Clone GM05135 Report

Search the DGRC for GM05135

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:51
Well:35
Vector:pBS SK-
Associated Gene/TranscriptCG33713-RA
Protein status:GM05135.pep: gold
Preliminary Size:1462
Sequenced Size:1273

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1704 2001-01-01 Release 2 assignment
CG33071 2001-10-10 Blastp of sequenced clone
CG33071 2003-01-01 Sim4 clustering to Release 3
CG33713 2008-04-29 Release 5.5 accounting
CG33714 2008-08-15 Release 5.9 accounting
CG33713 2008-08-15 Release 5.9 accounting
CG33714 2008-12-18 5.12 accounting
CG33713 2008-12-18 5.12 accounting

Clone Sequence Records

GM05135.complete Sequence

1273 bp (1273 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060903

> GM05135.complete
AGCAAGTTGACGTGAAACAGAAACGCAGCAGTATTTACGCAACGCAACTG
CAAAACCGAGTCCATGGCCACCGCCGCAGCTGTAGCAAAAGTCGGAAAAT
CAGTGCACCGCATTTTCGTGGGCAATCTACCGTGGACAGTGGGCCACCAG
GAGTTGCGTGGCTACTTCCGCGAGTTCGGACGCGTGGTGTCCGCCAACGT
GATCTTCGACAAGCGAACGGGGTGCTCGAAGGGCTACGGTTTCGTTAGCT
TCAACAGTTTGACCGCGCTGGAGAAGATCGAGAACGAGCAGAAGCACATA
CTGGAGGGCAACTACCTAAACATACAGAAATCTTAGATTCCCCACTTTAA
TTGTCATTTAGTTTATAAGCTCAGCAGATTTTTTTTTTTTTTGACATGTC
GGACAGCGATACGGACACCGTGGACGAGCTTTTCCACCTTGCCACCGAGC
ATGTGGCCAAGCAGTCAAACAGCATTGGTTCCGCGGACCTTTTAATATTT
TACGGATACTACAAGCAGGCCACGAATGGCCCCTGCAAGGAGCAAAGTCC
GGGTCTGCTTCAACTGCAGGCCAAGAGCAAGTGGCAGGCTTGGCGCAATC
TGGGAACAATGTCCCAGTCCGCTGCCCGGCAGGCCTACGTCCAGAAGCTG
CAGGAGCTTCAACCCAACTGGCGGTCCCGGCGCAACCCAGGCTGGGTCGT
TCATTCCATTGAGTCGGTCCCACTGGAGGACCAACGTTTGGACAGTGAAA
AGACCCTGTTTGACCACGTGAAGGAGAACAATCTAGACAGGCTGAGGGAA
CTGCTGCAGCCAAGTGACTTGGTTAAGCTGGACGAGCATGGCATGGCGCT
CATCCACTGGGCTACCGATCGCAATGCCGTCGAAATCATACAGTTCCTGG
TGCGGAGTGGGGCCAGTGTAAATCAGCGAGATGCGGAGCAACAGACTCCG
CTGCACTACGCCGCCAGTTGTGGACACTTGGAGGCGCTCCAATGCCTGTT
GGAGCTACACGCCAGCCTGGAGCTACGCGATTCAGATGGACAGACTTGTT
ACGACGTGGCTGACGATGAGCAGATCTGCCAGGTGCTTCAAACGGAACGG
GAACGACTCGCTGGATCCGCGTCCTAATGTCAAAATCTTAAGTTGTTCGG
TGCTCATTTGCTTTAAAAACAGCAAGGTGTTGTGAACCATTGTAAATCTC
CGACAAGTCCCCTGTAAGTTCTTTGGAACTATAATAAACATACATACATA
AATGTAAAAAAAAAAAAAAAAAA

GM05135.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG33714-RB 1257 CG33714-RB 1..1257 1..1257 6285 100 Plus
CG33713-RA 1257 CG33713-RA 1..1257 1..1257 6285 100 Plus
CG33714-RA 1280 CG33714-RA 73..1280 50..1257 6040 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 21183093..21184298 1255..50 6030 100 Minus
chrX 22417052 chrX 21184380..21184429 50..1 250 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:17:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21317934..21319141 1257..50 6040 100 Minus
X 23542271 X 21319223..21319272 50..1 250 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 21303026..21304233 1257..50 6040 100 Minus
X 23527363 X 21304315..21304364 50..1 250 100 Minus
Blast to na_te.dros performed 2019-03-16 09:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1000..1055 405..351 115 69.6 Minus

