Clone GM09012 Report

Search the DGRC for GM09012

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:90
Well:12
Vector:pBS SK-
Associated Gene/TranscriptCG1764-RA
Protein status:GM09012.pep: gold
Preliminary Size:1558
Sequenced Size:1377

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1764 2001-01-01 Release 2 assignment
CG1764 2001-10-10 Blastp of sequenced clone
CG1764 2003-01-01 Sim4 clustering to Release 3
CG1764 2008-04-29 Release 5.5 accounting
CG1764 2008-08-15 Release 5.9 accounting
CG1764 2008-12-18 5.12 accounting

Clone Sequence Records

GM09012.complete Sequence

1377 bp (1377 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060959

> GM09012.complete
CTTCGCATCCGCATCTGCATCTGCATTCCGCCGCCGAGGACGAGCACCCA
GTGGCCAATCCGCCGACCATGTCGCCCAAGTACACACATGCGATTGTGGC
CAGAATCTCGGATGCCCTGCTGGAGAACGGAAAGTTCGACGTACAGCTGG
CCAAGCAGCAGCACGAGCAGTACTGCACCCTCCTGAGGACCATTGGTCTC
GATGTGATCGAGCTGCCGCCGGATGACCAGCTGCCCGAGGGCGTATTTGT
CGAGAACAGTGCGGTGATCTGTAACGGAGTGGCCCTGATCGGAAGATCGG
AGCATCCCAAGCGGCAACTCGAGGCCGAGAGCATGGCCATTATTCTCAAA
AAGGAGCTGGACATTCCGGTCATCGAGATCGAGGATCCGAACGCTCAGCT
CGATGGTGGCGATGTGCTTTTCACGGGTCGCGAATTCTTCGTTGGCATCT
CCAGTTTCACCAATGAGGAGGGAGCCCGGGCGGTGGCCATGGCCTATCCC
GAATATCCAGTGACGCCGATTCGGGTCAACGGCACCAAGAGGCTGAAGTA
CTATGTGACCATGGCGGGGCCGGAAGTGCTGTGTGTGAGCAGTAGCCCCA
CCTGCCAGGAGATCGTCAAGCGGATGGAGCGCGAGGCCATCTGCACCTAC
CAGAAGTTGACTCTGCCCGAGGAGAGTGCGGCCAATATGCTGTACATCAA
TGGAACGATCGTGCACAGATCCCCAACGGAAATTCCAGAAGCCTACAAGA
CTTTAAAAGAGAAAATCGACATTCCAACACGCAACATAAATATAAGTGAA
TTTAGCCAATATTCCAGTGGTCTGACCTCGTCGTGTTTGTTGCTGCGACG
CTGGAAGTCCATACGGAGCTTGTGAATCTCTCTGGGAGCCGAGAGGTTCA
ACCGACCGGAGTGAGAAGCATTGCCATGAGAAACATGCACAACAGGCCCA
AGGAGCAGGATACTGCATGCATTCCCTGCTCTGTCCAGGCATCAGCAAAA
TTGTATTATCTTATTATAGTTTATACACACCATCTCTTGTTATTGTTACA
CAATTAAGATTAAACCTTTGACGCTAATCAAACTGATTGTCGCTGAGGCG
TCGCTGCTGTTACTTTCCAGCTCATTGTTATTTTATAGGTTGTGTAATTC
AATCAGAGTTGGAAAGTATCATCGCCGTCGACGTCCAGATAGATGATCGC
CATTCCTCCTCCACTCACAATCCATGACGATGTTGAACGGATATCATTGT
ATTAATATGGTAAAATTACTATTATGAATTGTATCTACTTTACAAGTAGT
TTGTTGAATGTGTTCACTGTCTGTCCTCGAAATAAATGCAACATTTGTAA
TCTCTTCTTAAAAAAAAAAAAAAAAAA

GM09012.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-RA 1514 CG1764-RA 138..1506 1..1369 6830 99.9 Plus
CG1764.a 1714 CG1764.a 277..1025 1..749 3745 100 Plus
CG1764.a 1714 CG1764.a 1085..1706 748..1369 3095 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 13185302..13185913 1359..748 3060 100 Minus
chrX 22417052 chrX 13186502..13186828 428..102 1635 100 Minus
chrX 22417052 chrX 13185973..13186198 749..524 1130 100 Minus
chrX 22417052 chrX 13187328..13187430 103..1 515 100 Minus
chrX 22417052 chrX 13186340..13186440 526..426 505 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:20:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13294477..13295098 1369..748 3095 99.8 Minus
X 23542271 X 13295687..13296013 428..102 1635 100 Minus
X 23542271 X 13295158..13295383 749..524 1130 100 Minus
X 23542271 X 13296513..13296615 103..1 515 100 Minus
X 23542271 X 13295525..13295625 526..426 505 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 13302575..13303196 1369..748 3095 99.8 Minus
X 23527363 X 13303785..13304111 428..102 1635 100 Minus
X 23527363 X 13303256..13303481 749..524 1130 100 Minus
X 23527363 X 13304611..13304713 103..1 515 100 Minus
X 23527363 X 13303623..13303723 526..426 505 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:45:10 has no hits.

