Clone GM09977 Report

Search the DGRC for GM09977

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:99
Well:77
Vector:pBS SK-
Associated Gene/TranscriptCG8209-RA
Protein status:GM09977.pep: gold
Preliminary Size:1638
Sequenced Size:1513

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8209 2001-01-01 Release 2 assignment
CG8209 2001-11-09 Blastp of sequenced clone
CG8209 2003-01-01 Sim4 clustering to Release 3
CG8209 2008-04-29 Release 5.5 accounting
CG8209 2008-08-15 Release 5.9 accounting
CG8209 2008-12-18 5.12 accounting

Clone Sequence Records

GM09977.complete Sequence

1513 bp (1513 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069272

> GM09977.complete
CATAGCTGCATGTGCACTTCGTATAATACAAGCTAAATAATAATTATTGC
TATTAATTATTAGAAACTGTATGTACCTGCAATTTTTCATATGCAACGCT
TACTATATATTTAAAATTTATATTATATTTAAAACTATTTATTTATCATT
TTTGTTTGCCATAGCTGCAACTATTGCATTACACCGATATATACCACGGG
TCGAGCTATCGATAGTTATCCATCTCGCCTGGCTTTGTTTTTGTGTGTCA
TTGTTAATTTTTCGTTTTCATAAATATACGAAACTGAACTATTAATTTTT
GGGACGCAATCAGCCAACGCTATGAGTGAAGTGCAGACATTGATGGATAT
GGGATTCCCTCGGGAACGTGTTGAATATGCACTGGAGGTGACCAGTAACA
AGGGCGTAGAACCGGCAATGGAGTGGCTGCTGGCCCACGTGGATGATCCA
ATACCATCCCGTCAAGGTGCCGGCGAATCCCCTGGTTCCACAGCTCAACC
AGCTGCGGCTGTGGATTCCTCGGCCGCAGCAGCTTCCAGTAGCACTAGTG
GCGCAGGTGAAACCTCTGCTCCGGTAGCCAAGTCCCTGAAGTGCGACGAA
TGCGGCAAAGTTCTTAGAGATCACACCGAAGTGGAGTACCATGCCGCCAA
AACCGGTCACACCAAATTCTCCGAATCGGAGGAGGAAAAGAAGGCGCTCA
CCGAGGAGGAGAAGAAGGCCCAGCTGGCCCTCATCGAGGAGAAGCTCAAG
CAGAAACGCATCGAACGCGAGGAGCGCGAGAAAATCGAAGCTCTGCAACG
GGAAAAGAATCGCATCAAGTCCGGCAAGGACATGACCGAGGCCAAGCGGC
GCATGGAGGAGTTGGAGATGAAGAAGATCGTTGAGCAGCGCAAGCGCGAA
AAGGACGAGGAGAAGGCGGCCCGCGATCGGGTAAAGGCTCAAATTGAGGC
GGACAAGGCAGCACGCAAGGCTAGAGAACAAAAGGAATTGGGCAACGCAG
AGCCAGCTCCATCCGTGAGCTCCACCACAGTTTCGTCACCACCGGCCGGT
GTGAAATCTCCGCCGCGAGACTACACCGAAACCCGCATCCAGGTGCGCCT
GCAGGATGGCTCAACACTACAGGAAACCTTCAACGTCAAGGAGCAGCTGT
CCGCCGTACGTGTGTTCATCCAGATGAAGACCGGCATCGAGTCGCCCTTC
TCTCTGATGACCACCTTTCCGCGCAAGCTGTTCGCCGAGGACGACTACGA
GAAGCCGCTGGAAGTGCTCGGCTTGGTTCCATCCGCTGTCATCACCATGA
CCAAGACGCCCGCATAAATCTTTCCTACAAACTGGATATATTTGAATCCG
GGTAATCTCTCCCATAAACTAGAACCTAAATACGAAAAAAACGCGGCGCG
AAATATACCCCCCCCCCCCCAAAAAAAAAAAAAAAACAAGAAAAACAATT
AATGTACGGTTTTATATATATATTAAACACAACAATCTCAAATACAAAAA
AAAAAAAAAAAAA

GM09977.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-RA 1335 CG8209-RA 1..1335 100..1434 6630 99.7 Plus
CG8038-RA 835 CG8038-RA 789..835 1497..1451 235 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:47:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7968825..7969427 372..974 2985 99.7 Plus
chr3L 24539361 chr3L 7969482..7970005 973..1494 2495 98.9 Plus
chr3L 24539361 chr3L 7968460..7968731 100..371 1360 100 Plus
chr3L 24539361 chr3L 7970870..7970969 1..100 485 99 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:20:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7976668..7977270 372..974 2970 99.5 Plus
3L 28110227 3L 7977325..7977851 973..1497 2570 99.6 Plus
3L 28110227 3L 7976303..7976574 100..371 1360 100 Plus
3L 28110227 3L 7978713..7978812 1..100 485 99 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7969768..7970370 372..974 2970 99.5 Plus
3L 28103327 3L 7970425..7970951 973..1497 2580 99.6 Plus
3L 28103327 3L 7969403..7969674 100..371 1360 100 Plus
3L 28103327 3L 7971813..7971912 1..100 485 99 Plus
Blast to na_te.dros performed 2019-03-15 21:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 6756..6869 150..37 121 60.2 Minus
Stalker 7256 Stalker STALKER 7256bp 6648..6761 150..37 121 60.2 Minus
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5827..5868 701..742 120 76.2 Plus