GM05135.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:47:13 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 21183093..21184297 51..1255 100 <- Minus
chrX 21184380..21184429 1..50 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:03:56 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 1..732 396..1127 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:43:58 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 1..732 396..1127 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:51:35 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RA 1..732 396..1127 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:48 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RB 1..732 396..1127 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:06 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RA 1..732 396..1127 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:26:40 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33714-RB 1..1255 1..1255 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:43:58 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33714-RB 1..1255 1..1255 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:35 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RA 1..1255 1..1255 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:48 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33714-RB 1..1255 1..1255 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:06 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
CG33713-RA 25..1279 1..1255 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:47:13 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
X 21317936..21319140 51..1255 100 <- Minus
X 21319223..21319272 1..50 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:47:13 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
X 21317936..21319140 51..1255 100 <- Minus
X 21319223..21319272 1..50 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:47:13 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
X 21317936..21319140 51..1255 100 <- Minus
X 21319223..21319272 1..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:35 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21190250..21190299 1..50 100   Minus
arm_X 21188963..21190167 51..1255 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:19 Download gff for GM05135.complete
Subject Subject Range Query Range Percent Splice Strand
X 21303028..21304232 51..1255 100 <- Minus
X 21304315..21304364 1..50 100   Minus

GM05135.pep Sequence

Translation from 395 to 1126

> GM05135.pep
MSDSDTDTVDELFHLATEHVAKQSNSIGSADLLIFYGYYKQATNGPCKEQ
SPGLLQLQAKSKWQAWRNLGTMSQSAARQAYVQKLQELQPNWRSRRNPGW
VVHSIESVPLEDQRLDSEKTLFDHVKENNLDRLRELLQPSDLVKLDEHGM
ALIHWATDRNAVEIIQFLVRSGASVNQRDAEQQTPLHYAASCGHLEALQC
LLELHASLELRDSDGQTCYDVADDEQICQVLQTERERLAGSAS*

