Clone GM05057 Report

Search the DGRC for GM05057

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:50
Well:57
Vector:pBS SK-
Associated Gene/TranscriptCG7382-RA
Protein status:GM05057.pep: gold
Preliminary Size:1111
Sequenced Size:899

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7382 2001-01-01 Release 2 assignment
CG7382 2003-01-01 Sim4 clustering to Release 3
CG7382 2003-02-28 Blastp of sequenced clone
CG7382 2008-04-29 Release 5.5 accounting
CG7382 2008-08-15 Release 5.9 accounting
CG7382 2008-12-18 5.12 accounting

Clone Sequence Records

GM05057.complete Sequence

899 bp (899 high quality bases) assembled on 2003-02-28

GenBank Submission: AY060901

> GM05057.complete
AACTAAACAGCTGATTAGAATTCTTTTTTTCGTAAAGTACGTTTATTTGT
TTTTTACCATTGATTTCGTCGTGAACGATGTCACGGCTAGCTTTATTGCG
CAATTTGGTCACTCAGCGGCAAAATTTGTTGCCCACCAACTTTGCCAGGT
TAAAATGTGCGGCGGCGATGCACTGGAGTCCACATTTGCGACAGGAAGCG
TCGCGCGATGGCGGCGGATCCCTTCAAAGATCGCAGGATAACACCCAGGT
GTCGACGGATGTGCGCCCCATTGGCGAGAAGATCAAGGAGAACACCAAGA
CGGCCAGTTATACGGCGATTATAATCGCCGGATTAGGGGTGACCTGCGTG
ATGTTCTTTGCCATATTCCGAGAGCTATTCTCCAGCGAAAGCCCGAACAA
TATATACGCGGACGCGTTAAGACGTGTGGTCGAAGATCCGCGGGTACAGG
ATGCAATTGGTGCGCCCATCAAGGGATTCGGCGAGACATCCAGGCGCGGT
CGCAGACAGCATGTGGCGCACTCGAGCTACGAGCGCAATGGAAAGCCCCA
CATGCGGATGCAGTTTTATGTGCAGGGCTTGAGGAACAAGGCCACCGTGC
AGCTGGAGTCCAGAAGGAGTGACTCTGGTAAACTGGAGTATCGTTATCTG
TTCGTGCAATTGGATCACTATCCCCGCACCACCATCATCCTTGAGGACAA
CCGTGCATTTGACCCCACCCCCGAGCCAGCGTCCGCTGGATCTTCCTTTG
GCAACCTAGCCCTGATGTCCAATAGCCGGGATAAGTAGGCGGATCCTTCC
GATCTTCTGCTCTCCTCTTAAATTCTCTGTACATTTGTTATATTTATTAT
TTGACTGACAATGAAATTGCATTGGGTAACCAAAAAAAAAAAAAAAAAA

GM05057.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:16:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-RA 986 CG7382-RA 90..972 1..883 4355 99.5 Plus
CG14020-RA 1127 CG14020-RA 1069..1127 883..825 295 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5518310..5518720 617..207 1995 99 Minus
chr2L 23010047 chr2L 5517991..5518255 881..617 1325 100 Minus
chr2L 23010047 chr2L 5518781..5518987 207..1 1035 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:17:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5519212..5519622 617..207 1995 99 Minus
2L 23513712 2L 5518891..5519157 883..617 1335 100 Minus
2L 23513712 2L 5519683..5519889 207..1 1035 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5519212..5519622 617..207 1995 99 Minus
2L 23513712 2L 5518891..5519157 883..617 1335 100 Minus
2L 23513712 2L 5519683..5519889 207..1 1035 100 Minus
Blast to na_te.dros performed 2019-03-15 17:27:41
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 902..970 87..20 144 69.6 Minus

GM05057.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:28:23 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5517991..5518254 618..881 100 <- Minus
chr2L 5518310..5518719 208..617 99 <- Minus
chr2L 5518781..5518987 1..207 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:03:53 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..711 78..788 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:46:51 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..711 78..788 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:37:46 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..711 78..788 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:38:17 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..711 78..788 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:57 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..711 78..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:58:30 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..881 1..881 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:46:51 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..881 1..881 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:37:46 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 8..888 1..881 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:38:17 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 1..881 1..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:57 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
CG7382-RA 8..888 1..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:23 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5518893..5519156 618..881 100 <- Minus
2L 5519212..5519621 208..617 99 <- Minus
2L 5519683..5519889 1..207 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:23 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5518893..5519156 618..881 100 <- Minus
2L 5519212..5519621 208..617 99 <- Minus
2L 5519683..5519889 1..207 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:28:23 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5518893..5519156 618..881 100 <- Minus
2L 5519212..5519621 208..617 99 <- Minus
2L 5519683..5519889 1..207 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:37:46 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5518893..5519156 618..881 100 <- Minus
arm_2L 5519212..5519621 208..617 99 <- Minus
arm_2L 5519683..5519889 1..207 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:08:33 Download gff for GM05057.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5518893..5519156 618..881 100 <- Minus
2L 5519212..5519621 208..617 99 <- Minus
2L 5519683..5519889 1..207 100   Minus

GM05057.hyp Sequence

Translation from 77 to 787

> GM05057.hyp
MSRLALLRNLVTQRQNLLPTNFARLKCAAAMHWSPHLRQEASRDGGGSLQ
RSQDNTQVSTDVRPIGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFREL
FSSESPNNIYADALRRVVEDPRVQDAIGAPIKGFGETSRRGRRQHVAHSS
YERNGKPHMRMQFYVQGLRNKATVQLESRRSDSGKLEYRYLFVQLDHYPR
TTIILEDNRAFDPTPEPASAGSSFGNLALMSNSRDK*

GM05057.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:45:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-PA 236 CG7382-PA 1..236 1..236 1212 100 Plus

GM05057.pep Sequence

Translation from 77 to 787

> GM05057.pep
MSRLALLRNLVTQRQNLLPTNFARLKCAAAMHWSPHLRQEASRDGGGSLQ
RSQDNTQVSTDVRPIGEKIKENTKTASYTAIIIAGLGVTCVMFFAIFREL
FSSESPNNIYADALRRVVEDPRVQDAIGAPIKGFGETSRRGRRQHVAHSS
YERNGKPHMRMQFYVQGLRNKATVQLESRRSDSGKLEYRYLFVQLDHYPR
TTIILEDNRAFDPTPEPASAGSSFGNLALMSNSRDK*

GM05057.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:50:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15512-PA 240 GF15512-PA 1..240 1..236 1077 84.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24303-PA 236 GG24303-PA 1..236 1..236 1221 95.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11453-PA 243 GH11453-PA 1..243 1..236 859 70.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7382-PA 236 CG7382-PA 1..236 1..236 1212 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21915-PA 234 GI21915-PA 1..234 1..236 885 70.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25905-PA 242 GL25905-PA 1..242 1..236 1022 80.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20311-PA 242 GA20311-PA 1..242 1..236 1015 80.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:51:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18020-PA 236 GM18020-PA 1..236 1..236 1237 97.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22650-PA 236 GD22650-PA 1..236 1..236 1237 97.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17822-PA 273 GJ17822-PA 136..273 97..236 643 86.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15055-PA 238 GK15055-PA 4..238 6..236 819 69.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18998-PA 236 GE18998-PA 1..236 1..236 1226 95.8 Plus