GM06087.complete Sequence
1688 bp (1688 high quality bases) assembled on 2001-10-10
GenBank Submission: AY060918
> GM06087.complete
CTCGTTAGTTGCGATAGTTGGCATGTTACGTGTGTTTTCGGCTTCGTCGC
TTCATTCTCGTCTCGTTCTCGTTTCCTTCCTCCTTTATTCCGATTCCTCG
TTTTGCGTGTATTGCGCGGTACAACGCATACGAACAAATTTATCCGAAGC
GAAATACCGCGTGCAGCAACAAAAGAAAAACACACTCAACAACAACAACA
CACACGCATGCACACACGCATGCAGTCATTATCGCAACACCAATAACAAC
AGGAAGAACAACAACAACAAAAACATTTCTAACGCGCTGAAAATTGCGGA
GTCCAGCCTTTTATATTTGCTGCATTTGCTATCTAACTTGCCGCACAATT
GTTCTGTTCCGTTGACAGCATCAAAAACGCATTGTTAAAAAGAAATTAAT
ATATAAATTTTAAACAAAACACAAAAAAAAACCAAGAAAAGAACGAAAAA
CGCGTGGGTGCGCGGTCTGTTGATTTTTTTTTTGTGGTTAACAACAACAA
CAAGAACCATCGGAGGGACGAACATCAAGAACAACCACCGTTAGCAGTAA
GCAGGAGAATCAAAATGACATCGAAAAAACGAAAAACACTGTTGGATGCC
GATGACGACAATGACAATTTTGATGAAGACGATTCGGGCTCCGATTTCGA
CGATGACGAGGATCCAGATCAAATAGAAGTGCCCGGTGGAGGTCGCGATT
TGAACACAGCCGTTACGTACGCCCAAAATATCCGTAGCGGAGTGGGCGTG
GCGCCCAAAGGCGGTATACCCATACCCATAAGTGGGGCGAAAATTGTTGT
TGGCAATAATAAAATCAAGCCAATATCGTTGTTGCGCATTAACAACAATA
ACAACAATATAGTCACCAGTGTTAACAATAGAAACAACAACAATATCATC
AGCACCAACGGCAGCAGCAATAACAACAACAATAGCATCAACAACAACAG
CCAGATAATAAAAACAACAACAGTAACAACAACACCAACCACTGTGGGTG
CTACGCCAACAGTTGGAGGCGTGGCACTGGGCGGAAAGCTAACAGTGATA
CCGATAGCAGGGAGAAACGTAGCCCTAGATAATAATTTAAGCAATATGCC
AAAGAAACTGAATAACATGGTAACGGGTAAGTGCATTTAAATATTTAAAT
AATATCAATTAAGCACAGCACACACAGACGAAGCGAACCAACTGAATAAT
ATTTAACAGCAGTGTTGCCAATTCATTAATCGAATTTACCAAAAAAAAAA
TGTGCGACAGTATGTTAACTATATTCTTACGTTTAAAATTCCATATGTTA
AGGAAGCTTGGCATTTTAGTTGATCTTACTTAATTTCAAAATGATATCTA
AAATCTAAAAACAATAGAATATCCTAAGTTTGCCTAAGACAATAATAATG
TGATGGTCATATGAGCCGAATTTCTGATAAGTGTACTAAAAAACTTAAAG
TTGGCAGCACTGGCTTCAAATAACTAGCTGTTGATCACAATAATTAATGA
TGCTTGTGTTGTTCTCTTTCTTTATTTCTCTCTATTTCTCCACTCAACAC
TATATGTATATATATATATATATATATATATTGCTTGTCTTGATTTAAAC
CCGATTTATAAATACCGCCAACCCATATATATATTATATATAAAAATATA
TATAATTTTCCCAATCCCAAAAAAAAAAAAAAAAAAAA
GM06087.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-RA | 1694 | sno-RA | 29..1690 | 1..1669 | 8095 | 99.1 | Plus |
sno-RD | 6847 | sno-RD | 1..1126 | 1..1126 | 5630 | 100 | Plus |
sno-RB | 6109 | sno-RB | 117..1242 | 1..1126 | 5630 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 13094045..13095028 | 1668..685 | 4875 | 99.7 | Minus |
chrX | 22417052 | chrX | 13101976..13102542 | 567..1 | 2835 | 100 | Minus |
chrX | 22417052 | chrX | 13097585..13097706 | 688..567 | 610 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:18:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13203174..13204151 | 1669..685 | 4665 | 98.5 | Minus |
X | 23542271 | X | 13211100..13211666 | 567..1 | 2835 | 100 | Minus |
X | 23542271 | X | 13206709..13206830 | 688..567 | 610 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 13219198..13219764 | 567..1 | 2835 | 100 | Minus |
X | 23527363 | X | 13211762..13212249 | 1172..685 | 2440 | 100 | Minus |
X | 23527363 | X | 13211272..13211761 | 1669..1180 | 2330 | 98.3 | Minus |
X | 23527363 | X | 13214807..13214928 | 688..567 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 23:50:51 has no hits.
