BDGP Sequence Production Resources |
Search the DGRC for GM09489
Library: | GM |
Tissue Source: | Drosophila melanogaster ovary |
Created by: | Ling Hong |
Date Registered: | 1997-11-24 |
Comments: | Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-) |
Original Plate Number: | 94 |
Well: | 89 |
Vector: | pBS SK- |
Associated Gene/Transcript | Srp54k-RA |
Protein status: | GM09489.pep: gold |
Preliminary Size: | 2002 |
Sequenced Size: | 2031 |
Gene | Date | Evidence |
---|---|---|
CG4659 | 2000-02-14 | Blastp of sequenced clone |
CG4659 | 2001-01-01 | Release 2 assignment |
CG4659 | 2003-01-01 | Sim4 clustering to Release 3 |
Srp54k | 2008-04-29 | Release 5.5 accounting |
Srp54k | 2008-08-15 | Release 5.9 accounting |
Srp54k | 2008-12-18 | 5.12 accounting |
2031 bp (2031 high quality bases) assembled on 2000-02-14
GenBank Submission: AF160891
> GM09489.complete CAGTGGTCAGCAGTCTCTTCTTCTTCCACATCGACGTGTCGTGTCAGCCA AAAGAAAGTCGAAATAAAATATTGAATTGAAGCTGCCCCTTTGCGAGTAG GCCCGACAAAATTCAGAAGCTGCCAGTCGTCCGTACGCCAAACCACACAC AACCACCACCGGCAAGATGGTTCTCGCGGATTTGGGTCGCAAGATAACAA CGGCGCTGCACTCGCTCAGCAAGGCGACCGTAATCAATGAGGAGGCACTG AATTCCATGCTGAAGGAGATCTGCGCAGCGCTCCTGGAGGCTGATGTGAA TATCCGACTGGTTAAGCAGCTGCGCGAGAATGTGCGTGCCGTTATTGATT TCGATGAGATGGCCGGTGGCCTGAACAAGAGGCGAATGATCCAATCGGCT GTGTTCAAGGAGCTCGTCAAACTGGTCGATCCCGGCGTGAAACCCTACCA ACCCATCAAGGGCAAGGCCAATGTGGTCATGTTTGTGGGTCTGCAGGGCT CCGGTAAGACCACCACCTGTACCAAGCTGGCCTATCACTACCAGAAGCGC AACTGGAAGTCGTGTCTCGTGTGCGCGGATACCTTCCGTGCTGGTGCTTA CGATCAGGTCAAGCAGAACGCCACCAAGGCGCGCATTCCGTTCTACGGCA GCTACACGGAAATCGATCCCGTGGTCATTGCCCAGGACGGTGTGGATATG TTCAAACGCGAGGGTTTCGAGATGATCATTGTGGACACCTCGGGTCGGCA CAAGCAGGAGGAATCACTGTTCGAGGAGATGTTGGCAGTGTCCAATGCCG TCAGTCCCGACAACATAATCTTCGTGATGGACGCCACCATCGGACAGGCT TGCGAGGCTCAAGCGAAAGCCTTCAAAGACAAGGTGGACATCGGTTCGGT GATCATAACCAAGTTGGATGGCCACGCCAAGGGAGGCGGAGCTCTGTCCG CAGTGGCAGCCACACAGTCGCCCATCATCTTCATCGGTACGGGCGAACAC ATCGACGATCTGGAGCCGTTCAAGACGAAACCCTTTGTGAGCAAACTGCT TGGAATGGGTGACATCGAAGGACTGATAGATAAGGTAAACGAGCTGAAGC TAGACGGAAACGATGAGCTGTTAGAAAAGATCAAGCACGGTCATTTCACC ATCCGCGACATGTACGAGCAGTTCCAGAACATCATGAAGATGGGCCCCTT CTCCCAGTTCATGAACATGATACCCGGTTTCTCGCAGGACTTTATGACCA AGGGCGGCGAACAGGAGTCGATGGCGCGCGTTAAGCGTATGATGACGATG ATGGACAGTATGTCGGATAATGAACTGGACAATCGCGACGGAGCAAAGCT CTTTAGCAAGCAGCCAAACCGCTGCGTTCGTGTGGCCCAGGGAGCTGGTG TCATGGAGCGCGAGGTCAAGGAACTGATTGCACACTATACGAAATTTTCG GCGGTAGTAAAGAAGATGGGCGGCGTTAAGGGACTGTTCAAGCAGGGCGA CATGACCAAGAATGTGAATCCAACACAGATGGCCAAGCTCAACCAGCAGA TAGCGAAGATGATCGATCCCCGGATGCTGCAACAGATGGGCGGCGTTGGT GGTATCCAGAACATGATGAGGCAACTGCAGCAGGGAGCTGCGGGCGGTTT GGGTGGCCTGGGGAACCTGATGAGCGGCTTTGGTGGCAAGTGAGCAGGTG GCGTGTAAATTTAACGATTTTTATATGATTTTGTTTTCGCGTAGTTCGTA ATTTGTTAGCCATTTGTTTCCATTTGTCCAAGGCCACAAAAATTGATATG CGTTGTGGAAGCGAATATAGCGTATATAGCCTATAAAGCCCATATAGATG TGCAAACAGTTAACAAATTCGGTTTTTGTACGGCTTGGCAGCCACAGTGT CAGTTTTTATAGTTTAAACAGTTTTCTGTACACGAACTAATGGAATTAGC ATGCCTATCAGAATACCAGTAAGGCAATTGAACTAGATATAAACAATAAA TAAATAATATATGAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Srp54k-RA | 2163 | Srp54k-RA | 137..2151 | 1..2015 | 9895 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 2527..2627 | 1758..1658 | 145 | 60.4 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 5145232..5146315 | 1..1084 | 99 | -> | Plus |
chr3L | 5146401..5147329 | 1085..2013 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 1..1527 | 167..1693 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 1..1527 | 167..1693 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 1..1527 | 167..1693 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 1..1527 | 167..1693 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 1..1527 | 167..1693 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 112..2124 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 112..2124 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 3..2015 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 112..2124 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Srp54k-RA | 3..2015 | 1..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5152680..5153763 | 1..1084 | 99 | -> | Plus |
