Clone GM06145 Report

Search the DGRC for GM06145

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:61
Well:45
Vector:pBS SK-
Associated Gene/TranscriptSppL-RD
Protein status:GM06145.pep: gold
Preliminary Size:2071
Sequenced Size:2111

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17370 2002-11-22 Blastp of sequenced clone
CG17370 2003-01-01 Sim4 clustering to Release 3
CG17370 2008-04-29 Release 5.5 accounting
CG17370 2008-08-15 Release 5.9 accounting
CG17370 2008-12-18 5.12 accounting

Clone Sequence Records

GM06145.complete Sequence

2111 bp (2111 high quality bases) assembled on 2002-11-22

GenBank Submission: BT003288

> GM06145.complete
AAAGCGTGAAATGTTTAATTCGTTGTTGTTTCTCCTCCGCAATAGTTACT
AATAGAAACAAATGCAAAATGGCTGTCTAACGTTTAAGTGCAGCGACCGC
CGAAGATCGTGGAAATATGCATGAAAAGCGGCTCGCAGGCAAATGAAAGG
CGCGTGAAAATGTAGCAGACACCTTTTTATCGCGAAAACGAACATCGGTG
CAAAGGGAAAAACAAAAACCAAGGAAAATACAGCCAAACGCGAATGTGAA
TGTGAAGGCAAAAGTGTGTATGGCGTTCTAATTTGCTTTCATTACCTAAT
TCGTGAGGCGCGTGAAAGTTGACCCCAAGGTTTCCGCGCTCGACTTAAGG
CGACATCGTGGAAAATAAACCTTGGGAGTGAGTGTGTGCTCCGAATAGCC
TAATCGCAGTTGTCCAAATAACCTGAAGAAGGTAAAAAAGTATACGGGGT
TACGTGCGATAAGTTTGGATTGAAGCGGTGCAGCTGACATAGGAACGCGA
TAAACCCAGCGCAGGACGACCGATAAGCGAAGAAGCCAGCCGACTGGCGA
CTACAAGTGATATCTGAAACTATATCTGCGATATAGATTGAAGTCGCATC
CGGAGGAACCGGAGCGAGCATGTCGCACGGTGGAGCCGGTGGCGGTCTGG
GAGCTCAAACTGTTGGAGCCGGCCAACTTGGAGGCGGTGCAGCGGCAGCT
GGCGGTGGAGAATACCGCGAACTCCACTGGACGGTCTCAAGCGTAATGGA
CTCGTCTCGGGTCTCCACCTGCCTCATATCAATGCTGCTGATAGTCTACG
GCAGCTTTCGCTCCTTAAACATCGAGCAGGAGGCCCGCGAGCGGGAGCAG
AAGAAGCGAAATGAATCGATGACCAATCTTCTTACCGGCGAGCCCGTCGA
GAAGGAACCAAATCTGTATTTCACAGCGGATAAATTCGCCACTCTGGACA
CGATGCATGCCCTCTGTTTGCCTCTCGGAGCTTCCATCTCACTGCTCATC
ATGTTCTTCTTCTTCGACTCGATGCAGCTGCTCTTCGCCGTCTGCACAGC
GATTATAGCCACCGTGGCGCTGGCCTTTCTGCTGCTGCCCATGTGCCAGT
ACATCATCAGGCCATGCACAGATGGAAAGCGATTCTCCTTCGGATTCTGC
GGTCGCTTCACAGCCGCGGAGCTCTTCAGCTTTACGCTTTCGGTATCGAT
TGTGTGCATATGGGTGCTCACTGGCCACTGGCTGCTAATGGATGCAATGG
GCATGGGCCTGTGTGTGGCATTCATAGCGTTTGTGCGTCTGCCCAGCTTG
AAGGTGTCCACGCTGCTGTTGACCGGCCTGCTCATCTACGACGTCTTCTG
GGTATTCCTCTCCTCGTACATCTTCAGCACTAACGTGATGGTCAAGGTGG
CGACGCGACCCGCCGATAATCCCGTGGGCATCGTGGCCAGAAAGTTGCAT
CTGGGTGGCATTGTGCGGGACACACCAAAGCTGAATCTGCCCGGAAAGCT
TGTTTTTCCCAGCCTGCACAATACCGGTCACTTCTCTATGCTGGGCCTGG
GTGATGTGGTGATGCCGGGCCTGTTGCTCTGCTTCGTCTTGCGGTATGAT
GCGTACAAGAAGGCGCAGGGCGTCACATCGGATCCCACATTGTCACCGCC
CAGAGGAGTTGGCTCCCGGTTGACATACTTTCATTGTTCCTTATTGGGTT
ATTTCTTGGGCCTGCTAACGGCGACGGTCAGCTCCGAGGTCTTTAAGGCG
GCCCAGCCGGCGCTGCTGTATCTAGTGCCCTTTACGTTATTGCCGCTCTT
GCTGATGGCCTATCTGAAGGGCGACCTGCGGCGCATGTGGAGCGAGCCGT
TTATCGCGCAACAACCATCAAAACAACTGGAAGTCTGAGTGTACTCTATC
TAAAAGCAAAGAAAAACAAAAAACCAACAGCATACAATGTGAAGAACACA
CACACATAAGATCTAATACTAACGTTTGTCTCTTAAATAACGTATTGAGT
ATGTATTTTTTAACTCAACTTAACTAAGTTTCGTTTTAAGTTAGGTGATC
CTCGTTTTCATAGTGAAATAAAAGCAAAAACCGAGTAAAAAAAAAAAAAA
AAAAAAAAAAA

