Clone GM06077 Report

Search the DGRC for GM06077

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:60
Well:77
Vector:pBS SK-
Associated Gene/TranscriptCG6073-RA
Protein status:GM06077.pep: gold
Preliminary Size:1752
Sequenced Size:1551

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6073 2001-01-01 Release 2 assignment
CG6073 2001-10-10 Blastp of sequenced clone
CG6073 2003-01-01 Sim4 clustering to Release 3
CG6073 2008-04-29 Release 5.5 accounting
CG6073 2008-08-15 Release 5.9 accounting
CG6073 2008-12-18 5.12 accounting

Clone Sequence Records

GM06077.complete Sequence

1551 bp (1551 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060916

> GM06077.complete
TCAGCTGAAACCAAAACACAGCAGTTAAATCTGAATAAACGCGAAAAATA
CAACTAAAATGGAGACTGTGAAGGAACTGGTTCAATTCATGCAACCGAAT
CAGCGGCTGGACTTAAAGGCAGTAGCCCTAACACATGTTTTAGGATTGAC
TGGCAGCTCAGAGGGCAAATCAGCAATACTTTCACTAGATGAAATGCTAA
TGGCCATTTTTGGACTGACATTCGATGCAAATCAAACGGTGGCCAAGGAT
GCGGTTTTAAGCCTAATAAATTTAACGTCCGAAGAGGAAGCAGCAATTAA
AGTTTTCCAACTGGCGAAACAATTGCAACCGCCATTTGCCATCGTAGAAG
TGGCTGCCAAGGAAATAACCAACGAGCAATCCGATCTGGCTGATCCCTGG
AGCATGGTCTTGAGCAACCTAACGCGAGTGGAATCTCTGGTCCACGAGAT
CCTGGACACGCTAGAAAGAGACGATCACACGCTACCCCGCTTGGCAAAGG
CCTTCGCGCAATTGGACTACAACAAAAAGAAGGCCAAGCTGCATTATCTG
GCGCCCATCTTCTGCAATCTGACCCAGGTTTCTCGGGGCAGGGAACTGTG
CTGCCATCGGAAATACGAGTTGCTGGAGAAACTACTGCCCTTTGCCTCAT
TCGAGGGAAGTGTAGTGCGGCGTGGCGGCACCATTGGCATTCTGAAGAAC
GTTTGCTTCGACACTGTCTACCACGATGTGATCCTAAACGAGCAGAGCAG
TATTCTGGTGGCAATCCTGCAGCCACTGTGCGGTCCAGAAGAGTTCAGCG
ACGAGGACAATGAATTGTTGCCCATCGAACTGCAGTACCTGCCTGAAAGT
AAAACGCGCGAAGAGGATCCCGATTTGCGGAAAATGCTGCTGGAGTGTTT
GCTGCAACTGTGCTCCACACGTCGCAGCCGGGAAATCCTGCGCTCCAGGG
GCGTCTATGAGATCCTGCGGGAGTACCACAAGTGGGAGGCCAAGGTGGGC
AAGGACAGCGACTGTCTGCTGGCCTGCGAGAACGTGGTGGACATTCTGAT
CAAGAAAGAGGAAGAGATTGGCCTGGACAACTATAAAACCGAAGTGGAAG
TGCCTGCAGAGCAGTCAGAAAAATTCGTCCAGGAGGACGCCGCCTATGTG
AAGAGTTTGCTTGATTGAATCAACGTAGCAACCTGGACCGTTTGTAAATA
TGTGTAGTGTGTTAGTAAAAGTCATAGACGATATCGAACTTTCAATATAT
GTATGCAGTTTTTTATTCAGAAATGCTGATAGTTTAGTTTGTAATGCTTC
AAAATGTTGCACTAGAAAAAGTACGCACACATTCAATTGCAGGGTAAACA
GATTCAATTTCGATTTTCAATTCAATTTGATTAGTTCAAGTAGCGTCGTT
ATCTAGTTTATCTAATAATCCATCGCTCTGCCGCCTCAATTGTATATGTA
TAAAGATCTCCTTAAATTCTAGATACATTTGCATTCAAAAATGTTTGGCA
TTCGCCTTGCCATGAAACGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

GM06077.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-RA 1608 CG6073-RA 30..1452 1..1420 6955 99.3 Plus
CG31323-RA 3488 CG31323-RA 3308..3488 1420..1243 805 97.2 Minus
CG6073-RA 1608 CG6073-RA 1455..1563 1416..1524 545 100 Plus
CG31323-RA 3488 CG31323-RA 3197..3305 1524..1416 545 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22010054..22010753 1522..833 3265 98.4 Minus
chr3R 27901430 chr3R 22010807..22011311 835..331 2495 99.6 Minus
chr3R 27901430 chr3R 22011368..22011557 331..142 920 98.9 Minus
chr3R 27901430 chr3R 22011668..22011811 144..1 705 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:17:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26187016..26187717 1524..833 3260 98.3 Minus
3R 32079331 3R 26187771..26188275 835..331 2495 99.6 Minus
3R 32079331 3R 26188332..26188521 331..142 950 100 Minus
3R 32079331 3R 26188632..26188775 144..1 705 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25927958..25928548 1420..833 2840 98.9 Minus
3R 31820162 3R 25928602..25929106 835..331 2495 99.6 Minus
3R 31820162 3R 25929163..25929352 331..142 950 100 Minus
3R 31820162 3R 25929463..25929606 144..1 705 99.3 Minus
3R 31820162 3R 25927847..25927955 1524..1416 545 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:36:21 has no hits.

