Clone GM10285 Report

Search the DGRC for GM10285

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:102
Well:85
Vector:pBS SK-
Associated Gene/TranscriptCG17270-RA
Protein status:GM10285.pep: gold
Preliminary Size:1494
Sequenced Size:1400

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17270 2001-01-01 Release 2 assignment
CG17270 2001-11-09 Blastp of sequenced clone
CG17270 2003-01-01 Sim4 clustering to Release 3
CG17270 2008-04-29 Release 5.5 accounting
CG17270 2008-08-15 Release 5.9 accounting
CG17270 2008-12-18 5.12 accounting

Clone Sequence Records

GM10285.complete Sequence

1400 bp (1400 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069274

> GM10285.complete
AAGGCGTTGCAGGCGGCGGTACGAGAATCGGTCGCGTTTACAGCTGAACG
GCGAAAATATACATATATGAAATAAACAATCGCTGCTGCATAAAATAGGT
TTTTGAGGGACTCAAGAGTGCCCCAGTGGCAGTGCTGCAAACAAATATTA
CGCATACGCCGGGTGGGACGGATCGCGGTACTGCTGATTAACACGGGAAT
CTTTGCAAAATGGCTGCCATGCAGTCTGGCGGACGACCCCGCGAGCGATT
GCTGTACGCCTTCCGGGGATGGATAGCATTCGTGGCCTTTATGGACCTGG
GCACGGCCTTTAGGAGCTACATAGAAAGACGCAGCTTCCTGGGCGATCAC
AGCGACACCCAGTTCATAGAGGGGGACTACACCATATCGCGGATCATCGG
GATGTACTGCCTGCTGAAGGCCATCGCTCTCGTCCACTGCACCCTCTACA
TTCACTACAAGCCGGTGGTCAGCATGGGCGGCTGCTCATTGGCCCTCACC
ATGGTCTTCTATGCCACCGAGGCACTCTACTTTCGCTCAAGCACCATTAA
CTTCTACGTGATCTTCCCGTGTGTGCTAAATTCTATAACTCTACTGGGCC
TCATCTACATACCCAAACGACTGCGGCTCTGGGAGCCAAATATGGATCTG
GATGACGAAAACTCACAGCTGCTCAAGCAAATGACGGGCTTCAAGAGACG
ACGAGCGAAAAAACAATAGTTTATTACTATCTAGAAATATGAAAAGCAAT
AACCGGAAGACACTGAGTTGAGTTTCCGGTAGCACAGTATTGTGAAAGAA
TCGCAAATTTCGCTTTGGACTGCATTGGTGTGATAGAATCGGCATCATGT
TCATCATTATATATACTCAATAGCAATACTAAAAACAACGCCAAATTAGT
GATTTTCTATGAACTAGGTAGTGAAGGGTCTAAATGGCCCCGGAATAAGT
CAATTTCTGGCATAATCACTTCAAGACATACATATGTTGTACTTCCTTTT
TTTATAAAGCGTATTTATATACATTTAAAAATGTATGGCACAATAGAGTT
TTTGCACTTTTAAGAGTTGAAAATCGATACTAGGAAATATTTATCTAATT
ATCAGAGACATCTAGCACCCGAGTTAAATAATTAAAATCGAAAGGCTTTA
AATTAACAAATAAGCTCATAATCATCATATTTACATATACGATTATCAAT
TTATGGATCATGCTTCCATATCGATCATAAAATTAAGGAACATTTTATAG
TCATTACGTATGATTGAATGTTATGTAAACCTAAAAAAAAAAAAAATACA
ATAATAGTTTTGTACGAATTATGTAGATTATGTTTCAATAAAAATTTGAA
TTGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GM10285.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-RA 1481 CG17270-RA 128..1481 1..1359 6480 98.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:45:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16640360..16641129 1355..583 3660 98.8 Minus
chr3R 27901430 chr3R 16642623..16642832 212..1 965 98.1 Minus
chr3R 27901430 chr3R 16641554..16641715 373..212 795 99.4 Minus
chr3R 27901430 chr3R 16641224..16641342 582..464 580 99.2 Minus
chr3R 27901430 chr3R 16641409..16641501 464..372 465 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20816441..20817214 1359..583 3665 98.7 Minus
3R 32079331 3R 20818708..20818917 212..1 965 98.1 Minus
3R 32079331 3R 20817639..20817800 373..212 795 99.4 Minus
3R 32079331 3R 20817309..20817427 582..464 580 99.2 Minus
3R 32079331 3R 20817494..20817586 464..372 465 100 Minus
2R 25286936 2R 2169228..2169282 1339..1393 215 92.7 Plus
U 3151297 U 63357..63409 1391..1339 190 90.6 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:22:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20557272..20558045 1359..583 3685 98.7 Minus
3R 31820162 3R 20559539..20559748 212..1 975 98.1 Minus
3R 31820162 3R 20558470..20558631 373..212 795 99.3 Minus
3R 31820162 3R 20558140..20558258 582..464 580 99.1 Minus
3R 31820162 3R 20558325..20558417 464..372 465 100 Minus
2R 25260384 2R 2169228..2169282 1339..1393 215 92.7 Plus
Unmapped_scaffold_04 86267 Unmapped_scaffold_04 63357..63409 1391..1339 190 90.5 Minus
Blast to na_te.dros performed on 2019-03-16 09:45:43 has no hits.

