Clone GM09489 Report

Search the DGRC for GM09489

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:94
Well:89
Vector:pBS SK-
Associated Gene/TranscriptSrp54k-RA
Protein status:GM09489.pep: gold
Preliminary Size:2002
Sequenced Size:2031

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4659 2000-02-14 Blastp of sequenced clone
CG4659 2001-01-01 Release 2 assignment
CG4659 2003-01-01 Sim4 clustering to Release 3
Srp54k 2008-04-29 Release 5.5 accounting
Srp54k 2008-08-15 Release 5.9 accounting
Srp54k 2008-12-18 5.12 accounting

Clone Sequence Records

GM09489.complete Sequence

2031 bp (2031 high quality bases) assembled on 2000-02-14

GenBank Submission: AF160891

> GM09489.complete
CAGTGGTCAGCAGTCTCTTCTTCTTCCACATCGACGTGTCGTGTCAGCCA
AAAGAAAGTCGAAATAAAATATTGAATTGAAGCTGCCCCTTTGCGAGTAG
GCCCGACAAAATTCAGAAGCTGCCAGTCGTCCGTACGCCAAACCACACAC
AACCACCACCGGCAAGATGGTTCTCGCGGATTTGGGTCGCAAGATAACAA
CGGCGCTGCACTCGCTCAGCAAGGCGACCGTAATCAATGAGGAGGCACTG
AATTCCATGCTGAAGGAGATCTGCGCAGCGCTCCTGGAGGCTGATGTGAA
TATCCGACTGGTTAAGCAGCTGCGCGAGAATGTGCGTGCCGTTATTGATT
TCGATGAGATGGCCGGTGGCCTGAACAAGAGGCGAATGATCCAATCGGCT
GTGTTCAAGGAGCTCGTCAAACTGGTCGATCCCGGCGTGAAACCCTACCA
ACCCATCAAGGGCAAGGCCAATGTGGTCATGTTTGTGGGTCTGCAGGGCT
CCGGTAAGACCACCACCTGTACCAAGCTGGCCTATCACTACCAGAAGCGC
AACTGGAAGTCGTGTCTCGTGTGCGCGGATACCTTCCGTGCTGGTGCTTA
CGATCAGGTCAAGCAGAACGCCACCAAGGCGCGCATTCCGTTCTACGGCA
GCTACACGGAAATCGATCCCGTGGTCATTGCCCAGGACGGTGTGGATATG
TTCAAACGCGAGGGTTTCGAGATGATCATTGTGGACACCTCGGGTCGGCA
CAAGCAGGAGGAATCACTGTTCGAGGAGATGTTGGCAGTGTCCAATGCCG
TCAGTCCCGACAACATAATCTTCGTGATGGACGCCACCATCGGACAGGCT
TGCGAGGCTCAAGCGAAAGCCTTCAAAGACAAGGTGGACATCGGTTCGGT
GATCATAACCAAGTTGGATGGCCACGCCAAGGGAGGCGGAGCTCTGTCCG
CAGTGGCAGCCACACAGTCGCCCATCATCTTCATCGGTACGGGCGAACAC
ATCGACGATCTGGAGCCGTTCAAGACGAAACCCTTTGTGAGCAAACTGCT
TGGAATGGGTGACATCGAAGGACTGATAGATAAGGTAAACGAGCTGAAGC
TAGACGGAAACGATGAGCTGTTAGAAAAGATCAAGCACGGTCATTTCACC
ATCCGCGACATGTACGAGCAGTTCCAGAACATCATGAAGATGGGCCCCTT
CTCCCAGTTCATGAACATGATACCCGGTTTCTCGCAGGACTTTATGACCA
AGGGCGGCGAACAGGAGTCGATGGCGCGCGTTAAGCGTATGATGACGATG
ATGGACAGTATGTCGGATAATGAACTGGACAATCGCGACGGAGCAAAGCT
CTTTAGCAAGCAGCCAAACCGCTGCGTTCGTGTGGCCCAGGGAGCTGGTG
TCATGGAGCGCGAGGTCAAGGAACTGATTGCACACTATACGAAATTTTCG
GCGGTAGTAAAGAAGATGGGCGGCGTTAAGGGACTGTTCAAGCAGGGCGA
CATGACCAAGAATGTGAATCCAACACAGATGGCCAAGCTCAACCAGCAGA
TAGCGAAGATGATCGATCCCCGGATGCTGCAACAGATGGGCGGCGTTGGT
GGTATCCAGAACATGATGAGGCAACTGCAGCAGGGAGCTGCGGGCGGTTT
GGGTGGCCTGGGGAACCTGATGAGCGGCTTTGGTGGCAAGTGAGCAGGTG
GCGTGTAAATTTAACGATTTTTATATGATTTTGTTTTCGCGTAGTTCGTA
ATTTGTTAGCCATTTGTTTCCATTTGTCCAAGGCCACAAAAATTGATATG
CGTTGTGGAAGCGAATATAGCGTATATAGCCTATAAAGCCCATATAGATG
TGCAAACAGTTAACAAATTCGGTTTTTGTACGGCTTGGCAGCCACAGTGT
CAGTTTTTATAGTTTAAACAGTTTTCTGTACACGAACTAATGGAATTAGC
ATGCCTATCAGAATACCAGTAAGGCAATTGAACTAGATATAAACAATAAA
TAAATAATATATGAAAAAAAAAAAAAAAAAA

