Clone GM06606 Report

Search the DGRC for GM06606

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:66
Well:6
Vector:pBS SK-
Associated Gene/TranscriptSlbp-RA
Protein status:GM06606.pep: gold
Preliminary Size:1273
Sequenced Size:1133

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11886 2001-01-01 Release 2 assignment
CG11886 2002-05-17 Blastp of sequenced clone
CG11886 2003-01-01 Sim4 clustering to Release 3
Slbp 2008-04-29 Release 5.5 accounting
Slbp 2008-08-15 Release 5.9 accounting
Slbp 2008-12-18 5.12 accounting

Clone Sequence Records

GM06606.complete Sequence

1133 bp (1133 high quality bases) assembled on 2002-05-17

GenBank Submission: AY118836

> GM06606.complete
TTTGCGCAGAAAACGCAAAACACCGCCGCGACAACATCCTGGAGCAGCGG
ACCGCATCATACACAGCACAGTAAACAAACGAAAGATAATTGCACAACAT
GCTCTGCGAGGATCAGCACATGTCCGTGGAGAACACACCGCAGAAAGGCT
CCGGCAGCCTGAATTCCTCAGCATCCTCCATTTCGATCGATGTGAAGCCC
ACCATGCAGAGCTGGGCCCAGGAGGTCCGCGCGGAGTTTGGCCACAGTGA
CGAGGCCTCCAGTTCCTTGAATAGCAGCGCTGCCAGCTGCGGTTCCTTGG
CCAAAAAGGAGACAGCCGACGGTAATCTGGAGTCCAAAGATGGCGAGGGC
CGGGAGATGGCATTTGAGTTCCTGGATGGCGTCAACGAGGTAAAGTTCGA
GCGCCTGGTCAAGGAGGAGAAGCTAAAAACGCCCTACAAGCGCCGACACT
CGTTCACGCCGCCCAGCAACGAGAACAGTCGCTCCAACAGTCCAAACAGC
AGCAACTCCTCGGCCAACGGAGATGCAGCTGCGCCCAAAGGCGGCAACAA
TCCCCATTCGAGGAACTCAAAAAAGTCTGGCAACTTCCGCGCCCACAAGG
AGGAGAAACGGGTGCGCCACAACAGCTACACGTCCTCCACCTCATCGTCA
TCCTCCTACACCGAAGCCGATCCCGCCATCCTAAGTCGCAGGCAGAAGCA
AATAGATTACGGAAAGAATACTGCCGCCTACGAGCGCTATGTGGAAATGG
TGCCAAAGGACGAGCGGACTCGCGATCATCCGCGCACCCCGAACAAGTAT
GGAAAGTACAGCCGCCGCGCCTTCGATGGGCTCGTGAAGATCTGGCGCAA
AAGCCTCCACATCTATGATCCACCTACACAAGCGCGCGACACGGCCAAGG
ACAGTAATTCCGACTCGGATTCTGACTAGGATCGAATCTTGTTACCGGGC
CGGGCTATGTTTTTCAAATATCGGGGGTTTAACTACTAATTTTTATTTCA
AGTACAAAGTTAAAACTATGAATCAAACACGCATCTTCGAGTCACAAGGC
CGTGTACGGGGAATTGTTACGCAGATGTTTTGTTGAATAAAATGGCGTCT
TACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GM06606.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Slbp-RA 1431 Slbp-RA 204..1308 1..1105 5525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 24974945..24975795 1103..253 4255 100 Minus
chr3R 27901430 chr3R 24975854..24976108 255..1 1260 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:18:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29152072..29152924 1105..253 4265 100 Minus
3R 32079331 3R 29152983..29153237 255..1 1275 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 28892903..28893755 1105..253 4265 100 Minus
3R 31820162 3R 28893814..28894068 255..1 1275 100 Minus
Blast to na_te.dros performed 2019-03-16 13:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2811..3033 464..702 151 57.8 Plus

