BDGP Sequence Production Resources |
Search the DGRC for GM08921
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 89 |
Well: | 21 |
Vector: | pBS SK- |
Associated Gene/Transcript | Ntf-2-RA |
Protein status: | GM08921.pep: gold |
Preliminary Size: | 934 |
Sequenced Size: | 747 |
Gene | Date | Evidence |
---|---|---|
CG1740 | 2001-01-01 | Release 2 assignment |
CG1740 | 2002-03-19 | Blastp of sequenced clone |
CG10174 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1740 | 2003-01-01 | Sim4 clustering to Release 3 |
Ntf-2 | 2008-04-29 | Release 5.5 accounting |
Ntf-2 | 2008-08-15 | Release 5.9 accounting |
Ntf-2 | 2008-12-18 | 5.12 accounting |
747 bp (747 high quality bases) assembled on 2002-03-19
GenBank Submission: AY094761
> GM08921.complete TGATCTGAGCGCAGTCGGTTGATTTCATTTGGTTTTTTTTTTAATTATTC GTGTCGCCGCGATCGGATCGGATTTCCCATAATCTCTGAGCGTTCCGCCT ATCCTTCAAGTGAAATGTCGCTGAATCCGCAGTACGAGGACATTGGCAAG GGATTTGTGCAGCAGTACTATGCGATATTCGATGACCCGGCGAATCGGGC GAACGTGGTTAATTTCTATAGCGCTACCGACTCATTCATGACCTTTGAAG GCCACCAAATACAGGGGGCACCCAAGATTCTGGAAAAAGTTCAGAGTCTG AGCTTTCAGAAGATTACCAGAGTGATAACCACAGTGGACTCGCAGCCAAC TTTCGATGGCGGAGTTCTGATCAACGTCCTTGGAAGACTACAGTGCGATG ACGATCCCCCACATGCCTTCTCGCAGGTCTTTTTCCTGAAGGCCAACGCA GGCACCTTCTTTGTGGCCCACGACATCTTCCGTCTCAACATCCACAACTC TGCCTAGGAGCACTCCACTTACCTACGTATGCACACCACTCAGCACCACA CATAATCGACATCCAAAGATGCCCAGCGCCAGATGATAACAACAAGCTCG GCAGTGGAACTCAGAAAAAAAAAATATAACAAAGCCAGCCAGCGGTCTCA CGATTATCAGCAAATACAAAAGTTAGAAAAAGAAAAAAAAAAAAAAAACA ATAAAAAAATAAGAAAATAACGCTAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ntf-2-RA | 1297 | Ntf-2-RA | 106..831 | 1..726 | 3630 | 100 | Plus |
Ntf-2-RB | 670 | Ntf-2-RB | 106..523 | 1..418 | 1985 | 98.3 | Plus |
Ntf-2r-RA | 698 | Ntf-2r-RA | 31..448 | 100..517 | 1595 | 92.1 | Plus |
Ntf-2r-RA | 698 | Ntf-2r-RA | 511..619 | 583..695 | 245 | 84 | Plus |
Ntf-2r-RA | 698 | Ntf-2r-RA | 461..497 | 544..580 | 170 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 20903900..20904233 | 391..724 | 1670 | 100 | Plus |
chr2L | 23010047 | chr2L | 18453450..18454038 | 100..695 | 1635 | 86.2 | Plus |
chrX | 22417052 | chrX | 20900657..20900879 | 1..223 | 1115 | 100 | Plus |
chrX | 22417052 | chrX | 20901693..20901794 | 292..393 | 510 | 100 | Plus |
chrX | 22417052 | chrX | 20901556..20901627 | 223..294 | 360 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 21038743..21039078 | 391..726 | 1680 | 100 | Plus |
2L | 23513712 | 2L | 18454752..18455340 | 100..695 | 1635 | 86.2 | Plus |
X | 23542271 | X | 21035500..21035722 | 1..223 | 1115 | 100 | Plus |
X | 23542271 | X | 21036536..21036637 | 292..393 | 510 | 100 | Plus |
X | 23542271 | X | 21036399..21036470 | 223..294 | 360 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 21023835..21024170 | 391..726 | 1680 | 100 | Plus |
2L | 23513712 | 2L | 18454752..18455169 | 100..517 | 1595 | 92.1 | Plus |
X | 23527363 | X | 21020592..21020814 | 1..223 | 1115 | 100 | Plus |
X | 23527363 | X | 21021628..21021729 | 292..393 | 510 | 100 | Plus |