GM06087.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:51:45 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 13097588..13097705 | 568..685 | 100 | <- | Minus |
chrX | 13094840..13095027 | 686..873 | 100 | <- | Minus |
chrX | 13101976..13102267 | 276..567 | 89 | == | Minus |
chrX | 13102345..13102542 | 1..198 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:04:32 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..576 | 565..1140 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:43:46 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..576 | 565..1140 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:05 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..570 | 565..1136 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:38 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..576 | 565..1140 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:59 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..570 | 565..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:26:25 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..1661 | 1..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:43:46 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..1661 | 1..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:05 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 9..1142 | 1..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:38 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 1..1661 | 1..1668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:59 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sno-RA | 9..1142 | 1..1136 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:45 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13206712..13206829 | 568..685 | 100 | <- | Minus |
X | 13203175..13204150 | 686..1668 | 98 | <- | Minus |
X | 13211100..13211666 | 1..567 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:45 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13206712..13206829 | 568..685 | 100 | <- | Minus |
X | 13203175..13204150 | 686..1668 | 98 | <- | Minus |
X | 13211100..13211666 | 1..567 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:51:45 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13206712..13206829 | 568..685 | 100 | <- | Minus |
X | 13203175..13204150 | 686..1668 | 98 | <- | Minus |
X | 13211100..13211666 | 1..567 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:05 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 13097208..13098183 | 686..1668 | 98 | <- | Minus |
arm_X | 13100745..13100862 | 568..685 | 100 | <- | Minus |
arm_X | 13105133..13105699 | 1..567 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:49:06 Download gff for
GM06087.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13211273..13212248 | 686..1668 | 98 | <- | Minus |
X | 13214810..13214927 | 568..685 | 100 | <- | Minus |
X | 13219198..13219764 | 1..567 | 100 | | Minus |
GM06087.hyp Sequence
Translation from 564 to 1139
> GM06087.hyp
MTSKKRKTLLDADDDNDNFDEDDSGSDFDDDEDPDQIEVPGGGRDLNTAV
TYAQNIRSGVGVAPKGGIPIPISGAKIVVGNNKIKPISLLRINNNNNNIV
TSVNNRNNNNIISTNGSSNNNNNSINNNSQIIKTTTVTTTPTTVGATPTV
GGVALGGKLTVIPIAGRNVALDNNLSNMPKKLNNMVTGKCI*
GM06087.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-PA | 1547 | CG44436-PA | 1..187 | 1..187 | 961 | 100 | Plus |
sno-PB | 1653 | CG44436-PB | 1..187 | 1..187 | 961 | 100 | Plus |
GM06087.pep Sequence
Translation from 564 to 1139
> GM06087.pep
MTSKKRKTLLDADDDNDNFDEDDSGSDFDDDEDPDQIEVPGGGRDLNTAV
TYAQNIRSGVGVAPKGGIPIPISGAKIVVGNNKIKPISLLRINNNNNNIV
TSVNNRNNNNIISTNGSSNNNNNSINNNSQIIKTTTVTTTPTTVGATPTV
GGVALGGKLTVIPIAGRNVALDNNLSNMPKKLNNMVTGKCI*
GM06087.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF20958-PA | 1565 | GF20958-PA | 10..189 | 1..187 | 351 | 66.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG19514-PA | 1882 | GG19514-PA | 2..190 | 1..188 | 421 | 79.4 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sno-PA | 1547 | CG44436-PA | 1..187 | 1..187 | 961 | 100 | Plus |
sno-PB | 1653 | CG44436-PB | 1..187 | 1..187 | 961 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:50:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL15866-PA | 1354 | GL15866-PA | 29..138 | 2..104 | 183 | 61.8 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA23541-PA | 1595 | GA23541-PA | 10..180 | 2..182 | 211 | 48.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM11504-PA | 417 | GM11504-PA | 1..185 | 1..187 | 457 | 87.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:50:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD15897-PA | 1773 | GD15897-PA | 1..191 | 1..188 | 456 | 78.5 | Plus |
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:50:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dwil\GK16502-PA | 1747 | GK16502-PA | 1..74 | 1..71 | 163 | 74.3 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE16169-PA | 1564 | GE16169-PA | 4..190 | 2..187 | 468 | 79.1 | Plus |