Clone GM10489 Report

Search the DGRC for GM10489

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:104
Well:89
Vector:pBS SK-
Associated Gene/TranscriptCG34261-RA
Protein status:GM10489.pep: wuzgold
Preliminary Size:1144
Sequenced Size:910

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10519 2001-01-01 Release 2 assignment
CG34261 2008-04-29 Release 5.5 accounting
CG34261 2008-08-15 Release 5.9 accounting
CG34261 2008-12-18 5.12 accounting

Clone Sequence Records

GM10489.complete Sequence

910 bp (910 high quality bases) assembled on 2002-04-04

GenBank Submission: AY095020

> GM10489.complete
AATTTTTGTGAAGAAGTCGGAGGAGTATAAATGTAAAAGTTTTATGGAAA
TGTCAGGACTAACTTACAGAGAGATCAATGGCGACCTATTCAAATGCCAA
AGGGATTATTCCATGTGCCACTGCGTGGCTGCCGATTTGCGAATGGGCAG
AGGCATAGCTGTAAAGTTTCGGTAGGTAATGGCTTAGTGTTTTTAATAAA
ATGGTAAATTTGCCTATTTTCCAGAAACAAATTTGGACAGTTGTTGAATT
TGCAGAGACAAAATGTTCAGCCAGGCGGCGTGGCTGTCCTTCAGGACCAG
CAGCGATTTATTTACTATCTGATCACCAAGAAATCCAGCTGGGGAAAGCC
CACCTACGAACTTCTCCAGAGTTCCTTGATCGCCATGCGAAAACACATGG
TATGTTTATGTATCTTCTATAAGAAGTTATGATATACGAATCTTTCTACC
ATTTGCAGATCTCCCACCAAGTACCCAAGCTAGCCATGCCCCGCATTGGA
TGCGGTTTGGATGGCCTAAACTGGCCCAAAGTTAAGGAAATAATTTGCCA
GGTTTTTCAAGCGGATTCTGTTGAGCTGGTCGTTTATAATTATGTTGCTA
TGAAGTAAATGGCTCATATTAAACTAAACGATCCATTATTTTCCCTGTGG
AGGCACAAAATTGTAGACAACAATCTCCAGCGGCTCTTGGCCAAAAACGT
ACTCGAGGACTCCGCTGACTTTTTCCCATTCCAAGCCATCAATTCCGCAG
CCAATTTTTGGGATGGCCAGCTTATTCACGTTGTTTTTGCGCTAATGTAG
GAATAATAAAATGTAGCTCTTATTAATATAACTTGTCTAAGCTTTATATA
TATAATAAATAAAAGCAGGGATACATTCCATTCATAAAAGATAAAAAAAA
AAAAAAAAAA

GM10489.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG34261-RA 894 CG34261-RA 1..893 1..893 4465 100 Plus
CG34261.b 831 CG34261.b 400..831 458..889 2160 100 Plus
CG34261.a 777 CG34261.a 346..777 458..889 2160 100 Plus
CG34261.b 831 CG34261.b 225..400 224..399 880 100 Plus
CG34261.b 831 CG34261.b 55..225 1..171 855 100 Plus
CG34261.a 777 CG34261.a 17..187 1..171 855 100 Plus
CG34261.a 777 CG34261.a 187..346 240..399 800 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21185853..21186744 1..892 4460 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21196847..21197739 1..893 4465 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21189947..21190839 1..893 4465 100 Plus
Blast to na_te.dros performed on 2019-03-16 06:37:28 has no hits.

GM10489.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:38:37 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21185853..21186744 1..892 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:06:50 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RA 1..222 201..422 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:13:34 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RA 1..222 201..422 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:40:26 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RB 1..117 50..166 100 == Plus
CG34261-RB 118..297 218..399 98 == Plus
CG34261-RB 298..447 459..608 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:48 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RA 1..222 201..422 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:18:18 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RB 298..447 459..608 100   Plus
CG34261-RB 1..117 50..166 100 == Plus
CG34261-RB 118..297 218..399 98 == Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:45:48 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RA 1..892 1..892 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:13:33 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RA 1..892 1..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:26 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RB 183..361 218..398 98 == Plus
CG34261-RB 362..796 458..892 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:48 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RA 1..892 1..892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:18:18 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
CG34261-RB 183..361 218..398 98 == Plus
CG34261-RB 362..796 458..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:37 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21196847..21197738 1..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:37 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21196847..21197738 1..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:37 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21196847..21197738 1..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:26 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21189947..21190838 1..892 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:16 Download gff for GM10489.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21189947..21190838 1..892 100   Plus

GM10489.hyp Sequence

Translation from 200 to 421

> GM10489.hyp
MVNLPIFQKQIWTVVEFAETKCSARRRGCPSGPAAIYLLSDHQEIQLGKA
HLRTSPEFLDRHAKTHGMFMYLL*
Sequence GM10489.hyp has no blast hits.

GM10489.pep Sequence

Translation from 200 to 421

> GM10489.pep
MVNLPIFQKQIWTVVEFAETKCSARRRGCPSGPAAIYLLSDHQEIQLGKA
HLRTSPEFLDRHAKTHGMFMYLL*
Sequence GM10489.pep has no blast hits.