Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GM10489.complete Sequence
910 bp (910 high quality bases) assembled on 2002-04-04
GenBank Submission: AY095020
> GM10489.complete
AATTTTTGTGAAGAAGTCGGAGGAGTATAAATGTAAAAGTTTTATGGAAA
TGTCAGGACTAACTTACAGAGAGATCAATGGCGACCTATTCAAATGCCAA
AGGGATTATTCCATGTGCCACTGCGTGGCTGCCGATTTGCGAATGGGCAG
AGGCATAGCTGTAAAGTTTCGGTAGGTAATGGCTTAGTGTTTTTAATAAA
ATGGTAAATTTGCCTATTTTCCAGAAACAAATTTGGACAGTTGTTGAATT
TGCAGAGACAAAATGTTCAGCCAGGCGGCGTGGCTGTCCTTCAGGACCAG
CAGCGATTTATTTACTATCTGATCACCAAGAAATCCAGCTGGGGAAAGCC
CACCTACGAACTTCTCCAGAGTTCCTTGATCGCCATGCGAAAACACATGG
TATGTTTATGTATCTTCTATAAGAAGTTATGATATACGAATCTTTCTACC
ATTTGCAGATCTCCCACCAAGTACCCAAGCTAGCCATGCCCCGCATTGGA
TGCGGTTTGGATGGCCTAAACTGGCCCAAAGTTAAGGAAATAATTTGCCA
GGTTTTTCAAGCGGATTCTGTTGAGCTGGTCGTTTATAATTATGTTGCTA
TGAAGTAAATGGCTCATATTAAACTAAACGATCCATTATTTTCCCTGTGG
AGGCACAAAATTGTAGACAACAATCTCCAGCGGCTCTTGGCCAAAAACGT
ACTCGAGGACTCCGCTGACTTTTTCCCATTCCAAGCCATCAATTCCGCAG
CCAATTTTTGGGATGGCCAGCTTATTCACGTTGTTTTTGCGCTAATGTAG
GAATAATAAAATGTAGCTCTTATTAATATAACTTGTCTAAGCTTTATATA
TATAATAAATAAAAGCAGGGATACATTCCATTCATAAAAGATAAAAAAAA
AAAAAAAAAA
GM10489.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:16:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34261-RA | 894 | CG34261-RA | 1..893 | 1..893 | 4465 | 100 | Plus |
CG34261.b | 831 | CG34261.b | 400..831 | 458..889 | 2160 | 100 | Plus |
CG34261.a | 777 | CG34261.a | 346..777 | 458..889 | 2160 | 100 | Plus |
CG34261.b | 831 | CG34261.b | 225..400 | 224..399 | 880 | 100 | Plus |
CG34261.b | 831 | CG34261.b | 55..225 | 1..171 | 855 | 100 | Plus |
CG34261.a | 777 | CG34261.a | 17..187 | 1..171 | 855 | 100 | Plus |
CG34261.a | 777 | CG34261.a | 187..346 | 240..399 | 800 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 21185853..21186744 | 1..892 | 4460 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:37:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21196847..21197739 | 1..893 | 4465 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 21189947..21190839 | 1..893 | 4465 | 100 | Plus |
Blast to na_te.dros performed on 2019-03-16 06:37:28 has no hits.
GM10489.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:38:37 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 21185853..21186744 | 1..892 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:06:50 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RA | 1..222 | 201..422 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:13:34 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RA | 1..222 | 201..422 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:40:26 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RB | 1..117 | 50..166 | 100 | == | Plus |
CG34261-RB | 118..297 | 218..399 | 98 | == | Plus |
CG34261-RB | 298..447 | 459..608 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:56:48 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RA | 1..222 | 201..422 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:18:18 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RB | 298..447 | 459..608 | 100 | | Plus |
CG34261-RB | 1..117 | 50..166 | 100 | == | Plus |
CG34261-RB | 118..297 | 218..399 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:45:48 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RA | 1..892 | 1..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:13:33 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RA | 1..892 | 1..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:26 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RB | 183..361 | 218..398 | 98 | == | Plus |
CG34261-RB | 362..796 | 458..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:56:48 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RA | 1..892 | 1..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:18:18 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34261-RB | 183..361 | 218..398 | 98 | == | Plus |
CG34261-RB | 362..796 | 458..892 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:37 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21196847..21197738 | 1..892 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:37 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21196847..21197738 | 1..892 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:38:37 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21196847..21197738 | 1..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:26 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21189947..21190838 | 1..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:29:16 Download gff for
GM10489.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21189947..21190838 | 1..892 | 100 | | Plus |
GM10489.hyp Sequence
Translation from 200 to 421
> GM10489.hyp
MVNLPIFQKQIWTVVEFAETKCSARRRGCPSGPAAIYLLSDHQEIQLGKA
HLRTSPEFLDRHAKTHGMFMYLL*
Sequence GM10489.hyp has no blast hits.
GM10489.pep Sequence
Translation from 200 to 421
> GM10489.pep
MVNLPIFQKQIWTVVEFAETKCSARRRGCPSGPAAIYLLSDHQEIQLGKA
HLRTSPEFLDRHAKTHGMFMYLL*
Sequence GM10489.pep has no blast hits.