Clone GM07807 Report

Search the DGRC for GM07807

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:78
Well:7
Vector:pBS SK-
Associated Gene/TranscriptCG32599-RA
Protein status:GM07807.pep: gold
Preliminary Size:1431
Sequenced Size:1263

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12047 2001-01-01 Release 2 assignment
CG32599 2003-01-01 Sim4 clustering to Release 3
CG32599 2005-03-04 Blastp of sequenced clone
CG32599 2008-04-29 Release 5.5 accounting
CG32599 2008-08-15 Release 5.9 accounting
CG32599 2008-12-18 5.12 accounting

Clone Sequence Records

GM07807.complete Sequence

1263 bp (1263 high quality bases) assembled on 2006-06-05

GenBank Submission: BT021428

> GM07807.complete
CGGACGCGATCTTCACTTCATACAAATTGTGAAATTTTTGCGAAAATTTG
AATACACTCCGTTCCGAAACTCGATTGTTTTTTTGCGGTCCGTTCAAACC
GAACTAGTACGTAAGCCACTTATTCCGTCGCAGAGCCACGCCCATGTCCG
CGACCGCCTCAAATCGCCAGCCGGTGCCAAAATTTCCGGCCGCCATGCCG
CGTGGAACGGGCACAGTGTGCTCCAATCCGGCGGTGCCCAAGTCGCCGGA
TGCCCTCACCTCCCTGGTGGCCCGGAAGAGCATTACGTCCATGTCGGAGG
AGGAGATCATTCAGGAGAATCTCAACGAGATCCTCGACCTCAAGTCGCGC
GAGGAGCGAAAAGCCAATGGACGTCTGGTGGCTGTGATCGTCTGTTTTCT
GGTGCTCTTCCTGGCTGTCTACCATGCCTGCGTCCGGAAGTCGGAGAACT
CGCTGGCTGGCGTCCTGGTACCGGCGGGCATCATGCTCTCCTACGGCGCC
TGGGTGGTCGTCCTGGCCAAGAGGGACAAGCACAGGCGTGCCATGTTTGA
GCGGCACATCGAGGAGGTGACGCTAAAGAACAAAATCGAGCTGGAGGAGA
AGCATGCGCGCCACGCGAAGAAGGCGCAATCGCATCATGGTCACTCCGGC
ACCGATTCCACGGGCAGTGCCTCCAGTTCGCTGCACTACGTCAACGAGCT
GCTGCCCAACGGTGGCGGTGAGCACCGCAAGAAGCAGCGACGCCATCGTC
ACAAGGAGCGCTCCGTGGAGCGAGATGATCATCATCAACGTAGCCATCAG
CGCTCGCATACGCCGGACATTGGCGTGCATCGTGGAGCGCCCAAGAGGCC
CAGTTTCCGGCAGAAGCTCTTCGGTCAGACCATCGCCCATGTCAAACTGG
TGGAGGCGCAGAGCGATAGCACGGATTCAGCTGGCGCATCTGGTCCGGGT
ACGAGATCAGGTCGCAGTACGGTCGCCAGTCCAGGTGGCCAGGCCAGTGC
TGCGGCCAAGCTCAATCCCGGCGAGAAACGACAGCGACTACAGCGCCTGG
ACACGTTGCCACTGGCGCAGGTGGTGCGTGTCAGCTCGATTCCGTGAGAT
ATAACCATCTGGATGGATGTACATATGCATGTGGAAGTGGAGTAGTTCTT
TCTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGCGGAGGCCCGACCTCGCC
ATTGTGTCGACTAAATAAATGTATTATAAAAAATAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

GM07807.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-RA 1309 CG32599-RA 77..1309 1..1234 6100 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14136377..14137061 549..1234 3380 99.9 Plus
chrX 22417052 chrX 14134232..14134582 1..351 1755 100 Plus
chrX 22417052 chrX 14136165..14136312 402..549 740 100 Plus
chrX 22417052 chrX 14135795..14135846 351..402 260 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:19:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14245830..14246519 549..1239 3390 99.7 Plus
X 23542271 X 14243686..14244036 1..351 1755 100 Plus
X 23542271 X 14245618..14245765 402..549 710 98.6 Plus
X 23542271 X 14245248..14245299 351..402 260 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14253928..14254617 549..1239 3400 99.7 Plus
X 23527363 X 14251784..14252134 1..351 1755 100 Plus
X 23527363 X 14253716..14253863 402..549 710 98.6 Plus
X 23527363 X 14253346..14253397 351..402 260 100 Plus
Blast to na_te.dros performed 2019-03-16 11:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 933..1027 772..866 113 62.9 Plus

