Clone GM10914 Report

Search the DGRC for GM10914

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:109
Well:14
Vector:pBS SK-
Associated Gene/TranscriptRab27-RC
Protein status:GM10914.pep: gold
Preliminary Size:1705
Sequenced Size:1548

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14791 2001-01-01 Release 2 assignment
CG14791 2001-10-10 Blastp of sequenced clone
CG14791 2003-01-01 Sim4 clustering to Release 3
Rab27 2008-04-29 Release 5.5 accounting
Rab27 2008-08-15 Release 5.9 accounting
Rab27 2008-12-18 5.12 accounting

Clone Sequence Records

GM10914.complete Sequence

1548 bp (1548 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060977

> GM10914.complete
CGGGCACGGGATACACTCCTGACTTTGAAGCCTTCGTCGGAGAGCAAAGC
TTAGGCGCCGTCCCGCGGAAGCTCCGTCCAAAGCCGTTCCATTCTTAAAG
TTGCCCGAGGGATTATGTCTCGAGAGTGCTTCGAAGTACTCACGAAATAC
CCACGTTCCCGTGGGAAAGGACACCTGTGCGGCGCACCTGTCGCGCGCGG
AAGCGCTTGAAAGCTGGCGCAAGCTTTGGCTGAAAGCTGAGCCTCGGAAA
AGGGACTGCCTGTTGGCGGCCAACGAGCCCTGTAGTCTGTGCTGGGCAGC
GCATGGCAACAGGTCGGGCAGCGCACCGCCCAGAGGATCCACTGCGTTGC
ATCCGCAGCATCCGCACAGCCTCGGATTTTTCGAAGTCCTCGTGGGTCAC
TTGTTTTCGTTTAGCAAACCTCTGCAAGGTGGTTGAAGGTCCCTTCCCCC
GCGCGGACGAATTGCGCGCGCTAAAAATAACGGTTGCCCGCCCAGTCAGT
CTGGTCCAGTCAGCTGAATCGCAGATTCCTTCCAGATCCTTGGAGTGACG
AGTGGCGTGCGGCGTGCCGAAAGAAGCCGCCTTGGGCGCCAAAGTCGACG
GCGGGCGTCGGAGCAGAAATGCGTGCCGCGCCTCCTGAGCCTGAGCCTCT
GCAATTAGCCGGATCCGGTGAACAGGCGGACGGGATGCGTCTGCGGTCCT
GAACGTTCCAAACGCGCTGCTACGAACGGCCATTATGACGGGCGCCAACA
TCGACTACGATTACCTGCTCAAGTTCCTCGTCCTGGGCGACTCCGGCGTG
GGAAAGACCTGCCTCCTCTACCAGTACACGGATGGCCGGTTCCACACCCA
GTTCATCTCCACTGTGGGCATCGACTTCCGCGAAAAGCGGCTGCTGTACA
ACTCCCGCGGACGCCGCCACCGCATCCACCTGCAGATCTGGGACACCGCC
GGACAGGAGCGCTTCCGTTCACTAACCACGGCGTTTTACCGCGACGCCAT
GGGTTTCCTGCTCATCTTCGACCTGACCAGCGAGAAGAGCTTCCTGGAGA
CGGCCAACTGGCTGTCGCAGCTGCGGACGCACGCCTACTCCGAGGACCCC
GACGTGGTCCTCTGCGGCAACAAGTGCGACCTGCTGCAGCTGCGCGTGGT
GAGTCGCGACCAGGTGGCGGCCCTCTGCCGACGCTACCGGCTGCCGTACA
TCGAGACGAGCGCCTGCACCGGCGCCAACGTCAAGGAGGCCGTGGAGCTG
CTGGTTGGCCGGGTCATGGAGCGGATCGAGAACGCGGCCTGCAACCGCGA
GTTCTCCCTGCTACTGACCCAGTCGCGATGCCTGCCGAACATCGCCTACG
GTCAGCCGGAGGACCTGGTGCGCCTCCACGATCGGCGAGAGGAGCCCTGC
TCGCGGCGCAACTGCCGCAACTGTTAGGTGCCATGCCCGTGGCCAAGTCA
CCCTGCTTTGTTCCTTGACTCGTGTTTCCGAATCTAAGTGTGTTTCGCTG
TAAATAAATGTTGATTGTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GM10914.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-RC 1660 Rab27-RC 136..1653 4..1521 7530 99.7 Plus
Rab27-RB 1422 Rab27-RB 674..1422 772..1520 3730 99.8 Plus
Rab27-RB 1422 Rab27-RB 4..675 4..675 3315 99.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:40:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 1370157..1370829 676..4 3290 99.3 Minus
chrX 22417052 chrX 1367809..1368436 1520..893 3140 100 Minus
chrX 22417052 chrX 1368600..1368820 893..673 1105 100 Minus
chr3R 27901430 chr3R 20650713..20650812 1029..930 185 79 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:39:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1476255..1476927 676..4 3320 99.6 Minus
X 23542271 X 1473883..1474511 1521..893 3145 100 Minus
X 23542271 X 1474675..1474895 893..673 1090 99.5 Minus
3R 32079331 3R 24827475..24827574 1029..930 185 79 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:30:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 1484353..1485025 676..4 3320 99.5 Minus
X 23527363 X 1481981..1482609 1521..893 3145 100 Minus
X 23527363 X 1482773..1482993 893..673 1090 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 03:39:59 has no hits.