GM09977.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:48:47 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7968507..7968731 147..371 100 -> Plus
chr3L 7968825..7969427 372..974 99 -> Plus
chr3L 7969484..7970005 975..1495 93   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:06:31 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..996 322..1317 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:43 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..996 322..1317 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:58:23 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..996 322..1317 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:20 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..996 322..1317 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:56 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..996 322..1317 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:21 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..1398 100..1495 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:43 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..1398 100..1495 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:58:23 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..1295 203..1495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:20 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..1398 100..1495 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:56 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
CG8209-RA 1..1295 203..1495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:47 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7976303..7976574 100..371 100 -> Plus
3L 7976668..7977270 372..974 99 -> Plus
3L 7977327..7977849 975..1495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:47 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7976303..7976574 100..371 100 -> Plus
3L 7976668..7977270 372..974 99 -> Plus
3L 7977327..7977849 975..1495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:48:47 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7976303..7976574 100..371 100 -> Plus
3L 7976668..7977270 372..974 99 -> Plus
3L 7977327..7977849 975..1495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:58:23 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7969403..7969674 100..371 100 -> Plus
arm_3L 7969768..7970370 372..974 99 -> Plus
arm_3L 7970427..7970949 975..1495 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:36 Download gff for GM09977.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7969403..7969674 100..371 100 -> Plus
3L 7969768..7970370 372..974 99 -> Plus
3L 7970427..7970949 975..1495 99   Plus

GM09977.pep Sequence

Translation from 321 to 1316

> GM09977.pep
MSEVQTLMDMGFPRERVEYALEVTSNKGVEPAMEWLLAHVDDPIPSRQGA
GESPGSTAQPAAAVDSSAAAASSSTSGAGETSAPVAKSLKCDECGKVLRD
HTEVEYHAAKTGHTKFSESEEEKKALTEEEKKAQLALIEEKLKQKRIERE
EREKIEALQREKNRIKSGKDMTEAKRRMEELEMKKIVEQRKREKDEEKAA
RDRVKAQIEADKAARKAREQKELGNAEPAPSVSSTTVSSPPAGVKSPPRD
YTETRIQVRLQDGSTLQETFNVKEQLSAVRVFIQMKTGIESPFSLMTTFP
RKLFAEDDYEKPLEVLGLVPSAVITMTKTPA*

GM09977.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23804-PA 331 GF23804-PA 1..331 1..331 1303 82.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14459-PA 331 GG14459-PA 1..331 1..331 1669 97 Plus
Dere\GG14929-PA 654 GG14929-PA 306..472 159..324 202 35.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14985-PA 327 GH14985-PA 1..327 1..331 1198 72.8 Plus
Dgri\GH16507-PA 632 GH16507-PA 267..466 127..324 203 34.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-PA 331 CG8209-PA 1..331 1..331 1649 100 Plus
CG8042-PA 656 CG8042-PA 206..474 46..324 278 32.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13147-PA 326 GI13147-PA 1..326 1..331 1207 73.8 Plus
Dmoj\GI12185-PA 744 GI12185-PA 427..572 183..324 158 32.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17818-PA 664 GL17818-PA 316..472 164..324 175 31.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20900-PA 339 GA20900-PA 1..339 1..331 1237 75.4 Plus
Dpse\GA30080-PA 323 GA30080-PA 1..320 1..328 1111 67.7 Plus
Dpse\GA20784-PA 676 GA20784-PA 328..484 164..324 175 32.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25009-PA 331 GM25009-PA 1..331 1..331 1704 98.8 Plus
Dsec\GM24979-PA 657 GM24979-PA 274..475 122..324 204 34.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14045-PA 331 GD14045-PA 1..331 1..331 1701 98.8 Plus
Dsim\GD13028-PA 656 GD13028-PA 274..475 122..324 203 36.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13896-PA 321 GJ13896-PA 1..321 1..331 1157 71.9 Plus
Dvir\GJ11421-PA 644 GJ11421-PA 277..477 124..328 177 32.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20587-PA 335 GK20587-PA 1..335 1..331 1138 71.3 Plus
Dwil\GK11003-PA 653 GK11003-PA 295..493 119..328 166 29.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21649-PA 331 GE21649-PA 1..331 1..331 1682 97.3 Plus
Dyak\GE20381-PA 659 GE20381-PA 316..479 164..326 209 36.9 Plus

GM09977.hyp Sequence

Translation from 321 to 1316

> GM09977.hyp
MSEVQTLMDMGFPRERVEYALEVTSNKGVEPAMEWLLAHVDDPIPSRQGA
GESPGSTAQPAAAVDSSAAAASSSTSGAGETSAPVAKSLKCDECGKVLRD
HTEVEYHAAKTGHTKFSESEEEKKALTEEEKKAQLALIEEKLKQKRIERE
EREKIEALQREKNRIKSGKDMTEAKRRMEELEMKKIVEQRKREKDEEKAA
RDRVKAQIEADKAARKAREQKELGNAEPAPSVSSTTVSSPPAGVKSPPRD
YTETRIQVRLQDGSTLQETFNVKEQLSAVRVFIQMKTGIESPFSLMTTFP
RKLFAEDDYEKPLEVLGLVPSAVITMTKTPA*

GM09977.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8209-PA 331 CG8209-PA 1..331 1..331 1649 100 Plus
CG8042-PA 656 CG8042-PA 206..474 46..324 278 32.3 Plus