Clone GM06087 Report

Search the DGRC for GM06087

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:60
Well:87
Vector:pBS SK-
Associated Gene/Transcriptsno-RA
Protein status:GM06087.pep: wuzgold
Preliminary Size:1902
Sequenced Size:1688

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1903 2001-01-01 Release 2 assignment
CG1903 2001-10-10 Blastp of sequenced clone
CG1903 2003-01-01 Sim4 clustering to Release 3
sno 2008-04-29 Release 5.5 accounting
sno 2008-08-15 Release 5.9 accounting
sno 2008-12-18 5.12 accounting

Clone Sequence Records

GM06087.complete Sequence

1688 bp (1688 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060918

> GM06087.complete
CTCGTTAGTTGCGATAGTTGGCATGTTACGTGTGTTTTCGGCTTCGTCGC
TTCATTCTCGTCTCGTTCTCGTTTCCTTCCTCCTTTATTCCGATTCCTCG
TTTTGCGTGTATTGCGCGGTACAACGCATACGAACAAATTTATCCGAAGC
GAAATACCGCGTGCAGCAACAAAAGAAAAACACACTCAACAACAACAACA
CACACGCATGCACACACGCATGCAGTCATTATCGCAACACCAATAACAAC
AGGAAGAACAACAACAACAAAAACATTTCTAACGCGCTGAAAATTGCGGA
GTCCAGCCTTTTATATTTGCTGCATTTGCTATCTAACTTGCCGCACAATT
GTTCTGTTCCGTTGACAGCATCAAAAACGCATTGTTAAAAAGAAATTAAT
ATATAAATTTTAAACAAAACACAAAAAAAAACCAAGAAAAGAACGAAAAA
CGCGTGGGTGCGCGGTCTGTTGATTTTTTTTTTGTGGTTAACAACAACAA
CAAGAACCATCGGAGGGACGAACATCAAGAACAACCACCGTTAGCAGTAA
GCAGGAGAATCAAAATGACATCGAAAAAACGAAAAACACTGTTGGATGCC
GATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTCGA
CGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGATT
TGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCGTG
GCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTTGT
TGGCAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAATA
ACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCATC
AGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAACAG
CCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGGTG
CTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGATA
CCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATGCC
AAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTTAAATATTTAAAT
AATATCAATTAAGCACAGCACACACAGACGAAGCGAACCAACTGAATAAT
ATTTAACAGCAGTGTTGCCAATTCATTAATCGAATTTACCAAAAAAAAAA
TGTGCGACAGTATGTTAACTATATTCTTACGTTTAAAATTCCATATGTTA
AGGAAGCTTGGCATTTTAGTTGATCTTACTTAATTTCAAAATGATATCTA
AAATCTAAAAACAATAGAATATCCTAAGTTTGCCTAAGACAATAATAATG
TGATGGTCATATGAGCCGAATTTCTGATAAGTGTACTAAAAAACTTAAAG
TTGGCAGCACTGGCTTCAAATAACTAGCTGTTGATCACAATAATTAATGA
TGCTTGTGTTGTTCTCTTTCTTTATTTCTCTCTATTTCTCCACTCAACAC
TATATGTATATATATATATATATATATATATTGCTTGTCTTGATTTAAAC
CCGATTTATAAATACCGCCAACCCATATATATATTATATATAAAAATATA
TATAATTTTCCCAATCCCAAAAAAAAAAAAAAAAAAAA

GM06087.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
sno-RA 1694 sno-RA 29..1690 1..1669 8095 99.1 Plus
sno-RD 6847 sno-RD 1..1126 1..1126 5630 100 Plus
sno-RB 6109 sno-RB 117..1242 1..1126 5630 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13094045..13095028 1668..685 4875 99.7 Minus
chrX 22417052 chrX 13101976..13102542 567..1 2835 100 Minus
chrX 22417052 chrX 13097585..13097706 688..567 610 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:18:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13203174..13204151 1669..685 4665 98.5 Minus
X 23542271 X 13211100..13211666 567..1 2835 100 Minus
X 23542271 X 13206709..13206830 688..567 610 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13219198..13219764 567..1 2835 100 Minus
X 23527363 X 13211762..13212249 1172..685 2440 100 Minus
X 23527363 X 13211272..13211761 1669..1180 2330 98.3 Minus
X 23527363 X 13214807..13214928 688..567 610 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:50:51 has no hits.