GM10914.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:41:06 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 1368600..1368817 676..893 100 <- Minus
chrX 1367809..1368435 894..1520 100 <- Minus
chrX 1370158..1370832 1..675 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:02 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..693 735..1427 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:42:34 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..693 735..1427 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:00:59 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..693 735..1427 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:11:30 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..693 735..1427 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:10:34 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..693 735..1427 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:24:53 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..1520 1..1520 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:42:34 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..1520 1..1520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:00:59 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..1520 1..1520 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:11:30 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 1..1520 1..1520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:10:34 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
Rab27-RC 45..1564 1..1520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:06 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
X 1473884..1474510 894..1520 100 <- Minus
X 1474675..1474892 676..893 99 <- Minus
X 1476256..1476930 1..675 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:06 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
X 1473884..1474510 894..1520 100 <- Minus
X 1474675..1474892 676..893 99 <- Minus
X 1476256..1476930 1..675 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:06 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
X 1473884..1474510 894..1520 100 <- Minus
X 1474675..1474892 676..893 99 <- Minus
X 1476256..1476930 1..675 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:00:59 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1367917..1368543 894..1520 100 <- Minus
arm_X 1368708..1368925 676..893 99 <- Minus
arm_X 1370289..1370963 1..675 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:47:48 Download gff for GM10914.complete
Subject Subject Range Query Range Percent Splice Strand
X 1481982..1482608 894..1520 100 <- Minus
X 1482773..1482990 676..893 99 <- Minus
X 1484354..1485028 1..675 99   Minus

GM10914.pep Sequence

Translation from 734 to 1426

> GM10914.pep
MTGANIDYDYLLKFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFRE
KRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSE
KSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRDQVAALCRR
YRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLLTQSRCL
PNIAYGQPEDLVRLHDRREEPCSRRNCRNC*

