Clone GM06581 Report

Search the DGRC for GM06581

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:65
Well:81
Vector:pBS SK-
Associated Gene/TranscriptFpps-RA
Protein status:GM06581.pep: gold
Preliminary Size:1472
Sequenced Size:1482

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12389 2001-01-01 Release 2 assignment
CG12389 2002-12-11 Blastp of sequenced clone
CG12389 2003-01-01 Sim4 clustering to Release 3
Fpps 2008-04-29 Release 5.5 accounting
Fpps 2008-08-15 Release 5.9 accounting
Fpps 2008-12-18 5.12 accounting

Clone Sequence Records

GM06581.complete Sequence

1482 bp (1482 high quality bases) assembled on 2002-12-11

GenBank Submission: AF132554

> GM06581.complete
TTCAGTCACACTGGCAATTTGGTACCCGAAGTTGAATTGCCGTTTTGTGA
AGCGGATAGTTACCTGCCGATAATCTTAAATAAAAATGTTTAAACTGGCC
CGTATGCTCCTGCCGCAGCAGCGGATCCTGGCCAGCCCGCTGCGCCTGCA
ACGCCTGATCTCTACCAGCGACGAGGTCAACGCAGAGCCCATCATCAAGT
CCATGGACACCATTGGCGGCCTCCCCACCGAACTGGTCAACGAACAGAAG
CTGAAGAAGACTAGCAGAACCTTATCGACGCTCCAAAATCACTCGGTTCC
CATTGCCGCTCGCGTCACGGTGTCGAAAGATGAGAGTCGCGACTTTATGG
CCGTGTTCCCAGATCTTGTGCGTGACATCACCACCGTGACGAAGGCATAC
AATTGCAGCGACGCAGCCAAATGGTTCGCCCAAGTCCTCCAGTACAATGT
GCCCAGGGGCAAGAAGAACCGCGGCATCCTCACCGTGCTCACGTATAAGA
ATCTAGTGCCCACCCAGGATCTTACGCCGGAGAACATAAAGCTCGCCCAG
TATCTGGGCTGGTGCGTGGAAATGCTCCAAAGTTTTTTCATCATCTCAGA
CGATGTGATGGACAACAGCACCACCAGACGCGGCCAACCCTGCTGGCACA
AGGTGGAGAACGTGGGCCTGACTGCCATTAACGATGCTCTTATGATTGAA
AACGCCATGTATGCCATTCTCAAGAAGCACTTCAGCCACTTGGACTGCTA
TGTCGCCCTAATGGAGCTCTTCCACGAAATCACATACATCACTACCTGCG
GACAATCGTTGGACCAACTGAACTCGAACCGCTGTGTCTCGGAATTCACA
ATGGAAAACTACAAAGCAATTGTCGAAAATAAGACTGCCTATTACTCCTT
CTACCTTCCATTCGCACTTGCTTTGCACTTGGCTGGCTATAAAGACGCAG
AGGCCTTCCGTCAATCGAAGACCATTCTCCTAGAAATGGGCAACTTTTTC
CAGGTTCAAGATGATTTTCTCGACTGCTTCGGTAATCCGGAAGTGACTGG
TAAAATTGGAACCGACATTCAGGACAACAAGTGCTCGTGGCTGGCTGTGG
TGGCTATGCAGCGAGCCAATGTCGAGCAAAAGCAAATCATGGTCGATTGC
TATGGCAAAGAAGAACCAGCTAAAGTGGAGAGAGTGAAAGAACTGTACAA
GGAACTTGGACTGCCATCCACCTATGCCATTTTCGAGGAGGAATCCTACA
ACATGATTAAAACGCACATACAACAAACCTCACGCGGGGTGCCTCACCAG
ACCTTCCTGCAAATACTCAACAAAATCTACCAACGTGACTCCTAAATTAC
TCAAGCGCAACGACTTTACGGATACGTTTTTAATTAAATTGTAGTTTTAG
CATTTACATGGATGAACTGTTAGCAAGGGCTCAGCAATTACAACCGATAT
GAACTTTTTACTATAAAAAAAAAAAAAAAAAA