GM05135.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21844-PA 245 GF21844-PA 1..245 1..243 954 71.8 Plus
Dana\GF23633-PA 746 GF23633-PA 150..238 146..234 177 39.3 Plus
Dana\GF14408-PA 88 GF14408-PA 5..80 13..88 162 44.7 Plus
Dana\GF25010-PA 84 GF25010-PA 4..83 13..92 154 38.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17546-PA 243 GG17546-PA 1..243 1..243 1155 89.7 Plus
Dere\GG13668-PA 751 GG13668-PA 153..241 146..234 173 38.2 Plus
Dere\GG23473-PA 90 GG23473-PA 7..82 13..88 165 42.1 Plus
Dere\GG14405-PA 84 GG14405-PA 4..83 13..92 138 36.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12890-PA 264 GH12890-PA 26..258 13..234 745 60.5 Plus
Dgri\GH11506-PA 90 GH11506-PA 7..82 13..88 169 43.4 Plus
Dgri\GH16810-PA 781 GH16810-PA 152..240 146..234 165 36 Plus
Dgri\GH16810-PA 781 GH16810-PA 263..378 133..239 146 34.5 Plus
Dgri\GH16140-PA 84 GH16140-PA 4..83 13..92 146 37.5 Plus
Dgri\GH17042-PA 84 GH17042-PA 4..83 13..92 137 35 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:38
Subject Length Description Subject Range Query Range Score Percent Strand
anox-PB 243 CG33713-PB 1..243 1..243 1267 100 Plus
anox-PA 243 CG33713-PA 1..243 1..243 1267 100 Plus
MYPT-75D-PB 635 CG6896-PB 118..237 116..234 180 33.3 Plus
MYPT-75D-PD 741 CG6896-PD 118..237 116..234 180 33.3 Plus
MYPT-75D-PC 741 CG6896-PC 118..237 116..234 180 33.3 Plus
MYPT-75D-PA 741 CG6896-PA 118..237 116..234 180 33.3 Plus
Acbp1-PB 90 CG8498-PB 7..82 13..88 162 42.1 Plus
Acbp1-PA 90 CG8498-PA 7..82 13..88 162 42.1 Plus
Ufd4-PA 2727 CG5604-PA 389..514 117..236 150 30.5 Plus
Acbp3-PA 84 CG8628-PA 4..83 13..92 140 37.5 Plus
Acbp3-PB 84 CG8628-PB 4..83 13..92 140 37.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14444-PA 264 GI14444-PA 1..255 1..234 753 56.9 Plus
Dmoj\GI17002-PA 90 GI17002-PA 7..82 13..88 176 44.7 Plus
Dmoj\GI12213-PA 769 GI12213-PA 150..238 146..234 166 36 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16573-PA 61 GL16573-PA 2..55 183..236 180 63 Plus
Dper\GL19321-PA 90 GL19321-PA 7..82 13..88 146 38.2 Plus
Dper\GL25027-PA 84 GL25027-PA 4..83 13..92 137 35 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17261-PA 267 GA17261-PA 28..261 13..236 667 54.3 Plus
Dpse\GA19937-PA 753 GA19937-PA 151..239 146..234 169 38.2 Plus
Dpse\GA21120-PA 90 GA21120-PA 7..82 13..88 145 38.2 Plus
Dpse\GA23591-PA 84 GA23591-PA 4..83 13..92 137 35 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22630-PA 243 GM22630-PA 1..243 1..243 1236 95.9 Plus
Dsec\GM14983-PA 734 GM14983-PA 149..237 146..234 176 39.3 Plus
Dsec\GM13159-PA 90 GM13159-PA 7..82 13..88 165 42.1 Plus
Dsec\GM14821-PA 84 GM14821-PA 4..83 13..92 144 37.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15501-PA 243 GD15501-PA 1..243 1..243 1236 95.9 Plus
Dsim\GD14760-PA 736 GD14760-PA 149..237 146..234 177 39.3 Plus
Dsim\GD22437-PA 90 GD22437-PA 7..82 13..88 165 42.1 Plus
Dsim\GD13994-PA 84 GD13994-PA 4..83 13..92 144 37.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18782-PA 259 GJ18782-PA 11..257 3..242 746 57.5 Plus
Dvir\GJ24270-PA 90 GJ24270-PA 7..82 13..88 166 40.8 Plus
Dvir\GJ11445-PA 779 GJ11445-PA 151..239 146..234 165 36 Plus
Dvir\GJ12299-PA 83 GJ12299-PA 3..82 13..92 144 37.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16311-PA 263 GK16311-PA 19..262 13..243 720 56.1 Plus
Dwil\GK12231-PA 768 GK12231-PA 156..244 146..234 169 37.1 Plus
Dwil\GK23743-PA 90 GK23743-PA 7..82 13..88 156 39.5 Plus
Dwil\GK19286-PA 81 GK19286-PA 1..80 13..92 139 35 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15306-PA 243 GE15306-PA 1..243 1..243 1075 91.4 Plus
Dyak\GE19964-PA 744 GE19964-PA 149..237 146..234 173 38.2 Plus
Dyak\GE11169-PA 90 GE11169-PA 7..82 13..88 161 40.8 Plus
Dyak\GE21595-PA 84 GE21595-PA 4..83 13..92 145 37.5 Plus

GM05135.hyp Sequence

Translation from 395 to 1126

> GM05135.hyp
MSDSDTDTVDELFHLATEHVAKQSNSIGSADLLIFYGYYKQATNGPCKEQ
SPGLLQLQAKSKWQAWRNLGTMSQSAARQAYVQKLQELQPNWRSRRNPGW
VVHSIESVPLEDQRLDSEKTLFDHVKENNLDRLRELLQPSDLVKLDEHGM
ALIHWATDRNAVEIIQFLVRSGASVNQRDAEQQTPLHYAASCGHLEALQC
LLELHASLELRDSDGQTCYDVADDEQICQVLQTERERLAGSAS*

GM05135.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33713-PB 243 CG33713-PB 1..243 1..243 1267 100 Plus
CG33713-PA 243 CG33713-PA 1..243 1..243 1267 100 Plus
MYPT-75D-PB 635 CG6896-PB 118..237 116..234 180 33.3 Plus
MYPT-75D-PD 741 CG6896-PD 118..237 116..234 180 33.3 Plus
MYPT-75D-PC 741 CG6896-PC 118..237 116..234 180 33.3 Plus