GM10914.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:46:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10843-PA 207 GF10843-PA 5..174 8..182 430 46.3 Plus
Dana\GF20241-PA 204 GF20241-PA 6..173 8..180 424 44.5 Plus
Dana\GF11093-PA 220 GF11093-PA 13..189 3..184 414 41.8 Plus
Dana\GF17263-PA 205 GF17263-PA 1..203 1..206 386 36.1 Plus
Dana\GF11067-PA 213 GF11067-PA 1..174 6..184 365 40.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12695-PA 234 GG12695-PA 17..234 13..230 1146 98.2 Plus
Dere\GG13365-PA 207 GG13365-PA 5..174 8..182 430 46.3 Plus
Dere\GG19277-PA 204 GG19277-PA 6..162 8..169 417 47.5 Plus
Dere\GG22724-PA 220 GG22724-PA 13..189 3..184 414 41.8 Plus
Dere\GG14761-PA 205 GG14761-PA 1..203 1..206 388 36.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24468-PA 234 GH24468-PA 1..234 1..230 979 78.9 Plus
Dgri\GH16908-PA 207 GH16908-PA 5..174 8..182 425 45.7 Plus
Dgri\GH12621-PA 204 GH12621-PA 6..173 8..180 417 45.1 Plus
Dgri\GH24197-PA 220 GH24197-PA 13..189 3..184 414 41.8 Plus
Dgri\GH18937-PA 205 GH18937-PA 1..199 1..202 383 36.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-PC 230 CG14791-PC 1..230 1..230 1215 100 Plus
Rab27-PB 236 CG14791-PB 19..236 13..230 1147 99.5 Plus
Rab8-PC 207 CG8287-PC 5..174 8..182 417 46.3 Plus
Rab8-PA 207 CG8287-PA 5..174 8..182 417 46.3 Plus
Rab10-PA 204 CG17060-PA 6..173 8..180 407 45.1 Plus
Rab3-PB 220 CG7576-PB 14..189 4..184 401 42 Plus
Rab3-PA 220 CG7576-PA 14..189 4..184 401 42 Plus
Rab1-PA 205 CG3320-PA 1..203 1..206 374 36.1 Plus
Rab9Fb-PA 214 CG32670-PA 4..179 8..188 362 44.2 Plus
Rab2-PB 213 CG3269-PB 1..172 6..182 357 41.2 Plus
Rab2-PA 213 CG3269-PA 1..172 6..182 357 41.2 Plus
RabX4-PA 213 CG31118-PA 3..180 6..187 350 41.5 Plus
Rab26-PE 410 CG34410-PE 208..365 7..167 350 47.2 Plus
Rab26-PD 410 CG34410-PD 208..365 7..167 350 47.2 Plus
Rab26-PC 410 CG34410-PC 208..365 7..167 350 47.2 Plus
Rab4-PA 213 CG4921-PA 5..181 8..189 341 41.2 Plus
Rab4-PB 213 CG4921-PB 5..181 8..189 341 41.2 Plus
Rab11-PA 214 CG5771-PA 7..172 7..177 330 39.2 Plus
Rab11-PB 214 CG5771-PB 7..172 7..177 330 39.2 Plus
Rab14-PD 215 CG4212-PD 1..177 1..182 328 35.7 Plus
Rab14-PA 215 CG4212-PA 1..177 1..182 328 35.7 Plus
Rab14-PB 239 CG4212-PB 25..201 1..182 328 35.7 Plus
Rab39-PB 218 CG12156-PB 6..187 8..189 313 37.3 Plus
Rab39-PA 218 CG12156-PA 6..187 8..189 313 37.3 Plus
Rab7-PC 207 CG5915-PC 8..186 11..190 312 39.9 Plus
Rab7-PB 207 CG5915-PB 8..186 11..190 312 39.9 Plus
Rab7-PA 207 CG5915-PA 8..186 11..190 312 39.9 Plus
Rab26-PG 388 CG34410-PG 192..343 13..167 307 45.2 Plus
Rab26-PB 388 CG34410-PB 192..343 13..167 307 45.2 Plus
Rab19-PB 219 CG7062-PP3-RB 18..184 8..177 306 36 Plus
Rab19-PA 219 CG7062-PA 18..184 8..177 306 36 Plus
RabX2-PA 195 CG2885-PA 4..171 8..180 302 40.5 Plus
Rab18-PA 197 CG3129-PA 3..166 9..178 288 37.2 Plus
Rab35-PB 201 CG9575-PB 5..170 8..179 288 34.3 Plus
Rab35-PD 201 CG9575-PD 5..170 8..179 288 34.3 Plus
Rab35-PA 201 CG9575-PA 5..170 8..179 288 34.3 Plus
Rab8-PB 172 CG8287-PB 7..139 45..182 283 42.8 Plus
Rab6-PB 208 CG6601-PB 14..164 13..168 279 38.5 Plus
Rab6-PA 208 CG6601-PA 14..164 13..168 279 38.5 Plus
Rab21-PC 222 CG17515-PC 15..179 13..181 275 37.3 Plus
Rab21-PD 222 CG17515-PD 15..179 13..181 275 37.3 Plus
Rab9Fa-PA 197 CG32671-PA 4..159 8..166 269 41.5 Plus
Rab9E-PA 197 CG32673-PA 4..159 8..166 265 40.9 Plus
Rab9D-PA 197 CG32678-PA 4..159 8..166 265 41.5 Plus
Rab30-PD 223 CG9100-PD 3..215 7..206 265 32.4 Plus
Rab30-PC 223 CG9100-PC 3..215 7..206 265 32.4 Plus
Rab30-PB 223 CG9100-PB 3..215 7..206 265 32.4 Plus
Rab30-PA 223 CG9100-PA 3..215 7..206 265 32.4 Plus
Rab9Db-PA 197 CG9807-PA 4..159 8..166 256 40.3 Plus
