BDGP Sequence Production Resources |
Search the DGRC for GM06015
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 60 |
Well: | 15 |
Vector: | pBS SK- |
Associated Gene/Transcript | HipHop-RA |
Protein status: | GM06015.pep: gold |
Preliminary Size: | 1333 |
Sequenced Size: | 1107 |
Gene | Date | Evidence |
---|---|---|
CG6874 | 2001-01-01 | Release 2 assignment |
CG6874 | 2001-10-10 | Blastp of sequenced clone |
CG6874 | 2003-01-01 | Sim4 clustering to Release 3 |
l(3)neo26 | 2008-04-29 | Release 5.5 accounting |
l(3)neo26 | 2008-08-15 | Release 5.9 accounting |
l(3)neo26 | 2008-12-18 | 5.12 accounting |
1107 bp (1107 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060915
> GM06015.complete TAAGCCCGAGTTGTGGAGAACTAGGTGCATGATCTATTTCAGATGGCCTC CATTGACGAGGGCTCGCGCGTTGAGCGGAGATTCTGCGCAGTCGGCAACC ACACGCTGCGGAAGCCGTATCGCCAACTGAACAACAAATATTTGGTGCGC TTCGCCTGTTTGCTGAACAGCGAAATTCGGGCGGGCAACCTCATCTGCTG CAAGTGCTACACGGACCTGGTGCGACTCTACCGGAAGAAGAACGACAATG CCAAACGGCACAAGATGGCCAGGGAGACTGCCGCGAGCATTACGGACGTC AGCGGCAGTCAGTCATCGTCGCACCAAAGTGCGCCCTCTTTGCATGTCTC TGGCCAAAGTTCCGAATTCGGTGCCTCATACAGTGAGGGGGGCATTGTGA CTCCCGATGAAGAGCTGTGCTCCCACAGAAGCTTAAGTCAAGATTCAGAC AATGTGCCTACTACCAGCGCTGCAGCGATCCAAAAACGCCAGCTTGCGAG GGCAAACCTAATGGTGAAACCATCGCAGAGGCTGAGCTTGGCCCAGACTA CTCCGGATTGTGACGACTACGACCCCAACTCGAATCTCAGTTTGAACGCC GTGAATGGCACGCGACTGCCGCACATTCAGCCGATTCCAAAGAGGCGCCC GACCGTCCTGGACAAGCAGTCCATGGATATTTACTTGATGGGAACCACAG GTGGTTAGGTGATTTTTTAAGTTGTGACTAGAGAACAAGATACATATGCT AGTTGATGCTAGTTTCTAAGTTTCATTTAATTAGATATTTTTGTACGCTA AAATAAAGAAAGACAGAGATGTTAGCTTGGCAGGAGCCACTGAAAGATAG CCGCCATTTGGAGACTTCCTTGAAGTTTATAATTTTAACATGTTTAATGA TATTTACATATATTATATGAATGAAGTACATTTATTTTAAAGGCACCACT GGAAGAGGTTCACAACTTAAGAACTTAAGAAAAATGGAGGCCATAGATAT TTATTTGGCAGGAGCACCAATAGATAGCCGACTTAGTTTATAACTTAATG ATGCCGACATTTTCATGAAATTAAAAAAATAAATAACTTAAAAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
l(3)neo26-RB | 1090 | l(3)neo26-RB | 1..1088 | 1..1095 | 5180 | 98.6 | Plus |
l(3)neo26-RA | 1152 | l(3)neo26-RA | 105..1150 | 43..1095 | 4985 | 98.6 | Plus |
ms(3)K81-RA | 610 | ms(3)K81-RA | 412..496 | 565..649 | 200 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 18814365..18815338 | 1..973 | 4755 | 99.3 | Plus |
3L | 28103327 | 3L | 18815329..18815452 | 972..1095 | 575 | 97.5 | Plus |
3R | 31820162 | 3R | 26617195..26617279 | 565..649 | 200 | 82.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
1360 | 3409 | 1360 1360 3409bp | 2944..3076 | 1007..877 | 113 | 58.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 18810913..18811995 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo26-RB | 1..666 | 43..708 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HipHop-RB | 1..666 | 43..708 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HipHop-RA | 1..666 | 43..708 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo26-RB | 1..666 | 43..708 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HipHop-RA | 1..666 | 43..708 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo26-RB | 1..1082 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HipHop-RB | 1..1082 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HipHop-RB | 95..1176 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)neo26-RB | 1..1082 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HipHop-RB | 95..1176 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18821265..18822346 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18821265..18822346 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18821265..18822346 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 18814365..18815446 | 1..1089 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 18814365..18815446 | 1..1089 | 98 | Plus |
Translation from 42 to 707
> GM06015.pep MASIDEGSRVERRFCAVGNHTLRKPYRQLNNKYLVRFACLLNSEIRAGNL ICCKCYTDLVRLYRKKNDNAKRHKMARETAASITDVSGSQSSSHQSAPSL HVSGQSSEFGASYSEGGIVTPDEELCSHRSLSQDSDNVPTTSAAAIQKRQ LARANLMVKPSQRLSLAQTTPDCDDYDPNSNLSLNAVNGTRLPHIQPIPK RRPTVLDKQSMDIYLMGTTGG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10272-PA | 239 | GF10272-PA | 17..239 | 14..221 | 341 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13678-PA | 225 | GG13678-PA | 1..225 | 1..221 | 903 | 78.6 | Plus |
Dere\ms(3)K81-PA | 184 | GG11507-PA | 1..184 | 4..221 | 398 | 47.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13489-PA | 199 | GH13489-PA | 12..199 | 10..221 | 293 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HipHop-PB | 221 | CG6874-PB | 1..221 | 1..221 | 1145 | 100 | Plus |
HipHop-PA | 221 | CG6874-PA | 1..221 | 1..221 | 1145 | 100 | Plus |
ms(3)K81-PA | 184 | CG14251-PA | 8..184 | 11..221 | 396 | 45.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17239-PA | 191 | GI17239-PA | 149..191 | 180..221 | 165 | 81.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24882-PA | 225 | GL24882-PA | 7..225 | 6..221 | 350 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19922-PA | 225 | GA19922-PA | 7..225 | 6..221 | 352 | 40.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14992-PA | 227 | GM14992-PA | 1..227 | 1..221 | 1027 | 86.8 | Plus |
Dsec\ms(3)K81-PA | 183 | GM10349-PA | 8..183 | 11..221 | 363 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14769-PA | 227 | GD14769-PA | 1..227 | 1..221 | 961 | 86 | Plus |
Dsim\ms(3)K81-PA | 183 | GD21311-PA | 8..183 | 11..221 | 374 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\hiphop-PA | 197 | GJ17998-PA | 14..197 | 12..221 | 267 | 39.1 | Plus |
Translation from 42 to 707
> GM06015.hyp MASIDEGSRVERRFCAVGNHTLRKPYRQLNNKYLVRFACLLNSEIRAGNL ICCKCYTDLVRLYRKKNDNAKRHKMARETAASITDVSGSQSSSHQSAPSL HVSGQSSEFGASYSEGGIVTPDEELCSHRSLSQDSDNVPTTSAAAIQKRQ LARANLMVKPSQRLSLAQTTPDCDDYDPNSNLSLNAVNGTRLPHIQPIPK RRPTVLDKQSMDIYLMGTTGG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HipHop-PB | 221 | CG6874-PB | 1..221 | 1..221 | 1145 | 100 | Plus |
HipHop-PA | 221 | CG6874-PA | 1..221 | 1..221 | 1145 | 100 | Plus |
ms(3)K81-PA | 184 | CG14251-PA | 8..184 | 11..221 | 396 | 45.8 | Plus |