GM06145.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17370.f 2847 CG17370.f 30..2117 1..2088 10305 99.5 Plus
CG17370-RD 2371 CG17370-RD 30..2117 1..2088 10305 99.5 Plus
CG17370-RB 2225 CG17370-RB 941..2102 927..2088 5735 99.5 Plus
CG17370-RB 2225 CG17370-RB 30..940 1..911 4495 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21709532..21709986 1244..1698 2260 99.8 Plus
chr3R 27901430 chr3R 21708346..21708795 462..911 2220 99.6 Plus
chr3R 27901430 chr3R 21710263..21710531 1818..2086 1345 100 Plus
chr3R 27901430 chr3R 21704986..21705246 1..262 1260 99.6 Plus
chr3R 27901430 chr3R 21708084..21708285 263..463 960 99.5 Plus
chr3R 27901430 chr3R 21709273..21709464 1053..1244 960 100 Plus
chr3R 27901430 chr3R 21708846..21708986 912..1052 630 96.5 Plus
chr3R 27901430 chr3R 21710077..21710199 1698..1820 615 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:18:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25886565..25887019 1244..1698 2230 99.3 Plus
3R 32079331 3R 25885380..25885829 462..911 2190 99.1 Plus
3R 32079331 3R 25887296..25887566 1818..2088 1355 100 Plus
3R 32079331 3R 25882014..25882275 1..262 1310 100 Plus
3R 32079331 3R 25885119..25885319 263..463 1005 100 Plus
3R 32079331 3R 25886307..25886498 1053..1244 960 100 Plus
3R 32079331 3R 25885880..25886020 912..1052 690 99.3 Plus
3R 32079331 3R 25887110..25887232 1698..1820 600 99.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25627396..25627850 1244..1698 2230 99.3 Plus
3R 31820162 3R 25626211..25626660 462..911 2190 99.1 Plus
3R 31820162 3R 25628127..25628397 1818..2088 1355 100 Plus
3R 31820162 3R 25622845..25623106 1..262 1310 100 Plus
3R 31820162 3R 25625950..25626150 263..463 1005 100 Plus
3R 31820162 3R 25627138..25627329 1053..1244 960 100 Plus
3R 31820162 3R 25626711..25626851 912..1052 690 99.2 Plus
3R 31820162 3R 25627941..25628063 1698..1820 600 99.1 Plus
Blast to na_te.dros performed 2019-03-15 17:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 1232..1328 1860..1957 127 60.2 Plus

