Clone GM05221 Report

Search the DGRC for GM05221

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:52
Well:21
Vector:pBS SK-
Associated Gene/TranscriptCG11109-RA
Protein status:GM05221.pep: gold
Preliminary Size:1603
Sequenced Size:1463

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11109 2001-01-01 Release 2 assignment
CG11109 2001-10-10 Blastp of sequenced clone
CG11109 2003-01-01 Sim4 clustering to Release 3
CG11109 2008-04-29 Release 5.5 accounting
CG11109 2008-08-15 Release 5.9 accounting
CG11109 2008-12-18 5.12 accounting

Clone Sequence Records

GM05221.complete Sequence

1463 bp (1463 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060904

> GM05221.complete
CTTGAACTAAGTTAAATGTTAATATGTTTTACCCAAAAACACCATTTTTG
GTGAACCCGTTGCTGGAAGCCGATATCCTTAAAGTGAATGTATGTACTTT
CAATGTGCACAAATACGTATTTACAACAAAAACTGGCTTGCAAATTTTAT
TAACTGTTAATTCCTGGTTTTGTCAAGTCTGCTGCACTTGCTCCGCTGTT
GGAATGGCTGTGCCTTACTCCCAAAGTCACCACTTACAGGGTTAACACTC
TTAGGTGTTCCGTTGACGACTTTCGGAAAAAGTTAGAAGAAAAACTCGCC
ATTCGCTACGGTGTAAAATCTCCAAGGATTTACTGCTTGCCAAACCTACC
CGAGATGTTGTGCATTGATCCGCTGGACTCACAGCTCACCAAAGCTGTGG
CCGACTCCGAGCTCAAGGAGGTAGTGGTTGACACTAACTGCGGAGCTGCA
CTACTGCGAGGCGCCCACATATACGCCCCCGGTGTTTTAGCTATGGAGTC
AAACACTGAGCGGGAGGAACTCGTCAATGTCTACGCAGATCTGGATGGAA
AATGCAAGCGCGGGACGGTCAAGCGGTACGAAAGCCCAAATAAGGTTTTC
CTGGGTACAGGCAAGGTGTTAATGCAGCGGTATCAGCTGTTCAACAACGC
GGAGAAGCCCGCCTCTGGAGTGGCCGTGGAAATGCAGTCCAACGTCAGCG
GAGTGCCCACGCTGGGGGATCTAAGCAGCGAAGACGGCCTGTTGCAAAAC
CTGCCTTCTATTGTTTGCGTCCGTGTCCTGGATCCGCAGCCCGGCGAGCG
CATACTGGACATGTGTGCCGCTCCGGGTAACAAAACAAGCCACATAGCCG
AGTTGATGGGCGATCGGGGATCTGTGGTGGCCCTAGACAATTCGGCCAGT
CGCGTCCGCAGCATGCTGCCCAAATTGGGACACTACAAAAGCATAACGGC
GCATGTTTTTAACTCCACCGAGGCAGTGGCAGCGGACGCTCCATCTGCAC
CCGTGGGAGAATTCACTGGGCCTCCGTTTCCATGTGAAAGCTTTGACCGA
ATCTTGCTCGATGCACCCTGCAGTGGGCTGGGCAACCGGCCACAGTTGTC
CTGCAGCATTAAACAGGTTAAGGTCTTGTCCTCATATCCCCATATTCAGC
GCCGGCTATTTGAACAGGCAGTGCAGCTCGTTCGTCCTGGCGGCATCCTT
GTATATAGCACGTGCACCGTCACCGAGGATGAGTGCGAATGTCTTGTGGC
CTGGGCACTAAGAAAATTTGTCGAGCTGCGGCTAACAGATGCCACTCCCC
GGTGGGGCGGTCCCGGACTTCCGCTTCCCGGTTTCGAGGCATGTAAATCT
CGTCTGTTGCAGCGCTTCGGTCCAAGCGGAGCAAATGCGGACACTGTGGG
CTTTTTTATTGCGAAGTTTCAGAAAATATAAATAAATTCAACTTCAAAAA
AAAAAAAAAAAAA

GM05221.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-RA 1466 CG11109-RA 2..1446 2..1446 7210 99.9 Plus
CG11109-RB 1430 CG11109-RB 142..1410 178..1446 6330 99.9 Plus
CG11109-RB 1430 CG11109-RB 54..141 2..89 440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22861175..22862618 2..1445 7205 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:17:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22872259..22873703 2..1446 7210 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22865359..22866803 2..1446 7210 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 06:17:37 has no hits.

GM05221.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:18:43 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22861174..22862618 1..1445 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:03:59 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 67..1320 178..1431 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:43:59 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 67..1320 178..1431 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:04:47 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 67..1320 178..1431 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:49 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 67..1320 178..1431 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:16:45 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RB 67..1320 178..1431 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:26:41 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 2..1445 2..1445 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:43:59 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 2..1445 2..1445 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:04:47 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 2..1445 2..1445 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:49 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 2..1445 2..1445 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:16:45 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
CG11109-RA 2..1445 2..1445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:43 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22872258..22873702 1..1445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:43 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22872258..22873702 1..1445 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:18:43 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22872258..22873702 1..1445 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:04:47 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22865358..22866802 1..1445 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:20 Download gff for GM05221.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22865358..22866802 1..1445 99   Plus