3L | 5153849..5154777 | 1085..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5152680..5153763 | 1..1084 | 99 | -> | Plus |
3L | 5153849..5154777 | 1085..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5152680..5153763 | 1..1084 | 99 | -> | Plus |
3L | 5153849..5154777 | 1085..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 5145780..5146863 | 1..1084 | 99 | -> | Plus |
arm_3L | 5146949..5147877 | 1085..2013 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 5145780..5146863 | 1..1084 | 99 | -> | Plus |
3L | 5146949..5147877 | 1085..2013 | 99 | Plus |
Translation from 166 to 1692
> GM09489.hyp MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVK QLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGK ANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQ NATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEES LFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKL DGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDI EGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQNIMKMGPFSQFMN MIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQP NRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNV NPTQMAKLNQQIAKMIDPRMLQQMGGVGGIQNMMRQLQQGAAGGLGGLGN LMSGFGGK*
Translation from 166 to 1692
> GM09489.pep MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVK QLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGK ANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQ NATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEES LFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKL DGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDI EGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQNIMKMGPFSQFMN MIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQP NRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNV NPTQMAKLNQQIAKMIDPRMLQQMGGVGGIQNMMRQLQQGAAGGLGGLGN LMSGFGGK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23972-PA | 508 | GF23972-PA | 1..508 | 1..508 | 2634 | 96.5 | Plus |
Dana\GF20395-PA | 628 | GF20395-PA | 329..627 | 28..295 | 202 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15264-PA | 508 | GG15264-PA | 1..508 | 1..508 | 2688 | 99.4 | Plus |
Dere\GG18880-PA | 615 | GG18880-PA | 316..614 | 28..295 | 202 | 22.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16182-PA | 508 | GH16182-PA | 1..485 | 1..485 | 2432 | 95.1 | Plus |
Dgri\GH24806-PA | 628 | GH24806-PA | 369..627 | 62..295 | 207 | 23.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Srp54k-PA | 508 | CG4659-PA | 1..508 | 1..508 | 2593 | 100 | Plus |
Gtp-bp-PA | 614 | CG2522-PA | 315..613 | 28..295 | 221 | 22.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13333-PA | 508 | GI13333-PA | 1..485 | 1..485 | 2441 | 95.3 | Plus |
Dmoj\GI21534-PA | 636 | GI21534-PA | 337..635 | 28..295 | 203 | 22.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22620-PA | 508 | GL22620-PA | 1..508 | 1..508 | 2629 | 96.1 | Plus |
Dper\GL27063-PA | 610 | GL27063-PA | 315..609 | 33..295 | 203 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18336-PA | 508 | GA18336-PA | 1..508 | 1..508 | 2629 | 96.1 | Plus |
Dpse\GA15385-PA | 621 | GA15385-PA | 323..620 | 25..295 | 207 | 22.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14699-PA | 508 | GM14699-PA | 1..508 | 1..508 | 2699 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13881-PA | 508 | GD13881-PA | 1..508 | 1..508 | 2684 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13160-PA | 508 | GJ13160-PA | 1..485 | 1..485 | 2455 | 95.9 | Plus |
Dvir\GJ16008-PA | 633 | GJ16008-PA | 334..632 | 28..295 | 208 | 22.7 | Plus |