Rab5-PI 219 CG3664-PI 31..181 13..168 256 35.3 Plus
Rab5-PH 219 CG3664-PH 31..181 13..168 256 35.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16485-PA 228 GI16485-PA 1..228 1..230 1022 84.8 Plus
Dmoj\GI13664-PA 207 GI13664-PA 5..174 8..182 425 45.7 Plus
Dmoj\GI11034-PA 204 GI11034-PA 6..173 8..180 421 45.7 Plus
Dmoj\GI20173-PA 220 GI20173-PA 13..215 3..202 417 38.9 Plus
Dmoj\GI10837-PA 205 GI10837-PA 1..203 1..206 387 36.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:46:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14374-PA 230 GL14374-PA 1..230 1..230 1086 90.5 Plus
Dper\GL15675-PA 207 GL15675-PA 5..174 8..182 428 46.3 Plus
Dper\GL17187-PA 220 GL17187-PA 13..189 3..184 414 41.8 Plus
Dper\GL27164-PA 205 GL27164-PA 1..201 1..202 382 36.4 Plus
Dper\GL11116-PA 213 GL11116-PA 1..174 6..184 365 40.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13248-PA 230 GA13248-PA 1..230 1..230 1086 90.5 Plus
Dpse\GA23499-PA 207 GA23499-PA 5..174 8..182 428 46.3 Plus
Dpse\GA26078-PA 204 GA26078-PA 6..184 8..189 418 44.6 Plus
Dpse\GA20450-PA 220 GA20450-PA 13..189 3..184 414 41.8 Plus
Dpse\GA17362-PA 205 GA17362-PA 1..201 1..202 382 36.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15893-PA 207 GM15893-PA 5..174 8..182 430 46.3 Plus
Dsec\GM23016-PA 204 GM23016-PA 6..162 8..169 417 47.5 Plus
Dsec\GM20500-PA 220 GM20500-PA 13..189 3..184 414 41.8 Plus
Dsec\GM15089-PA 205 GM15089-PA 1..203 1..206 388 36.1 Plus
Dsec\GM20894-PA 200 GM20894-PA 1..177 6..187 363 40.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12244-PA 207 GD12244-PA 5..174 8..182 430 46.3 Plus
Dsim\GD19996-PA 205 GD19996-PA 1..203 1..206 388 36.1 Plus
Dsim\GD10420-PA 213 GD10420-PA 1..174 6..184 365 40.8 Plus
Dsim\GD11278-PA 215 GD11278-PA 3..179 7..188 353 42.9 Plus
Dsim\GD11294-PA 213 GD11294-PA 5..181 8..189 352 41.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16030-PA 226 GJ16030-PA 1..226 1..230 1025 86.1 Plus
Dvir\GJ13999-PA 207 GJ13999-PA 5..174 8..182 425 45.7 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 6..162 8..169 417 48.1 Plus
Dvir\GJ20130-PA 220 GJ20130-PA 13..189 3..184 414 41.8 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 1..203 1..206 388 36.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:46:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16937-PA 230 GK16937-PA 1..230 1..230 1004 82.8 Plus
Dwil\GK17214-PA 207 GK17214-PA 5..195 8..198 429 44.4 Plus
Dwil\GK25049-PA 204 GK25049-PA 6..173 8..180 420 45.7 Plus
Dwil\GK19661-PA 220 GK19661-PA 14..189 4..184 414 42 Plus
Dwil\GK12772-PA 205 GK12772-PA 1..203 1..206 387 36.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:46:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16524-PA 234 GE16524-PA 17..234 13..230 1154 99.5 Plus
Dyak\GE22459-PA 207 GE22459-PA 5..174 8..182 430 46.3 Plus
Dyak\GE17866-PA 204 GE17866-PA 6..162 8..169 417 47.5 Plus
Dyak\GE13081-PA 220 GE13081-PA 13..189 3..184 414 41.8 Plus
Dyak\Rab1-PA 205 GE25003-PA 1..203 1..206 388 36.1 Plus

GM10914.hyp Sequence

Translation from 734 to 1426

> GM10914.hyp
MTGANIDYDYLLKFLVLGDSGVGKTCLLYQYTDGRFHTQFISTVGIDFRE
KRLLYNSRGRRHRIHLQIWDTAGQERFRSLTTAFYRDAMGFLLIFDLTSE
KSFLETANWLSQLRTHAYSEDPDVVLCGNKCDLLQLRVVSRDQVAALCRR
YRLPYIETSACTGANVKEAVELLVGRVMERIENAACNREFSLLLTQSRCL
PNIAYGQPEDLVRLHDRREEPCSRRNCRNC*

GM10914.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rab27-PC 230 CG14791-PC 1..230 1..230 1215 100 Plus
Rab27-PB 236 CG14791-PB 19..236 13..230 1147 99.5 Plus
Rab8-PC 207 CG8287-PC 5..174 8..182 417 46.3 Plus
Rab8-PA 207 CG8287-PA 5..174 8..182 417 46.3 Plus
Rab10-PA 204 CG17060-PA 6..173 8..180 407 45.1 Plus