..739 1000 100 Minus
chr2L 23010047 chr2L 20924563..20924650 89..1 395 98.9 Minus
chr2L 23010047 chr2L 20924442..20924504 152..90 315 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:17:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20925264..20925850 738..152 2935 100 Minus
2L 23513712 2L 20924972..20925174 941..739 1015 100 Minus
2L 23513712 2L 20926034..20926121 89..1 395 98.9 Minus
2L 23513712 2L 20925913..20925975 152..90 315 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20925264..20925850 738..152 2935 100 Minus
2L 23513712 2L 20924972..20925174 941..739 1015 100 Minus
2L 23513712 2L 20926034..20926121 89..1 405 98.8 Minus
2L 23513712 2L 20925913..20925975 152..90 315 100 Minus
Blast to na_te.dros performed 2019-03-16 05:50:10
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 6359..6405 116..71 133 78.7 Minus

GM04951.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:50:50 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20923504..20923703 739..938 100 <- Minus
chr2L 20923793..20924379 152..738 100 <- Minus
chr2L 20924443..20924504 90..151 100 <- Minus
chr2L 20924563..20924650 1..89 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:03:48 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 1..741 77..817 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:24:08 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 1..741 77..817 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:38:14 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 1..741 77..817 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:50:49 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 1..741 77..817 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:08:56 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 1..741 77..817 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:59:34 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 24..960 1..938 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:24:08 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 24..960 1..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:38:14 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 27..963 1..938 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:50:49 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 24..960 1..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:08:56 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
RPA2-RA 27..963 1..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:50 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20924975..20925174 739..938 100 <- Minus
2L 20925264..20925850 152..738 100 <- Minus
2L 20925914..20925975 90..151 100 <- Minus
2L 20926034..20926121 1..89 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:50 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20924975..20925174 739..938 100 <- Minus
2L 20925264..20925850 152..738 100 <- Minus
2L 20925914..20925975 90..151 100 <- Minus
2L 20926034..20926121 1..89 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:50:50 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20924975..20925174 739..938 100 <- Minus
2L 20925264..20925850 152..738 100 <- Minus
2L 20925914..20925975 90..151 100 <- Minus
2L 20926034..20926121 1..89 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:38:14 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20925914..20925975 90..151 100 <- Minus
arm_2L 20926034..20926121 1..89 98   Minus
arm_2L 20924975..20925174 739..938 100 <- Minus
arm_2L 20925264..20925850 152..738 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:27:18 Download gff for GM04951.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20925264..20925850 152..738 100 <- Minus
2L 20925914..20925975 90..151 100 <- Minus
2L 20926034..20926121 1..89 98   Minus
2L 20924975..20925174 739..938 100 <- Minus

GM04951.hyp Sequence

Translation from 76 to 816

> GM04951.hyp
MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQAVFQAIKSNVSE
EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM*

GM04951.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
RPA2-PB 246 CG9273-PB 1..246 1..246 1250 100 Plus
RPA2-PA 246 CG9273-PA 1..246 1..246 1250 100 Plus

GM04951.pep Sequence

Translation from 76 to 816

> GM04951.pep
MNDSFGDFNATQTAPTGAASNQKGEGIVPLVVKQIVDAPEGNIELFGMQY
AMACVVAIVRNVETSSTKITYTLEDHSGRIDAHYWLEEGDALKAPEVMVN
NYVKVYGTTRSQGGSKTLMIFKLLPVLDPNEVCTHLLEVLNARYRAEDYQ
SKGGAGAGAGASSGSGSIADFTASQSSAIVSGLEPKQQAVFQAIKSNVSE
EGISRKELKAKFSHISDSELTNILDFMISEGHIYSSIDADHFICTM*

GM04951.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24241-PA 245 GF24241-PA 1..245 1..246 1212 91.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21537-PA 246 GG21537-PA 1..246 1..246 1293 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13058-PA 240 GH13058-PA 1..240 1..246 908 69.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
RPA2-PB 246 CG9273-PB 1..246 1..246 1250 100 Plus
RPA2-PA 246 CG9273-PA 1..246 1..246 1250 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18202-PA 242 GI18202-PA 1..242 1..246 959 70.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19582-PA 237 GL19582-PA 1..237 1..246 1160 86.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21663-PA 237 GA21663-PA 1..237 1..246 1160 86.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23291-PA 246 GM23291-PA 1..246 1..246 1302 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21666-PA 246 GD21666-PA 1..246 1..246 1305 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14710-PA 242 GJ14710-PA 1..242 1..246 920 69.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24313-PA 239 GK24313-PA 1..239 1..246 1045 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13014-PA 244 GE13014-PA 1..244 1..246 1261 95.9 Plus