Clone GM08044 Report

Search the DGRC for GM08044

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:80
Well:44
Vector:pBS SK-
Associated Gene/TranscriptFdh-RA
Protein status:GM08044.pep: gold
Preliminary Size:1548
Sequenced Size:1371

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6598 2001-01-01 Release 2 assignment
CG6598 2001-10-10 Blastp of sequenced clone
CG6598 2003-01-01 Sim4 clustering to Release 3
Fdh 2008-04-29 Release 5.5 accounting
Fdh 2008-08-15 Release 5.9 accounting
Fdh 2008-12-18 5.12 accounting

Clone Sequence Records

GM08044.complete Sequence

1371 bp (1371 high quality bases) assembled on 2001-10-10

GenBank Submission: AY089518

> GM08044.complete
CTTCCTTATCATCATTCATTTTCCAGTCGTTCTCCATTCGCCAATTGGAC
CTTGTCGCTAAACTTTCCAATAAACCATACTGCAAAGATGTCTGCTACCG
AGGGCAAGGTTATCACATGCAAGGCCGCCGTCGCTTGGGAGGCAAAGAAG
CCGCTGGTCATCGAGGATATCGAGGTGGCGCCGCCCAAGGCTCATGAGGT
GCGCATCAAGATCACGGCCACGGGCGTCTGCCACACGGATGCCTTCACCC
TGAGCGGTGCCGATCCGGAGGGCCTGTTCCCAGTGGTGTTGGGACATGAG
GGCGCCGGCATCGTGGAGAGCGTCGGCGAGGGCGTGACCAACTTCAAGGC
TGGCGACCATGTCATCGCTCTCTACATCCCCCAGTGCAACGAGTGCAAGT
TCTGCAAGAGCGGCAAGACGAATCTCTGCCAAAAGATCCGACTTACCCAG
GGCGCTGGAGTCATGCCCGAGGGCACCTCCCGTCTCAGCTGCAAGGGACA
GCAGTTGTTCCACTTCATGGGCACCTCCACCTTCGCAGAGTACACCGTGG
TGGCCGACATTTCGCTGACAAAGATCAACGAAAAGGCGCCGCTGGAGAAA
GTCTGCCTGCTGGGGTGCGGCATTTCCACAGGCTACGGAGCCGCCCTCAA
CACTGCCAAGGTGGAAGCCGGTAGCACCTGCGCTGTTTGGGGCTTGGGAG
CTGTGGGCTTGGCCGTGGGTTTGGGCTGCAAGAAGGCTGGTGCCGGCAAG
ATCTACGGCATTGACATCAATCCCGACAAGTTTGAGCTGGCCAAGAAGTT
TGGATTCACCGACTTTGTCAACCCCAAGGATGTGGCCGACAAGGGTTCGA
TCCAGAACTACCTGATCGATCTGACCGATGGTGGATTCGATTACACCTTC
GAATGCATTGGCAATGTGAACACCATGCGCTCCGCTTTGGAGGCCACACA
CAAGGGTTGGGGCACTTCGGTGGTGATCGGAGTGGCCGGTGCTGGACAGG
AGATTTCCACGCGACCCTTCCAGCTGGTCGTGGGTCGCGTGTGGAAGGGT
TCCGCCTTCGGAGGCTGGCGCTCCGTTTCCGATGTTCCCAAATTGGTGGA
GGACTACCTGAAGAAGGATCTGCTGGTGGACGAGTTCATCACCCACGAGC
TGCCGCTGTCGCAGATCAACGAGGCATTCGATCTGATGCACAAGGGCGAG
AGTATCCGATCCATTATTAAGTACTAAGCATGAGATAACAATTCTTTGCT
TTTCACTTTTTATACAAGTTGGCAATCGCATGCGATTGCTTAAAATAATA
AACTCCCAGTGTATATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

GM08044.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-RA 1590 Fdh-RA 190..1508 1..1319 6565 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6696443..6697564 1318..197 5595 99.9 Minus
chr3R 27901430 chr3R 6697790..6697899 110..1 550 100 Minus
chr3R 27901430 chr3R 6697631..6697724 200..107 455 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:19:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10870905..10872027 1319..197 5600 99.9 Minus
3R 32079331 3R 10872253..10872362 110..1 550 100 Minus
3R 32079331 3R 10872094..10872187 200..107 455 98.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10611736..10612858 1319..197 5600 99.9 Minus
3R 31820162 3R 10613084..10613193 110..1 550 100 Minus
3R 31820162 3R 10612925..10613018 200..107 455 98.9 Minus
Blast to na_te.dros performed 2019-03-16 18:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
aurora-element 4263 aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). 3015..3055 375..414 121 80.5 Plus