GM06087.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:51:45 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13097588..13097705 568..685 100 <- Minus
chrX 13094840..13095027 686..873 100 <- Minus
chrX 13101976..13102267 276..567 89 == Minus
chrX 13102345..13102542 1..198 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:04:32 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..576 565..1140 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:43:46 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..576 565..1140 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:05 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..570 565..1136 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:38 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..576 565..1140 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:59 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..570 565..1136 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:26:25 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..1661 1..1668 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:43:46 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..1661 1..1668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:05 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 9..1142 1..1136 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:38 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 1..1661 1..1668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:59 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
sno-RA 9..1142 1..1136 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:45 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
X 13206712..13206829 568..685 100 <- Minus
X 13203175..13204150 686..1668 98 <- Minus
X 13211100..13211666 1..567 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:45 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
X 13206712..13206829 568..685 100 <- Minus
X 13203175..13204150 686..1668 98 <- Minus
X 13211100..13211666 1..567 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:45 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
X 13206712..13206829 568..685 100 <- Minus
X 13203175..13204150 686..1668 98 <- Minus
X 13211100..13211666 1..567 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:05 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13097208..13098183 686..1668 98 <- Minus
arm_X 13100745..13100862 568..685 100 <- Minus
arm_X 13105133..13105699 1..567 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:06 Download gff for GM06087.complete
Subject Subject Range Query Range Percent Splice Strand
X 13211273..13212248 686..1668 98 <- Minus
X 13214810..13214927 568..685 100 <- Minus
X 13219198..13219764 1..567 100   Minus

GM06087.hyp Sequence

Translation from 564 to 1139

> GM06087.hyp
MTSKKRKTLLDADDDNDNFDEDDSGSDFDDDEDPDQIEVPGGGRDLNTAV
TYAQNIRSGVGVAPKGGIPIPISGAKIVVGNNKIKPISLLRINNNNNNIV
TSVNNRNNNNIISTNGSSNNNNNSINNNSQIIKTTTVTTTPTTVGATPTV
GGVALGGKLTVIPIAGRNVALDNNLSNMPKKLNNMVTGKCI*

GM06087.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
sno-PA 1547 CG44436-PA 1..187 1..187 961 100 Plus
sno-PB 1653 CG44436-PB 1..187 1..187 961 100 Plus

GM06087.pep Sequence

Translation from 564 to 1139

> GM06087.pep
MTSKKRKTLLDADDDNDNFDEDDSGSDFDDDEDPDQIEVPGGGRDLNTAV
TYAQNIRSGVGVAPKGGIPIPISGAKIVVGNNKIKPISLLRINNNNNNIV
TSVNNRNNNNIISTNGSSNNNNNSINNNSQIIKTTTVTTTPTTVGATPTV
GGVALGGKLTVIPIAGRNVALDNNLSNMPKKLNNMVTGKCI*

GM06087.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20958-PA 1565 GF20958-PA 10..189 1..187 351 66.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19514-PA 1882 GG19514-PA 2..190 1..188 421 79.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
sno-PA 1547 CG44436-PA 1..187 1..187 961 100 Plus
sno-PB 1653 CG44436-PB 1..187 1..187 961 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15866-PA 1354 GL15866-PA 29..138 2..104 183 61.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23541-PA 1595 GA23541-PA 10..180 2..182 211 48.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11504-PA 417 GM11504-PA 1..185 1..187 457 87.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:50:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15897-PA 1773 GD15897-PA 1..191 1..188 456 78.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16502-PA 1747 GK16502-PA 1..74 1..71 163 74.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16169-PA 1564 GE16169-PA 4..190 2..187 468 79.1 Plus