X | 23527363 | X | 21021491..21021562 | 223..294 | 360 | 100 | Plus |
2L | 23513712 | 2L | 18455232..18455340 | 583..695 | 245 | 84 | Plus |
2L | 23513712 | 2L | 18455182..18455218 | 544..580 | 170 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
BS3 | 1790 | BS3 BS3 1790bp | 1638..1692 | 721..666 | 115 | 69.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 20900657..20900878 | 1..222 | 100 | -> | Plus |
chrX | 20901556..20901627 | 223..294 | 100 | -> | Plus |
chrX | 20901696..20901794 | 295..393 | 100 | -> | Plus |
chrX | 20903903..20904233 | 394..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 1..393 | 115..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 1..393 | 115..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 1..393 | 115..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 1..393 | 115..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 1..393 | 115..507 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 27..750 | 1..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 27..750 | 1..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 32..755 | 1..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 27..750 | 1..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ntf-2-RA | 32..755 | 1..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21035500..21035721 | 1..222 | 100 | -> | Plus |
X | 21036399..21036470 | 223..294 | 100 | -> | Plus |
X | 21036539..21036637 | 295..393 | 100 | -> | Plus |
X | 21038746..21039076 | 394..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21035500..21035721 | 1..222 | 100 | -> | Plus |
X | 21036399..21036470 | 223..294 | 100 | -> | Plus |
X | 21036539..21036637 | 295..393 | 100 | -> | Plus |
X | 21038746..21039076 | 394..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21035500..21035721 | 1..222 | 100 | -> | Plus |
X | 21036399..21036470 | 223..294 | 100 | -> | Plus |
X | 21036539..21036637 | 295..393 | 100 | -> | Plus |
X | 21038746..21039076 | 394..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 20907566..20907664 | 295..393 | 100 | -> | Plus |
arm_X | 20906527..20906748 | 1..222 | 100 | -> | Plus |
arm_X | 20907426..20907497 | 223..294 | 100 | -> | Plus |
arm_X | 20909773..20910103 | 394..724 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 21020592..21020813 | 1..222 | 100 | -> | Plus |
X | 21021491..21021562 | 223..294 | 100 | -> | Plus |
X | 21021631..21021729 | 295..393 | 100 | -> | Plus |
X | 21023838..21024168 | 394..724 | 100 | Plus |
Translation from 114 to 506
> GM08921.hyp MSLNPQYEDIGKGFVQQYYAIFDDPANRANVVNFYSATDSFMTFEGHQIQ GAPKILEKVQSLSFQKITRVITTVDSQPTFDGGVLINVLGRLQCDDDPPH AFSQVFFLKANAGTFFVAHDIFRLNIHNSA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ntf-2-PE | 130 | CG1740-PE | 1..130 | 1..130 | 680 | 100 | Plus |
Ntf-2-PA | 130 | CG1740-PA | 1..130 | 1..130 | 680 | 100 | Plus |
Ntf-2r-PA | 130 | CG10174-PA | 1..130 | 1..130 | 594 | 87.7 | Plus |
Ntf-2-PB | 129 | CG1740-PB | 1..128 | 1..128 | 591 | 88.3 | Plus |