GM08044.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:06:18 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6696443..6697562 199..1318 99 <- Minus
chr3R 6697633..6697722 109..198 98 <- Minus
chr3R 6697792..6697899 1..108 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:05:23 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 1..1140 88..1227 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:43:11 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 1..1140 88..1227 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:08:58 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 1..1140 88..1227 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:12:04 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 1..1140 88..1227 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:49 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 1..1140 88..1227 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:25:39 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 19..1336 1..1318 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:43:11 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 19..1336 1..1318 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:08:58 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 20..1337 1..1318 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:12:04 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 19..1336 1..1318 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:49 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
Fdh-RA 20..1337 1..1318 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:18 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10872255..10872362 1..108 100   Minus
3R 10870906..10872025 199..1318 99 <- Minus
3R 10872096..10872185 109..198 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:18 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10872255..10872362 1..108 100   Minus
3R 10870906..10872025 199..1318 99 <- Minus
3R 10872096..10872185 109..198 98 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:06:18 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10872255..10872362 1..108 100   Minus
3R 10870906..10872025 199..1318 99 <- Minus
3R 10872096..10872185 109..198 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:58 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6696628..6697747 199..1318 99 <- Minus
arm_3R 6697818..6697907 109..198 98 <- Minus
arm_3R 6697977..6698084 1..108 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:48:28 Download gff for GM08044.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10613086..10613193 1..108 100   Minus
3R 10611737..10612856 199..1318 99 <- Minus
3R 10612927..10613016 109..198 98 <- Minus

GM08044.hyp Sequence

Translation from 0 to 1226

> GM08044.hyp
LPYHHSFSSRSPFANWTLSLNFPINHTAKMSATEGKVITCKAAVAWEAKK
PLVIEDIEVAPPKAHEVRIKITATGVCHTDAFTLSGADPEGLFPVVLGHE
GAGIVESVGEGVTNFKAGDHVIALYIPQCNECKFCKSGKTNLCQKIRLTQ
GAGVMPEGTSRLSCKGQQLFHFMGTSTFAEYTVVADISLTKINEKAPLEK
VCLLGCGISTGYGAALNTAKVEAGSTCAVWGLGAVGLAVGLGCKKAGAGK
IYGIDINPDKFELAKKFGFTDFVNPKDVADKGSIQNYLIDLTDGGFDYTF
ECIGNVNTMRSALEATHKGWGTSVVIGVAGAGQEISTRPFQLVVGRVWKG
SAFGGWRSVSDVPKLVEDYLKKDLLVDEFITHELPLSQINEAFDLMHKGE
SIRSIIKY*

GM08044.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 09:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-PA 379 CG6598-PA 1..379 30..408 1988 100 Plus

GM08044.pep Sequence

Translation from 87 to 1226

> GM08044.pep
MSATEGKVITCKAAVAWEAKKPLVIEDIEVAPPKAHEVRIKITATGVCHT
DAFTLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVIALYIPQC
NECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFA
EYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVEAGSTCAV
WGLGAVGLAVGLGCKKAGAGKIYGIDINPDKFELAKKFGFTDFVNPKDVA
DKGSIQNYLIDLTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVA
GAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEF
ITHELPLSQINEAFDLMHKGESIRSIIKY*

GM08044.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16175-PA 379 GF16175-PA 1..379 1..379 1956 97.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17256-PA 379 GG17256-PA 1..379 1..379 1983 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:48:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18738-PA 379 GH18738-PA 1..379 1..379 1902 93.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Fdh-PA 379 CG6598-PA 1..379 1..379 1988 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24655-PA 379 GI24655-PA 1..379 1..379 1876 91.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12061-PA 379 GL12061-PA 1..379 1..379 1938 96 Plus
Dper\GL21779-PA 360 GL21779-PA 30..261 37..287 161 26.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19711-PA 379 GA19711-PA 1..379 1..379 1937 95.8 Plus
Dpse\GA26401-PA 360 GA26401-PA 30..338 37..370 164 24.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26140-PA 379 GM26140-PA 1..379 1..379 1988 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20694-PA 379 GD20694-PA 1..379 1..379 1993 99.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24029-PA 379 GJ24029-PA 1..379 1..379 1899 93.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13286-PA 380 GK13286-PA 1..380 1..379 1922 95.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:48:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24658-PA 379 GE24658-PA 1..379 1..379 1982 99.2 Plus