GM10285.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:46:47 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16640360..16641129 583..1355 98 <- Minus
chr3R 16641224..16641342 464..582 99 <- Minus
chr3R 16641410..16641500 373..463 100 <- Minus
chr3R 16641555..16641715 212..372 99 <- Minus
chr3R 16642624..16642832 1..211 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:06:45 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 1..510 210..719 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:29:44 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 1..510 210..719 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:51:28 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 1..510 210..719 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:57:21 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 1..510 210..719 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:37 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 1..510 210..719 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:07:23 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 8..1357 1..1355 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:29:44 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 8..1357 1..1355 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:51:28 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 13..1362 1..1355 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:57:21 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 8..1357 1..1355 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:37 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
CG17270-RA 13..1362 1..1355 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:47 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20816445..20817214 583..1355 98 <- Minus
3R 20817309..20817427 464..582 99 <- Minus
3R 20817495..20817585 373..463 100 <- Minus
3R 20817640..20817800 212..372 99 <- Minus
3R 20818709..20818917 1..211 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:47 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20816445..20817214 583..1355 98 <- Minus
3R 20817309..20817427 464..582 99 <- Minus
3R 20817495..20817585 373..463 100 <- Minus
3R 20817640..20817800 212..372 99 <- Minus
3R 20818709..20818917 1..211 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:46:47 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20816445..20817214 583..1355 98 <- Minus
3R 20817309..20817427 464..582 99 <- Minus
3R 20817495..20817585 373..463 100 <- Minus
3R 20817640..20817800 212..372 99 <- Minus
3R 20818709..20818917 1..211 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:51:28 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16643362..16643522 212..372 99 <- Minus
arm_3R 16642167..16642936 583..1355 98 <- Minus
arm_3R 16643031..16643149 464..582 99 <- Minus
arm_3R 16643217..16643307 373..463 100 <- Minus
arm_3R 16644431..16644639 1..211 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:33:38 Download gff for GM10285.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20557276..20558045 583..1355 98 <- Minus
3R 20558140..20558258 464..582 99 <- Minus
3R 20558326..20558416 373..463 100 <- Minus
3R 20558471..20558631 212..372 99 <- Minus
3R 20559540..20559748 1..211 98   Minus

GM10285.hyp Sequence

Translation from 209 to 718

> GM10285.hyp
MAAMQSGGRPRERLLYAFRGWIAFVAFMDLGTAFRSYIERRSFLGDHSDT
QFIEGDYTISRIIGMYCLLKAIALVHCTLYIHYKPVVSMGGCSLALTMVF
YATEALYFRSSTINFYVIFPCVLNSITLLGLIYIPKRLRLWEPNMDLDDE
NSQLLKQMTGFKRRRAKKQ*

GM10285.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-PB 169 CG17270-PB 1..169 1..169 882 100 Plus
CG17270-PA 169 CG17270-PA 1..169 1..169 882 100 Plus

GM10285.pep Sequence

Translation from 209 to 718

> GM10285.pep
MAAMQSGGRPRERLLYAFRGWIAFVAFMDLGTAFRSYIERRSFLGDHSDT
QFIEGDYTISRIIGMYCLLKAIALVHCTLYIHYKPVVSMGGCSLALTMVF
YATEALYFRSSTINFYVIFPCVLNSITLLGLIYIPKRLRLWEPNMDLDDE
NSQLLKQMTGFKRRRAKKQ*

GM10285.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18311-PA 215 GF18311-PA 47..215 2..169 875 97 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15136-PA 197 GG15136-PA 30..197 2..169 899 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15972-PA 166 GH15972-PA 1..166 4..169 867 95.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17270-PB 169 CG17270-PB 1..169 1..169 882 100 Plus
CG17270-PA 169 CG17270-PA 1..169 1..169 882 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22156-PA 174 GI22156-PA 7..174 2..169 879 96.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27126-PA 166 GL27126-PA 1..166 4..169 867 96.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14428-PB 172 GA14428-PB 5..172 2..169 876 96.4 Plus
Dpse\GA14428-PA 166 GA14428-PA 1..166 4..169 867 96.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23158-PA 169 GM23158-PA 1..169 1..169 904 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20033-PA 169 GD20033-PA 1..169 1..169 904 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24275-PA 167 GJ24275-PA 1..167 4..169 846 94 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22697-PA 167 GK22697-PA 3..166 5..168 840 95.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25039-PA 166 GE25039-PA 1..166 4..169 881 98.8 Plus