GM06606.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:47:27 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 24974945..24975793 255..1103 100 <- Minus
chr3R 24975855..24976108 1..254 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:04:51 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 1..831 99..929 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:49:21 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 1..831 99..929 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:22:27 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 1..831 99..929 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:00 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 1..831 99..929 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:24:20 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 1..831 99..929 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:26:20 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 11..1113 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:49:21 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 11..1113 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:27 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 30..1132 1..1103 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:01 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 11..1113 1..1103 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:20 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
Slbp-RA 30..1132 1..1103 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:47:27 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29152074..29152922 255..1103 100 <- Minus
3R 29152984..29153237 1..254 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:47:27 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29152074..29152922 255..1103 100 <- Minus
3R 29152984..29153237 1..254 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:47:27 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29152074..29152922 255..1103 100 <- Minus
3R 29152984..29153237 1..254 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:27 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24978706..24978959 1..254 100   Minus
arm_3R 24977796..24978644 255..1103 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:14:15 Download gff for GM06606.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28892905..28893753 255..1103 100 <- Minus
3R 28893815..28894068 1..254 100   Minus

GM06606.hyp Sequence

Translation from 98 to 928

> GM06606.hyp
MLCEDQHMSVENTPQKGSGSLNSSASSISIDVKPTMQSWAQEVRAEFGHS
DEASSSLNSSAASCGSLAKKETADGNLESKDGEGREMAFEFLDGVNEVKF
ERLVKEEKLKTPYKRRHSFTPPSNENSRSNSPNSSNSSANGDAAAPKGGN
NPHSRNSKKSGNFRAHKEEKRVRHNSYTSSTSSSSSYTEADPAILSRRQK
QIDYGKNTAAYERYVEMVPKDERTRDHPRTPNKYGKYSRRAFDGLVKIWR
KSLHIYDPPTQARDTAKDSNSDSDSD*

GM06606.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:53:42
Subject Length Description Subject Range Query Range Score Percent Strand
Slbp-PA 276 CG11886-PA 1..276 1..276 1436 100 Plus

GM06606.pep Sequence

Translation from 98 to 928

> GM06606.pep
MLCEDQHMSVENTPQKGSGSLNSSASSISIDVKPTMQSWAQEVRAEFGHS
DEASSSLNSSAASCGSLAKKETADGNLESKDGEGREMAFEFLDGVNEVKF
ERLVKEEKLKTPYKRRHSFTPPSNENSRSNSPNSSNSSANGDAAAPKGGN
NPHSRNSKKSGNFRAHKEEKRVRHNSYTSSTSSSSSYTEADPAILSRRQK
QIDYGKNTAAYERYVEMVPKDERTRDHPRTPNKYGKYSRRAFDGLVKIWR
KSLHIYDPPTQARDTAKDSNSDSDSD*

GM06606.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18411-PA 272 GF18411-PA 1..263 1..266 821 80.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12032-PA 274 GG12032-PA 1..265 1..267 1037 91.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23223-PA 268 GH23223-PA 1..268 1..276 679 65.2 Plus
Dgri\GH14009-PA 268 GH14009-PA 1..268 1..276 677 65.2 Plus
Dgri\GH23225-PA 268 GH23225-PA 1..268 1..276 630 62.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Slbp-PA 276 CG11886-PA 1..276 1..276 1436 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22353-PA 252 GI22353-PA 1..252 1..276 717 69.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23600-PA 269 GL23600-PA 1..257 1..263 834 77.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11260-PA 269 GA11260-PA 1..257 1..263 797 77.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12257-PA 276 GM12257-PA 1..267 1..267 1087 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15074-PA 257 GD15074-PA 1..248 1..267 993 86.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:45:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14235-PA 251 GJ14235-PA 1..251 1..276 707 71.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:45:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22497-PA 274 GK22497-PA 1..257 1..260 742 66.3 Plus
Dwil\GK22498-PA 274 GK22498-PA 1..257 1..260 742 66.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10470-PA 273 GE10470-PA 1..263 1..266 1009 90.6 Plus