GM06581.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1568 Fpps-RA 98..1562 1..1465 7250 99.6 Plus
CG7741.a 2942 CG7741.a 2839..2942 1465..1362 520 100 Minus
CG7741-RA 3159 CG7741-RA 3056..3159 1465..1362 520 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7193599..7193961 936..574 1815 100 Minus
chr2R 21145070 chr2R 7192951..7193253 1464..1162 1500 99.7 Minus
chr2R 21145070 chr2R 7194701..7194967 267..1 1335 100 Minus
chr2R 21145070 chr2R 7193312..7193539 1163..936 1095 98.7 Minus
chr2R 21145070 chr2R 7194020..7194234 574..360 1060 99.5 Minus
chr2R 21145070 chr2R 7194305..7194402 362..265 490 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:18:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11306159..11306521 936..574 1815 100 Minus
2R 25286936 2R 11305510..11305813 1465..1162 1505 99.7 Minus
2R 25286936 2R 11307261..11307527 267..1 1335 100 Minus
2R 25286936 2R 11305872..11306099 1163..936 1095 98.7 Minus
2R 25286936 2R 11306580..11306794 574..360 1060 99.5 Minus
2R 25286936 2R 11306865..11306962 362..265 490 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11307358..11307720 936..574 1815 100 Minus
2R 25260384 2R 11306709..11307012 1465..1162 1505 99.6 Minus
2R 25260384 2R 11308460..11308726 267..1 1335 100 Minus
2R 25260384 2R 11307071..11307298 1163..936 1095 98.6 Minus
2R 25260384 2R 11307779..11307993 574..360 1060 99.5 Minus
2R 25260384 2R 11308064..11308161 362..265 490 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:55:47 has no hits.

GM06581.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:57:05 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7192951..7193251 1164..1464 99 <- Minus
chr2R 7193312..7193538 937..1163 98 <- Minus
chr2R 7193599..7193960 575..936 100 <- Minus
chr2R 7194020..7194231 363..574 99 <- Minus
chr2R 7194305..7194399 268..362 100 <- Minus
chr2R 7194701..7194967 1..267 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:04:48 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 1..1260 86..1345 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:24 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 1..1260 86..1345 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:48 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 1..1260 86..1345 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:57 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 1..1260 86..1345 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:04:01 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 1..1260 86..1345 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:39 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 39..1502 1..1464 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:24 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 39..1502 1..1464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:48 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 2..1465 1..1464 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:57 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 39..1502 1..1464 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:04:01 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 2..1465 1..1464 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:05 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11305511..11305811 1164..1464 99 <- Minus
2R 11305872..11306098 937..1163 98 <- Minus
2R 11306159..11306520 575..936 100 <- Minus
2R 11306580..11306791 363..574 99 <- Minus
2R 11306865..11306959 268..362 100 <- Minus
2R 11307261..11307527 1..267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:05 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11305511..11305811 1164..1464 99 <- Minus
2R 11305872..11306098 937..1163 98 <- Minus
2R 11306159..11306520 575..936 100 <- Minus
2R 11306580..11306791 363..574 99 <- Minus
2R 11306865..11306959 268..362 100 <- Minus
2R 11307261..11307527 1..267 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:57:05 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11305511..11305811 1164..1464 99 <- Minus
2R 11305872..11306098 937..1163 98 <- Minus
2R 11306159..11306520 575..936 100 <- Minus
2R 11306580..11306791 363..574 99 <- Minus
2R 11306865..11306959 268..362 100 <- Minus
2R 11307261..11307527 1..267 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:48 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7193016..7193316 1164..1464 99 <- Minus
arm_2R 7193377..7193603 937..1163 98 <- Minus
arm_2R 7193664..7194025 575..936 100 <- Minus
arm_2R 7194085..7194296 363..574 99 <- Minus
arm_2R 7194370..7194464 268..362 100 <- Minus
arm_2R 7194766..7195032 1..267 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:45 Download gff for GM06581.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11308064..11308158 268..362 100 <- Minus
2R 11308460..11308726 1..267 100   Minus
2R 11306710..11307010 1164..1464 99 <- Minus
2R 11307071..11307297 937..1163 98 <- Minus
2R 11307358..11307719 575..936 100 <- Minus
2R 11307779..11307990 363..574 99 <- Minus