GM07807.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:10:00 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14134232..14134581 1..350 100 -> Plus
chrX 14135795..14135846 351..402 100 -> Plus
chrX 14136166..14136311 403..548 100 -> Plus
chrX 14136377..14137038 549..1211 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:05:19 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..954 144..1097 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:24:10 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..954 144..1097 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:11 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..954 144..1097 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:43:07 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..954 144..1097 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:17 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..954 144..1097 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:52:26 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..954 144..1097 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:24:10 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..1233 1..1234 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:11 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..1233 1..1234 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:43:07 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..954 144..1097 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:17 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
CG32599-RA 1..1233 1..1234 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:00 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
X 14245619..14245764 403..548 98 -> Plus
X 14243686..14244035 1..350 100 -> Plus
X 14245248..14245299 351..402 100 -> Plus
X 14245830..14246514 549..1234 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:00 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
X 14245619..14245764 403..548 98 -> Plus
X 14243686..14244035 1..350 100 -> Plus
X 14245248..14245299 351..402 100 -> Plus
X 14245830..14246514 549..1234 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:10:00 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
X 14245619..14245764 403..548 98 -> Plus
X 14243686..14244035 1..350 100 -> Plus
X 14245248..14245299 351..402 100 -> Plus
X 14245830..14246514 549..1234 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:11 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14137719..14138068 1..350 100 -> Plus
arm_X 14139281..14139332 351..402 100 -> Plus
arm_X 14139652..14139797 403..548 98 -> Plus
arm_X 14139863..14140547 549..1234 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:51:53 Download gff for GM07807.complete
Subject Subject Range Query Range Percent Splice Strand
X 14251784..14252133 1..350 100 -> Plus
X 14253346..14253397 351..402 100 -> Plus
X 14253717..14253862 403..548 98 -> Plus
X 14253928..14254612 549..1234 99   Plus

GM07807.pep Sequence

Translation from 143 to 1096

> GM07807.pep
MSATASNRQPVPKFPAAMPRGTGTVCSNPAVPKSPDALTSLVARKSITSM
SEEEIIQENLNEILDLKSREERKANGRLVAVIVCFLVLFLAVYHACVRKS
ENSLAGVLVPAGIMLSYGAWVVVLAKRDKHRRAMFERHIEEVTLKNKIEL
EEKHARHAKKAQSHHGHSGTDSTGSASSSLHYVNELLPNGGGEHRKKQRR
HRHKERSVERDDHHQRSHQRSHTPDIGVHRGAPKRPSFRQKLFGQTIAHV
KLVEAQSDSTDSAGASGPGTRSGRSTVASPGGQASAAAKLNPGEKRQRLQ
RLDTLPLAQVVRVSSIP*

GM07807.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:32:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22390-PA 299 GF22390-PA 12..295 19..299 929 73.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17838-PA 313 GG17838-PA 1..313 1..317 1332 83.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12927-PA 278 GH12927-PA 26..278 31..317 697 55 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-PA 317 CG32599-PA 1..317 1..317 1620 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:32:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15157-PA 269 GI15157-PA 25..244 31..261 635 58.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14925-PA 318 GL14925-PA 48..318 30..317 829 62.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17016-PA 290 GA17016-PA 22..290 30..317 785 62.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17666-PA 313 GM17666-PA 1..312 1..316 1568 95.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17164-PA 313 GD17164-PA 1..313 1..317 1500 90.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20154-PA 289 GK20154-PA 28..289 32..317 759 58.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17130-PA 313 GE17130-PA 1..313 1..317 1433 88.4 Plus

GM07807.hyp Sequence

Translation from 143 to 1096

> GM07807.hyp
MSATASNRQPVPKFPAAMPRGTGTVCSNPAVPKSPDALTSLVARKSITSM
SEEEIIQENLNEILDLKSREERKANGRLVAVIVCFLVLFLAVYHACVRKS
ENSLAGVLVPAGIMLSYGAWVVVLAKRDKHRRAMFERHIEEVTLKNKIEL
EEKHARHAKKAQSHHGHSGTDSTGSASSSLHYVNELLPNGGGEHRKKQRR
HRHKERSVERDDHHQRSHQRSHTPDIGVHRGAPKRPSFRQKLFGQTIAHV
KLVEAQSDSTDSAGASGPGTRSGRSTVASPGGQASAAAKLNPGEKRQRLQ
RLDTLPLAQVVRVSSIP*

GM07807.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32599-PA 317 CG32599-PA 1..317 1..317 1620 100 Plus