GM06145.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:44:26 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21704986..21705246 1..262 99 -> Plus
chr3R 21708084..21708285 263..463 99 -> Plus
chr3R 21708348..21708795 464..911 99 -> Plus
chr3R 21708846..21708986 912..1052 96 -> Plus
chr3R 21709273..21709464 1053..1244 100 -> Plus
chr3R 21709533..21709986 1245..1698 99 -> Plus
chr3R 21710078..21710198 1699..1819 100 -> Plus
chr3R 21710265..21710531 1820..2086 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:04:33 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
CG17370-RC 1..289 620..908 99 == Plus
CG17370-RC 290..1254 924..1888 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:03:19 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
CG17370-RE 1..1269 620..1888 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:44:34 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
SppL-RD 1..1269 620..1888 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:35 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
CG17370-RC 1..289 620..908 99 == Plus
CG17370-RC 290..1254 924..1888 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:45:21 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
SppL-RD 1..1269 620..1888 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:21:52 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
CG17370-RA 287..736 456..908 98 == Plus
CG17370-RA 737..1899 924..2086 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:03:19 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
CG17370-RD 30..2115 1..2086 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:44:34 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
SppL-RD 31..2116 1..2086 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:35 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
CG17370-RC 41..492 455..908 98 == Plus
CG17370-RC 493..1655 924..2086 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:45:21 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
SppL-RD 31..2116 1..2086 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:26 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25885382..25885829 464..911 99 -> Plus
3R 25885880..25886020 912..1052 99 -> Plus
3R 25886307..25886498 1053..1244 100 -> Plus
3R 25882014..25882275 1..262 100 -> Plus
3R 25885119..25885319 263..463 100 -> Plus
3R 25886566..25887019 1245..1698 99 -> Plus
3R 25887111..25887231 1699..1819 99 -> Plus
3R 25887298..25887564 1820..2086 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:26 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25885382..25885829 464..911 99 -> Plus
3R 25885880..25886020 912..1052 99 -> Plus
3R 25886307..25886498 1053..1244 100 -> Plus
3R 25882014..25882275 1..262 100 -> Plus
3R 25885119..25885319 263..463 100 -> Plus
3R 25886566..25887019 1245..1698 99 -> Plus
3R 25887111..25887231 1699..1819 99 -> Plus
3R 25887298..25887564 1820..2086 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:44:26 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25885382..25885829 464..911 99 -> Plus
3R 25885880..25886020 912..1052 99 -> Plus
3R 25886307..25886498 1053..1244 100 -> Plus
3R 25882014..25882275 1..262 100 -> Plus
3R 25885119..25885319 263..463 100 -> Plus
3R 25886566..25887019 1245..1698 99 -> Plus
3R 25887111..25887231 1699..1819 99 -> Plus
3R 25887298..25887564 1820..2086 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:44:34 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21707736..21707997 1..262 100 -> Plus
arm_3R 21710841..21711041 263..463 100 -> Plus
arm_3R 21711104..21711551 464..911 99 -> Plus
arm_3R 21711602..21711742 912..1052 99 -> Plus
arm_3R 21712029..21712220 1053..1244 100 -> Plus
arm_3R 21712288..21712741 1245..1698 99 -> Plus
arm_3R 21712833..21712953 1699..1819 99 -> Plus
arm_3R 21713020..21713286 1820..2086 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:46 Download gff for GM06145.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25627138..25627329 1053..1244 100 -> Plus
3R 25626711..25626851 912..1052 99 -> Plus
3R 25622845..25623106 1..262 100 -> Plus
3R 25625950..25626150 263..463 100 -> Plus
3R 25626213..25626660 464..911 99 -> Plus
3R 25627397..25627850 1245..1698 99 -> Plus
3R 25627942..25628062 1699..1819 99 -> Plus
3R 25628129..25628395 1820..2086 100   Plus

GM06145.pep Sequence

Translation from 619 to 1887

> GM06145.pep
MSHGGAGGGLGAQTVGAGQLGGGAAAAGGGEYRELHWTVSSVMDSSRVST
CLISMLLIVYGSFRSLNIEQEAREREQKKRNESMTNLLTGEPVEKEPNLY
FTADKFATLDTMHALCLPLGASISLLIMFFFFDSMQLLFAVCTAIIATVA
LAFLLLPMCQYIIRPCTDGKRFSFGFCGRFTAAELFSFTLSVSIVCIWVL
TGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFLSSY
IFSTNVMVKVATRPADNPVGIVARKLHLGGIVRDTPKLNLPGKLVFPSLH
NTGHFSMLGLGDVVMPGLLLCFVLRYDAYKKAQGVTSDPTLSPPRGVGSR
LTYFHCSLLGYFLGLLTATVSSEVFKAAQPALLYLVPFTLLPLLLMAYLK
GDLRRMWSEPFIAQQPSKQLEV*