GM06581.pep Sequence

Translation from 85 to 1344

> GM06581.pep
MFKLARMLLPQQRILASPLRLQRLISTSDEVNAEPIIKSMDTIGGLPTEL
VNEQKLKKTSRTLSTLQNHSVPIAARVTVSKDESRDFMAVFPDLVRDITT
VTKAYNCSDAAKWFAQVLQYNVPRGKKNRGILTVLTYKNLVPTQDLTPEN
IKLAQYLGWCVEMLQSFFIISDDVMDNSTTRRGQPCWHKVENVGLTAIND
ALMIENAMYAILKKHFSHLDCYVALMELFHEITYITTCGQSLDQLNSNRC
VSEFTMENYKAIVENKTAYYSFYLPFALALHLAGYKDAEAFRQSKTILLE
MGNFFQVQDDFLDCFGNPEVTGKIGTDIQDNKCSWLAVVAMQRANVEQKQ
IMVDCYGKEEPAKVERVKELYKELGLPSTYAIFEEESYNMIKTHIQQTSR
GVPHQTFLQILNKIYQRDS*

GM06581.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12410-PA 417 GF12410-PA 1..417 1..419 2183 96.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22668-PA 419 GG22668-PA 1..419 1..419 2208 96.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19915-PA 413 GH19915-PA 1..413 1..419 2029 88.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-PA 419 CG12389-PA 1..419 1..419 2173 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19872-PA 413 GI19872-PA 1..413 1..419 2006 87.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17346-PA 419 GL17346-PA 1..419 1..419 2140 93.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11601-PA 419 GA11601-PA 1..419 1..419 2140 93.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20447-PA 419 GM20447-PA 1..419 1..419 2260 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25915-PA 383 GD25915-PA 1..383 1..419 2022 90.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15042-PA 415 GJ15042-PA 1..415 1..419 2023 88.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:50:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22106-PA 411 GK22106-PA 1..411 1..419 1908 83.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13024-PA 419 GE13024-PA 1..419 1..419 2261 99 Plus

GM06581.hyp Sequence

Translation from 85 to 1344

> GM06581.hyp
MFKLARMLLPQQRILASPLRLQRLISTSDEVNAEPIIKSMDTIGGLPTEL
VNEQKLKKTSRTLSTLQNHSVPIAARVTVSKDESRDFMAVFPDLVRDITT
VTKAYNCSDAAKWFAQVLQYNVPRGKKNRGILTVLTYKNLVPTQDLTPEN
IKLAQYLGWCVEMLQSFFIISDDVMDNSTTRRGQPCWHKVENVGLTAIND
ALMIENAMYAILKKHFSHLDCYVALMELFHEITYITTCGQSLDQLNSNRC
VSEFTMENYKAIVENKTAYYSFYLPFALALHLAGYKDAEAFRQSKTILLE
MGNFFQVQDDFLDCFGNPEVTGKIGTDIQDNKCSWLAVVAMQRANVEQKQ
IMVDCYGKEEPAKVERVKELYKELGLPSTYAIFEEESYNMIKTHIQQTSR
GVPHQTFLQILNKIYQRDS*

GM06581.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-PA 419 CG12389-PA 1..419 1..419 2173 100 Plus