GM05221.pep Sequence

Translation from 354 to 1430

> GM05221.pep
MLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHIYAPGVLAMESN
TEREELVNVYADLDGKCKRGTVKRYESPNKVFLGTGKVLMQRYQLFNNAE
KPASGVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERI
LDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPKLGHYKSITAH
VFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNRPQLSC
SIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAW
ALRKFVELRLTDATPRWGGPGLPLPGFEACKSRLLQRFGPSGANADTVGF
FIAKFQKI*

GM05221.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11004-PA 441 GF11004-PA 82..417 1..341 1236 70.8 Plus
Dana\GF12515-PA 896 GF12515-PA 429..649 129..358 260 32 Plus
Dana\GF15166-PA 506 GF15166-PA 289..455 142..311 169 28.7 Plus
Dana\GF21493-PA 737 GF21493-PA 154..339 119..303 152 28.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16283-PA 439 GG16283-PA 82..437 1..357 1725 91.3 Plus
Dere\GG20307-PA 897 GG20307-PA 425..645 129..358 258 31.6 Plus
Dere\GG24769-PA 503 GG24769-PA 286..452 142..311 156 27.4 Plus
Dere\EG:EG0007.9-PA 738 GG18560-PA 154..340 119..304 151 27.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16775-PA 449 GH16775-PA 83..444 1..357 1251 67.6 Plus
Dgri\GH21314-PA 843 GH21314-PA 429..649 129..358 262 32 Plus
Dgri\GH18476-PA 433 GH18476-PA 204..373 123..303 158 26.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-PA 358 CG11109-PA 1..358 1..358 1859 100 Plus
CG11109-PB 439 CG11109-PB 82..439 1..358 1859 100 Plus
CG8545-PA 891 CG8545-PA 418..637 129..357 245 31.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13435-PA 443 GI13435-PA 83..438 1..357 1316 69.5 Plus
Dmoj\GI19747-PA 839 GI19747-PA 408..628 129..358 266 32.4 Plus
Dmoj\GI24054-PA 433 GI24054-PA 210..373 129..303 152 25.8 Plus
Dmoj\GI16150-PA 725 GI16150-PA 155..336 119..298 151 28.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24972-PA 438 GL24972-PA 84..437 1..357 1413 75.4 Plus
Dper\GL10113-PA 934 GL10113-PA 425..645 129..358 259 33.6 Plus
Dper\GL23704-PA 433 GL23704-PA 204..373 123..303 152 25.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10764-PA 438 GA10764-PA 84..437 1..357 1415 75.5 Plus
Dpse\GA21153-PA 934 GA21153-PA 425..645 129..358 259 33.6 Plus
Dpse\GA18969-PA 433 GA18969-PA 204..373 123..303 152 25.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22476-PA 440 GM22476-PA 82..438 1..357 1825 96.6 Plus
Dsec\GM21395-PA 865 GM21395-PA 411..578 129..304 241 33.9 Plus
Dsec\GM16796-PA 503 GM16796-PA 286..452 142..311 161 28 Plus
Dsec\GM12703-PA 744 GM12703-PA 154..334 119..298 153 29.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15057-PA 440 GD15057-PA 82..438 1..357 1811 95.8 Plus
Dsim\GD23073-PA 361 GD23073-PA 144..310 142..311 157 27.4 Plus
Dsim\EG:EG0007.9-PA 747 GD16312-PA 154..334 119..298 153 29.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11797-PA 413 GJ11797-PA 107..411 54..357 1112 69.6 Plus
Dvir\GJ18081-PA 840 GJ18081-PA 413..633 129..358 261 32.8 Plus
Dvir\GJ23680-PA 433 GJ23680-PA 204..373 123..303 154 25.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20395-PA 457 GK20395-PA 82..423 1..338 1147 62.5 Plus
Dwil\GK17973-PA 866 GK17973-PA 401..621 129..358 257 32 Plus
Dwil\GK13235-PA 440 GK13235-PA 211..380 123..303 175 27.2 Plus
Dwil\GK24670-PA 505 GK24670-PA 281..446 135..304 163 29.4 Plus
Dwil\GK17644-PA 742 GK17644-PA 154..334 119..298 151 29.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22645-PA 440 GE22645-PA 82..438 1..357 1701 88.8 Plus
Dyak\GE12467-PA 902 GE12467-PA 428..648 129..358 258 31.6 Plus
Dyak\GE17352-PA 504 GE17352-PA 287..453 142..311 163 28 Plus

GM05221.hyp Sequence

Translation from 354 to 1430

> GM05221.hyp
MLCIDPLDSQLTKAVADSELKEVVVDTNCGAALLRGAHIYAPGVLAMESN
TEREELVNVYADLDGKCKRGTVKRYESPNKVFLGTGKVLMQRYQLFNNAE
KPASGVAVEMQSNVSGVPTLGDLSSEDGLLQNLPSIVCVRVLDPQPGERI
LDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPKLGHYKSITAH
VFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNRPQLSC
SIKQVKVLSSYPHIQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAW
ALRKFVELRLTDATPRWGGPGLPLPGFEACKSRLLQRFGPSGANADTVGF
FIAKFQKI*

GM05221.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11109-PA 358 CG11109-PA 1..358 1..358 1859 100 Plus
CG11109-PB 439 CG11109-PB 82..439 1..358 1859 100 Plus
CG8545-PA 891 CG8545-PA 418..637 129..357 245 31.7 Plus