Ntf-2-PC | 89 | CG1740-PC | 1..89 | 42..130 | 462 | 100 | Plus |
Translation from 114 to 506
> GM08921.pep MSLNPQYEDIGKGFVQQYYAIFDDPANRANVVNFYSATDSFMTFEGHQIQ GAPKILEKVQSLSFQKITRVITTVDSQPTFDGGVLINVLGRLQCDDDPPH AFSQVFFLKANAGTFFVAHDIFRLNIHNSA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21708-PA | 165 | GF21708-PA | 1..165 | 1..130 | 630 | 77.6 | Plus |
Dana\GF23973-PA | 132 | GF23973-PA | 1..131 | 1..129 | 424 | 59.5 | Plus |
Dana\GF20049-PA | 126 | GF20049-PA | 1..125 | 1..126 | 336 | 50 | Plus |
Dana\GF17607-PA | 692 | GF17607-PA | 7..128 | 1..123 | 171 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\Ntf-2-PA | 165 | GG19703-PA | 1..165 | 1..130 | 624 | 77 | Plus |
Dere\GG19770-PA | 686 | GG19770-PA | 7..128 | 1..123 | 158 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16820-PA | 130 | GH16820-PA | 1..130 | 1..130 | 645 | 90 | Plus |
Dgri\GH12206-PA | 165 | GH12206-PA | 1..165 | 1..130 | 608 | 74.5 | Plus |
Dgri\GH18527-PA | 675 | GH18527-PA | 7..128 | 1..123 | 168 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ntf-2-PE | 130 | CG1740-PE | 1..130 | 1..130 | 680 | 100 | Plus |
Ntf-2-PA | 130 | CG1740-PA | 1..130 | 1..130 | 680 | 100 | Plus |
Ntf-2r-PA | 130 | CG10174-PA | 1..130 | 1..130 | 594 | 87.7 | Plus |
Ntf-2-PB | 129 | CG1740-PB | 1..128 | 1..128 | 591 | 88.3 | Plus |
Ntf-2-PC | 89 | CG1740-PC | 1..89 | 42..130 | 462 | 100 | Plus |
rin-PG | 690 | CG9412-PG | 8..128 | 2..123 | 173 | 32.5 | Plus |
rin-PF | 690 | CG9412-PF | 8..128 | 2..123 | 173 | 32.5 | Plus |
rin-PE | 690 | CG9412-PE | 8..128 | 2..123 | 173 | 32.5 | Plus |
rin-PB | 690 | CG9412-PB | 8..128 | 2..123 | 173 | 32.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15738-PA | 130 | GI15738-PA | 1..130 | 1..130 | 665 | 95.4 | Plus |
Dmoj\GI22064-PA | 651 | GI22064-PA | 7..128 | 1..123 | 170 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16396-PA | 165 | GL16396-PA | 1..165 | 1..130 | 607 | 73.9 | Plus |
Dper\GL18713-PA | 157 | GL18713-PA | 41..152 | 14..125 | 361 | 58.9 | Plus |
Dper\GL23542-PA | 697 | GL23542-PA | 7..128 | 1..123 | 165 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14503-PA | 165 | GA14503-PA | 1..165 | 1..130 | 605 | 73.3 | Plus |
Dpse\GA25766-PA | 130 | GA25766-PA | 1..125 | 1..125 | 387 | 56.8 | Plus |
Dpse\GA27297-PA | 696 | GA27297-PA | 7..128 | 1..123 | 165 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23057-PA | 130 | GM23057-PA | 1..130 | 1..130 | 670 | 97.7 | Plus |
Dsec\Ntf-2r-PA | 130 | GM17275-PA | 1..130 | 1..130 | 600 | 86.2 | Plus |
Dsec\GM24117-PA | 682 | GM24117-PA | 7..128 | 1..123 | 170 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Ntf-2-PA | 165 | GD17509-PA | 1..165 | 1..130 | 636 | 78.2 | Plus |
Dsim\Ntf-2r-PA | 130 | GD24139-PA | 1..130 | 1..130 | 615 | 87.7 | Plus |
Dsim\GD18916-PA | 669 | GD18916-PA | 7..128 | 1..123 | 170 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18599-PA | 130 | GJ18599-PA | 1..130 | 1..130 | 670 | 96.2 | Plus |
Dvir\GJ24112-PA | 651 | GJ24112-PA | 8..128 | 2..123 | 171 | 33.3 | Plus |