GM06145.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:39:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16778-PA 435 GF16778-PA 49..435 31..422 1947 96.2 Plus
Dana\GF24718-PA 389 GF24718-PA 46..354 49..408 325 29.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11430-PA 417 GG11430-PA 1..417 1..422 2171 98.6 Plus
Dere\GG24644-PA 389 GG24644-PA 40..354 43..408 325 27.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:39:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22306-PA 424 GH22306-PA 36..424 29..422 1945 95.4 Plus
Dgri\GH10510-PA 390 GH10510-PA 47..355 49..408 328 28.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
SppL-PE 422 CG17370-PE 1..422 1..422 2175 100 Plus
SppL-PD 422 CG17370-PD 1..422 1..422 2175 100 Plus
SppL-PF 417 CG17370-PF 1..417 1..422 2127 98.6 Plus
SppL-PC 417 CG17370-PC 1..417 1..422 2127 98.6 Plus
SppL-PB 417 CG17370-PB 1..417 1..422 2127 98.6 Plus
SppL-PA 417 CG17370-PA 1..417 1..422 2127 98.6 Plus
Spp-PA 389 CG11840-PA 46..366 49..419 329 27.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:39:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22975-PA 422 GI22975-PA 35..422 30..422 1933 95.2 Plus
Dmoj\GI18028-PA 391 GI18028-PA 47..355 49..408 326 28 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21795-PA 434 GL21795-PA 46..434 29..422 1922 94.7 Plus
Dper\GL19257-PA 391 GL19257-PA 48..356 49..408 319 27.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14486-PA 432 GA14486-PA 44..432 29..422 1922 94.7 Plus
Dpse\GA11227-PA 391 GA11227-PA 48..356 49..408 319 27.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10271-PA 417 GM10271-PA 1..417 1..422 2171 98.6 Plus
Dsec\GM16661-PA 376 GM16661-PA 40..341 43..408 314 28.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21240-PA 417 GD21240-PA 1..417 1..422 2171 98.6 Plus
Dsim\GD22952-PA 374 GD22952-PA 46..339 49..408 322 27.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22735-PA 280 GJ22735-PA 41..280 31..275 1217 95.1 Plus
Dvir\GJ19708-PA 398 GJ19708-PA 51..359 49..408 324 27.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12863-PA 432 GK12863-PA 46..432 31..422 1932 95.7 Plus
Dwil\GK14664-PA 406 GK14664-PA 51..362 49..408 308 28 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23625-PA 417 GE23625-PA 1..417 1..422 2171 98.6 Plus
Dyak\GE16062-PA 389 GE16062-PA 40..354 43..408 324 28.6 Plus

GM06145.hyp Sequence

Translation from 619 to 1887

> GM06145.hyp
MSHGGAGGGLGAQTVGAGQLGGGAAAAGGGEYRELHWTVSSVMDSSRVST
CLISMLLIVYGSFRSLNIEQEAREREQKKRNESMTNLLTGEPVEKEPNLY
FTADKFATLDTMHALCLPLGASISLLIMFFFFDSMQLLFAVCTAIIATVA
LAFLLLPMCQYIIRPCTDGKRFSFGFCGRFTAAELFSFTLSVSIVCIWVL
TGHWLLMDAMGMGLCVAFIAFVRLPSLKVSTLLLTGLLIYDVFWVFLSSY
IFSTNVMVKVATRPADNPVGIVARKLHLGGIVRDTPKLNLPGKLVFPSLH
NTGHFSMLGLGDVVMPGLLLCFVLRYDAYKKAQGVTSDPTLSPPRGVGSR
LTYFHCSLLGYFLGLLTATVSSEVFKAAQPALLYLVPFTLLPLLLMAYLK
GDLRRMWSEPFIAQQPSKQLEV*

GM06145.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
SppL-PE 422 CG17370-PE 1..422 1..422 2175 100 Plus
SppL-PD 422 CG17370-PD 1..422 1..422 2175 100 Plus
SppL-PF 417 CG17370-PF 1..417 1..422 2127 98.6 Plus
SppL-PC 417 CG17370-PC 1..417 1..422 2127 98.6 Plus
SppL-PB 417 CG17370-PB 1..417 1..422 2127 98.6 Plus