GM06077.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:37:15 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22010054..22010750 836..1522 98 <- Minus
chr3R 22010807..22011310 332..835 99 <- Minus
chr3R 22011368..22011555 144..331 98 <- Minus
chr3R 22011669..22011811 1..143 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:04:29 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 1..1110 59..1168 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:43:43 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 1..1110 59..1168 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:06:57 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 1..1110 59..1168 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:36 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 1..1110 59..1168 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:42:05 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 1..1110 59..1168 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:26:21 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 30..1561 1..1522 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:43:43 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 30..1561 1..1522 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:06:57 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 33..1564 1..1522 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:36 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 30..1561 1..1522 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:42:05 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
CG6073-RA 33..1564 1..1522 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:15 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26187018..26187714 836..1522 98 <- Minus
3R 26187771..26188274 332..835 99 <- Minus
3R 26188332..26188519 144..331 100 <- Minus
3R 26188633..26188775 1..143 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:15 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26187018..26187714 836..1522 98 <- Minus
3R 26187771..26188274 332..835 99 <- Minus
3R 26188332..26188519 144..331 100 <- Minus
3R 26188633..26188775 1..143 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:37:15 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26187018..26187714 836..1522 98 <- Minus
3R 26187771..26188274 332..835 99 <- Minus
3R 26188332..26188519 144..331 100 <- Minus
3R 26188633..26188775 1..143 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:06:57 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22012740..22013436 836..1522 98 <- Minus
arm_3R 22013493..22013996 332..835 99 <- Minus
arm_3R 22014054..22014241 144..331 100 <- Minus
arm_3R 22014355..22014497 1..143 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:04 Download gff for GM06077.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25927849..25928545 836..1522 98 <- Minus
3R 25928602..25929105 332..835 99 <- Minus
3R 25929163..25929350 144..331 100 <- Minus
3R 25929464..25929606 1..143 99   Minus

GM06077.pep Sequence

Translation from 58 to 1167

> GM06077.pep
METVKELVQFMQPNQRLDLKAVALTHVLGLTGSSEGKSAILSLDEMLMAI
FGLTFDANQTVAKDAVLSLINLTSEEEAAIKVFQLAKQLQPPFAIVEVAA
KEITNEQSDLADPWSMVLSNLTRVESLVHEILDTLERDDHTLPRLAKAFA
QLDYNKKKAKLHYLAPIFCNLTQVSRGRELCCHRKYELLEKLLPFASFEG
SVVRRGGTIGILKNVCFDTVYHDVILNEQSSILVAILQPLCGPEEFSDED
NELLPIELQYLPESKTREEDPDLRKMLLECLLQLCSTRRSREILRSRGVY
EILREYHKWEAKVGKDSDCLLACENVVDILIKKEEEIGLDNYKTEVEVPA
EQSEKFVQEDAAYVKSLLD*

GM06077.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18242-PA 369 GF18242-PA 1..369 1..369 1735 87.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12196-PA 369 GG12196-PA 1..369 1..369 1895 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18136-PA 365 GH18136-PA 1..365 1..369 1594 81.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-PB 369 CG6073-PB 1..369 1..369 1867 100 Plus
CG6073-PA 369 CG6073-PA 1..369 1..369 1867 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22898-PA 365 GI22898-PA 1..365 1..369 1609 82.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22007-PA 337 GL22007-PA 1..337 1..369 1513 79.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19338-PA 368 GA19338-PA 1..368 1..369 1685 85.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10193-PA 369 GM10193-PA 1..369 1..369 1898 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18144-PA 369 GD18144-PA 1..369 1..369 1902 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23311-PA 365 GJ23311-PA 1..365 1..369 1634 83.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13985-PA 365 GK13985-PA 1..365 1..369 1631 82.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10638-PA 369 GE10638-PA 1..369 1..369 1901 97.6 Plus

GM06077.hyp Sequence

Translation from 58 to 1167

> GM06077.hyp
METVKELVQFMQPNQRLDLKAVALTHVLGLTGSSEGKSAILSLDEMLMAI
FGLTFDANQTVAKDAVLSLINLTSEEEAAIKVFQLAKQLQPPFAIVEVAA
KEITNEQSDLADPWSMVLSNLTRVESLVHEILDTLERDDHTLPRLAKAFA
QLDYNKKKAKLHYLAPIFCNLTQVSRGRELCCHRKYELLEKLLPFASFEG
SVVRRGGTIGILKNVCFDTVYHDVILNEQSSILVAILQPLCGPEEFSDED
NELLPIELQYLPESKTREEDPDLRKMLLECLLQLCSTRRSREILRSRGVY
EILREYHKWEAKVGKDSDCLLACENVVDILIKKEEEIGLDNYKTEVEVPA
EQSEKFVQEDAAYVKSLLD*

GM06077.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6073-PB 369 CG6073-PB 1..369 1..369 1867 100 Plus
CG6073-PA 369 CG6073-PA 1..369 1..369 1867 100 Plus