GM09012.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:46:05 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 13185302..13185911 750..1359 100 <- Minus
chrX 13185973..13186197 525..749 100 <- Minus
chrX 13186342..13186439 427..524 100 <- Minus
chrX 13186504..13186826 104..426 100 <- Minus
chrX 13187328..13187430 1..103 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:06:04 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 1..807 69..875 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:42:55 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 1..807 69..875 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:26 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 1..807 69..875 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:11:47 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 1..807 69..875 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:23:20 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 1..807 69..875 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:25:19 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 37..1395 1..1359 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:55 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 37..1395 1..1359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:26 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 408..1766 1..1359 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:11:47 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RA 37..1395 1..1359 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:23:20 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
CG1764-RB 408..1766 1..1359 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:05 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
X 13294487..13295096 750..1359 99 <- Minus
X 13295158..13295382 525..749 100 <- Minus
X 13295527..13295624 427..524 100 <- Minus
X 13295689..13296011 104..426 100 <- Minus
X 13296513..13296615 1..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:05 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
X 13294487..13295096 750..1359 99 <- Minus
X 13295158..13295382 525..749 100 <- Minus
X 13295527..13295624 427..524 100 <- Minus
X 13295689..13296011 104..426 100 <- Minus
X 13296513..13296615 1..103 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:46:05 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
X 13294487..13295096 750..1359 99 <- Minus
X 13295158..13295382 525..749 100 <- Minus
X 13295527..13295624 427..524 100 <- Minus
X 13295689..13296011 104..426 100 <- Minus
X 13296513..13296615 1..103 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:26 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13189191..13189415 525..749 100 <- Minus
arm_X 13189560..13189657 427..524 100 <- Minus
arm_X 13189722..13190044 104..426 100 <- Minus
arm_X 13190546..13190648 1..103 100   Minus
arm_X 13188520..13189129 750..1359 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:48:09 Download gff for GM09012.complete
Subject Subject Range Query Range Percent Splice Strand
X 13302585..13303194 750..1359 99 <- Minus
X 13303256..13303480 525..749 100 <- Minus
X 13303625..13303722 427..524 100 <- Minus
X 13303787..13304109 104..426 100 <- Minus
X 13304611..13304713 1..103 100   Minus

GM09012.hyp Sequence

Translation from 2 to 874

> GM09012.hyp
SHPHLHLHSAAEDEHPVANPPTMSPKYTHAIVARISDALLENGKFDVQLA
KQQHEQYCTLLRTIGLDVIELPPDDQLPEGVFVENSAVICNGVALIGRSE
HPKRQLEAESMAIILKKELDIPVIEIEDPNAQLDGGDVLFTGREFFVGIS
SFTNEEGARAVAMAYPEYPVTPIRVNGTKRLKYYVTMAGPEVLCVSSSPT
CQEIVKRMEREAICTYQKLTLPEESAANMLYINGTIVHRSPTEIPEAYKT
LKEKIDIPTRNINISEFSQYSSGLTSSCLLLRRWKSIRSL*

GM09012.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-PA 268 CG1764-PA 1..268 23..290 1371 100 Plus
CG1764-PB 268 CG1764-PB 1..268 23..290 1371 100 Plus

GM09012.pep Sequence

Translation from 68 to 874

> GM09012.pep
MSPKYTHAIVARISDALLENGKFDVQLAKQQHEQYCTLLRTIGLDVIELP
PDDQLPEGVFVENSAVICNGVALIGRSEHPKRQLEAESMAIILKKELDIP
VIEIEDPNAQLDGGDVLFTGREFFVGISSFTNEEGARAVAMAYPEYPVTP
IRVNGTKRLKYYVTMAGPEVLCVSSSPTCQEIVKRMEREAICTYQKLTLP
EESAANMLYINGTIVHRSPTEIPEAYKTLKEKIDIPTRNINISEFSQYSS
GLTSSCLLLRRWKSIRSL*

GM09012.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21405-PA 268 GF21405-PA 1..268 1..268 1320 91.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19510-PA 268 GG19510-PA 1..268 1..268 1372 96.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24350-PA 268 GH24350-PA 1..268 1..268 1281 88.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1764-PA 268 CG1764-PA 1..268 1..268 1371 100 Plus
CG1764-PB 268 CG1764-PB 1..268 1..268 1371 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11004-PA 268 GI11004-PA 1..268 1..268 1311 91.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18337-PA 228 GL18337-PA 1..228 1..268 1012 74.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14591-PA 268 GA14591-PA 1..268 1..268 1259 88.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11497-PA 268 GM11497-PA 1..268 1..268 1405 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15603-PA 268 GJ15603-PA 1..268 1..268 1299 90.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10109-PA 268 GK10109-PA 1..268 1..268 1306 91.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:46:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16164-PA 268 GE16164-PA 1..268 1..268 1373 96.3 Plus