Clone GM06992 Report

Search the DGRC for GM06992

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:69
Well:92
Vector:pBS SK-
Associated Gene/TranscriptRpS7-RB
Protein status:GM06992.pep: wuzgold
Sequenced Size:2085

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
RpS7 2008-04-29 Release 5.5 accounting
RpS7 2008-08-15 Release 5.9 accounting
RpS7 2008-12-18 5.12 accounting

Clone Sequence Records

GM06992.complete Sequence

2085 bp (2085 high quality bases) assembled on 2005-10-06

GenBank Submission: BT023903

> GM06992.complete
AAAGATGGCTATCGGCTCCAAGATTATCAAGCCCGGCGGCTCGGATCCCG
ATGACTTCGAGAAGTCCATTGCCCAGGCGTTGGTGGAACTCGAGGCCAAC
AGCGACCTGAAGCCCTACCTGCGCGATCTGCACATCACCCGTGCCCGCGA
GATCGAGTTCGGCAGCAAGAAGGCCGTCATCATCTACGTGCCCATTCCAC
AGCAGAAGGTGTTCCAGAAGATCCAGATCATCCTGGTCCGCGAGCTGGAG
AAGAAGTTCTCGGGCAAGCACGTCGTCGTGATTGCGGAGCGCAAGATCCT
GCCCAAGCCCACGCGCAAGGCCCGCAACCCCCTCAAGCAGAAGCGTCCAC
GCTCCAGGACTCTGACCGCTGTGTACGACGCCATCCTTGAGGATCTGGTC
TTCCCCGCCGAGATTGTGGGCAAGCGCATCCGCGTCAAGCTCGACGGCTC
CCAGCTGGTCAAGGTGCACCTGGACAAGAACCAGCAGACCACCATTGAAC
ACAAAGTAAGCATAAGCATCCTCCACCTCAAAGAAGAGTGCATCGTGTGT
GTTAGCAGGCGCGTACCCTCGATATTTGGGCCTTCCGTGCCATGGAGCTC
AATCTTCGCCAGGGGACGCAGAACAGTCAGGGCCAATTACTCGTTATTGC
AGGCATTAGAAGCCATTGCGGTCCTGCATCTCCAAATATTGGCCACAGTT
GGTCTTTTAATACATCGTTCTTGTGTTTTTCGCTGGCTGTCCTTCCAAAG
CCAGTGATTGTCAAACAGAACGTACATTAATGGCAGCTTATCACTCCACA
ATGTTGAGCCGAGTTTTCACGGCTACTGCATTACTTTCCGGCTCGCCACA
TCATTACACACTCAAATCGATACTTGAAACCATTTAAACAGTAGAATCAG
AAGTCAAATAAGGGGGATAACAGATGGATAGAAAGATTATATGGTTATGT
GTACATAGAACTTTCTATCGTTTTTGTGTTATTTGCTGGAAGTTACATCC
AAAGCCAGTGATTGTCAAACAGAACGTAAATTAATGCGGCTATCACTCCA
CAATGTTGAGCCGGCTTTCCAGGGCTACTGCATTACTTTTCGGCTCGCCA
CATTCCCGTAGAATCTTTTAAATACCTTGGTTTCTACCACCGTTCTTGTG
TTATTCGCTAGATCTTTTCATGGCCTAGCGAGCGTCAAACAGAACGCAAA
CTGAAGCAACGAATCTCCACAATGGTGGGTCTACTTTACCAGGACTGCAT
CATTACTAAAGGATTGCTACAGTTGAATATCCACGAAAATGCTAATTGTG
AACTCCGTTCTTGTGTTATTCGCTAAGCGATTACCTAAGCTCAGCGATTG
TCAAACAGAACGTAGATTAACTGCCGCTAATCACTCCACAATGTTGAGCC
GACTCTCAACGGCTACTGCATTACTATATGCGCCACATTCATGTTAATCA
ACACTTAGCCCTTGAATACTTTGGTTTCCATCACCGTTCTTGTGTTATTT
TCTGGACGTTGTTCAAGTCCAGCGATCGTCAAACAGAACGCAAAGTAATG
CAACGAATCACTCCACAATGGTGGGTCTATTTTGCCAGGACAGCATCATT
ACTTAAGGATTGCAACAGCACCTTACATCTAGAGTTACTAATCTGAAAAC
ACACACGATGCACTTTGAGTGCCGCCTATTTGCCTCTCGAGCGCCGTTTA
GTTTCCTGGTGCCTCGGGACTTCCTATATAAGCGGAAGATTAATCCAGCC
TACCGTACGATATCTTCGCTGCGGTATTTTCTGCCGCAGCGGAGGTTGCG
GTGCTGTACACTGCAAAAAATATGTGAATTCCTGTAATCGTTTCCACTAA
TACGTGCTGTATTTATCTCTCCAGGTCGACACCTTCACCTCGGTCTACAA
GAAGCTGACTGGTCGCGATGTTACCTTCGAATTCCCCGACAACTACCTGA
ATGTCTAGAGCGGCGGGTTCTCGTTCGAGAGTAGCACTGGTTCGCCGGTT
CATCTGGGAATATGAGTTTTTTACATGAGCTAGAGAACGTGAATAAACAT
TAAACAATCTAAAACTAAAAAAAAAAAAAAAAAAA