GM09489.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54k-RA 2163 Srp54k-RA 137..2151 1..2015 9895 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5145232..5146317 1..1086 5325 99.4 Plus
chr3L 24539361 chr3L 5146399..5147329 1083..2013 4655 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:20:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5152680..5153765 1..1086 5355 99.5 Plus
3L 28110227 3L 5153847..5154779 1083..2015 4560 99.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5145780..5146865 1..1086 5355 99.5 Plus
3L 28103327 3L 5146947..5147879 1083..2015 4560 99.2 Plus
Blast to na_te.dros performed 2019-03-16 03:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy9 5349 gypsy9 GYPSY9 5349bp 2527..2627 1758..1658 145 60.4 Minus

GM09489.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:23:29 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5145232..5146315 1..1084 99 -> Plus
chr3L 5146401..5147329 1085..2013 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:06:21 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 1..1527 167..1693 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:32:23 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 1..1527 167..1693 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:57:33 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 1..1527 167..1693 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:06:28 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 1..1527 167..1693 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:36:43 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 1..1527 167..1693 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:34:08 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 112..2124 1..2013 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:32:22 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 112..2124 1..2013 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:57:33 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 3..2015 1..2013 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:06:28 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 112..2124 1..2013 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:36:43 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
Srp54k-RA 3..2015 1..2013 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:29 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5152680..5153763 1..1084 99 -> Plus
3L 5153849..5154777 1085..2013 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:29 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5152680..5153763 1..1084 99 -> Plus
3L 5153849..5154777 1085..2013 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:23:29 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5152680..5153763 1..1084 99 -> Plus
3L 5153849..5154777 1085..2013 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:57:33 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5145780..5146863 1..1084 99 -> Plus
arm_3L 5146949..5147877 1085..2013 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:44:20 Download gff for GM09489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5145780..5146863 1..1084 99 -> Plus
3L 5146949..5147877 1085..2013 99   Plus

GM09489.hyp Sequence

Translation from 166 to 1692

> GM09489.hyp
MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVK
QLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGK
ANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQ
NATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEES
LFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKL
DGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDI
EGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQNIMKMGPFSQFMN
MIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQP
NRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNV
NPTQMAKLNQQIAKMIDPRMLQQMGGVGGIQNMMRQLQQGAAGGLGGLGN
LMSGFGGK*

GM09489.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54k-PA 508 CG4659-PA 1..508 1..508 2593 100 Plus
Gtp-bp-PA 614 CG2522-PA 315..613 28..295 221 22.7 Plus

GM09489.pep Sequence

Translation from 166 to 1692

> GM09489.pep
MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVK
QLRENVRAVIDFDEMAGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGK
ANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQ
NATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRHKQEES
LFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKL
DGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDI
EGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQNIMKMGPFSQFMN
MIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFSKQP
NRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNV
NPTQMAKLNQQIAKMIDPRMLQQMGGVGGIQNMMRQLQQGAAGGLGGLGN
LMSGFGGK*

GM09489.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 15:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23972-PA 508 GF23972-PA 1..508 1..508 2634 96.5 Plus
Dana\GF20395-PA 628 GF20395-PA 329..627 28..295 202 23.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 15:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15264-PA 508 GG15264-PA 1..508 1..508 2688 99.4 Plus
Dere\GG18880-PA 615 GG18880-PA 316..614 28..295 202 22.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 15:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16182-PA 508 GH16182-PA 1..485 1..485 2432 95.1 Plus
Dgri\GH24806-PA 628 GH24806-PA 369..627 62..295 207 23.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Srp54k-PA 508 CG4659-PA 1..508 1..508 2593 100 Plus
Gtp-bp-PA 614 CG2522-PA 315..613 28..295 221 22.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 15:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13333-PA 508 GI13333-PA 1..485 1..485 2441 95.3 Plus
Dmoj\GI21534-PA 636 GI21534-PA 337..635 28..295 203 22.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 15:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22620-PA 508 GL22620-PA 1..508 1..508 2629 96.1 Plus
Dper\GL27063-PA 610 GL27063-PA 315..609 33..295 203 23.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 15:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18336-PA 508 GA18336-PA 1..508 1..508 2629 96.1 Plus
Dpse\GA15385-PA 621 GA15385-PA 323..620 25..295 207 22.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 15:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14699-PA 508 GM14699-PA 1..508 1..508 2699 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 15:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13881-PA 508 GD13881-PA 1..508 1..508 2684 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 15:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13160-PA 508 GJ13160-PA 1..485 1..485 2455 95.9 Plus
Dvir\GJ16008-PA 633 GJ16008-PA 334..632 28..295 208 22.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 15:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20323-PA 508 GK20323-PA 1..508 1..508 2627 96.1 Plus
Dwil\GK16226-PA 624 GK16226-PA 317..623 20..295 209 22.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 15:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21487-PA 508 GE21487-PA 1..508 1..508 2682 99.2 Plus
Dyak\Gtp-bp-PA 617 GE17321-PA 318..616 28..295 202 22.1 Plus