GM06992.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7.d 2257 RpS7.d 47..2116 1..2068 9890 98.5 Plus
RpS7.b 1879 RpS7.b 47..1879 1..1831 8810 98.7 Plus
RpS7.e 1500 RpS7.e 47..1500 1..1452 7035 99 Plus
RpS7.e 1500 RpS7.e 1223..1320 1521..1618 355 90.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 26028981..26030878 2066..171 9245 99.3 Minus
chr3R 27901430 chr3R 26030942..26031112 173..3 855 100 Minus
chr3R 27901430 chr3R 26029775..26030043 1618..1342 420 80 Minus
chr3R 27901430 chr3R 26029429..26029705 1272..1006 355 79.3 Minus
chr3R 27901430 chr3R 26029946..26030051 851..744 340 89.8 Minus
chr3R 27901430 chr3R 26030198..26030305 1103..998 325 88.9 Minus
chr3R 27901430 chr3R 26029622..26029705 835..752 270 88.1 Minus
chr3R 27901430 chr3R 26030214..26030297 1425..1342 255 86.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
snoRNA:Psi18S-1377a-RA 139 CR33750-RA 1..139 715..853 680 99.2 Plus
snoRNA:Psi18S-1377d-RA 136 CR34626-RA 1..136 1305..1440 680 100 Plus
snoRNA:Psi18S-1377b-RA 138 CR34628-RA 1..135 968..1102 675 100 Plus
snoRNA:Psi18S-1377b-RA 138 CR34628-RA 1..135 715..850 355 87.5 Plus
snoRNA:Psi18S-1377a-RA 139 CR33750-RA 1..137 968..1103 345 86.9 Plus
snoRNA:Psi18S-1377d-RA 136 CR34626-RA 38..121 752..835 270 88 Plus
snoRNA:Psi18S-1377a-RA 139 CR33750-RA 38..121 1342..1425 255 86.9 Plus
snoRNA:Psi18S-1377b-RA 138 CR34628-RA 39..120 1342..1425 235 89.2 Plus
snoRNA:Psi18S-1377d-RA 136 CR34626-RA 38..121 1006..1087 235 89.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30206528..30208427 2068..171 9030 98.5 Minus
3R 32079331 3R 30208489..30208659 173..3 855 100 Minus
3R 32079331 3R 30207324..30207477 1618..1465 410 84.4 Minus
3R 32079331 3R 30206978..30207254 1272..1006 355 79.3 Minus
3R 32079331 3R 30207496..30207600 850..744 335 89.7 Minus
3R 32079331 3R 30207747..30207854 1103..998 325 88.9 Minus
3R 32079331 3R 30207171..30207254 835..752 270 88.1 Minus
3R 32079331 3R 30207763..30207846 1425..1342 255 86.9 Minus
3R 32079331 3R 30207511..30207592 1425..1342 215 89.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29947359..29949258 2068..171 9040 98.4 Minus
3R 31820162 3R 29949320..29949490 173..3 855 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:50:04 has no hits.

GM06992.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:50:45 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 26028981..26030876 173..2066 99 <- Minus
chr3R 26030943..26031112 1..172 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:05:02 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 1..753 5..757 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:37:39 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 1..753 5..757 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 07:05:35 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:13:54 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 1..753 5..757 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 05:16:42 has no hits.
Sim4 to dmel-all-all_noncoding-r5.12.fasta performed 2010-04-22 17:18:45 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
snoRNA:Psi18S-1377d-RA 1..136 1305..1440 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:41:35 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 23..779 1..757 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:37:39 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 23..779 1..757 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 07:05:35 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:13:54 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
RpS7-RB 23..779 1..757 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 05:16:42 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:45 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30206530..30208425 173..2066 98 <- Minus
3R 30208490..30208659 1..172 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:45 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30206530..30208425 173..2066 98 <- Minus
3R 30208490..30208659 1..172 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:50:45 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30206530..30208425 173..2066 98 <- Minus
3R 30208490..30208659 1..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:35 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26032252..26034147 173..2066 98 <- Minus
arm_3R 26034212..26034381 1..172 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:50:17 Download gff for GM06992.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29947361..29949256 173..2066 98 <- Minus
3R 29949321..29949490 1..172 98   Minus

GM06992.pep Sequence

Translation from 4 to 756

> GM06992.pep
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVSISILHLKEECIVCVSRRVPSIFGPSVPWSSI
FARGRRTVRANYSLLQALEAIAVLHLQILATVGLLIHRSCVFRWLSFQSQ
*

GM06992.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:39:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16191-PA 194 GF16191-PA 1..169 1..169 852 97.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11951-PA 194 GG11951-PA 1..169 1..169 862 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18420-PA 194 GH18420-PA 1..169 1..169 852 97.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-PE 194 CG1883-PE 1..168 1..168 835 100 Plus
RpS7-PC 194 CG1883-PC 1..168 1..168 835 100 Plus
RpS7-PA 194 CG1883-PA 1..168 1..168 835 100 Plus
RpS7-PD 194 CG1883-PD 1..168 1..168 835 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24321-PA 194 GI24321-PA 1..169 1..169 853 97.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14128-PA 194 GL14128-PA 1..169 1..169 855 98.2 Plus
Dper\GL14058-PA 194 GL14058-PA 1..169 1..169 855 98.2 Plus
Dper\GL11058-PA 194 GL11058-PA 1..169 1..169 847 97.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15097-PA 194 GA15097-PA 1..169 1..169 855 98.2 Plus
Dpse\GA15097-PB 194 GA15097-PB 1..169 1..169 855 98.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12166-PA 194 GM12166-PA 1..169 1..169 862 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17201-PA 194 GD17201-PA 1..169 1..169 862 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10407-PA 202 GJ10407-PA 15..177 7..169 783 93.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13140-PA 194 GK13140-PA 1..169 1..169 851 97.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23400-PA 194 GE23400-PA 1..169 1..169 857 98.8 Plus

GM06992.hyp Sequence

Translation from 4 to 756

> GM06992.hyp
MAIGSKIIKPGGSDPDDFEKSIAQALVELEANSDLKPYLRDLHITRAREI
EFGSKKAVIIYVPIPQQKVFQKIQIILVRELEKKFSGKHVVVIAERKILP
KPTRKARNPLKQKRPRSRTLTAVYDAILEDLVFPAEIVGKRIRVKLDGSQ
LVKVHLDKNQQTTIEHKVSISILHLKEECIVCVSRRVPSIFGPSVPWSSI
FARGRRTVRANYSLLQALEAIAVLHLQILATVGLLIHRSCVFRWLSFQSQ
*

GM06992.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpS7-PE 194 CG1883-PE 1..168 1..168 835 100 Plus
RpS7-PC 194 CG1883-PC 1..168 1..168 835 100 Plus
RpS7-PA 194 CG1883-PA 1..168 1..168 835 100 Plus
RpS7-PD 194 CG1883-PD 1..168 1..168 835 100 Plus