Clone GM12182 Report

Search the DGRC for GM12182

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:121
Well:82
Vector:pOT2
Associated Gene/TranscriptCG7593-RA
Protein status:GM12182.pep: gold
Preliminary Size:777
Sequenced Size:744

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7593 2002-01-01 Sim4 clustering to Release 2
CG7593 2002-05-18 Blastp of sequenced clone
CG7593 2003-01-01 Sim4 clustering to Release 3
CG7593 2008-04-29 Release 5.5 accounting
CG7593 2008-08-15 Release 5.9 accounting
CG7593 2008-12-18 5.12 accounting

Clone Sequence Records

GM12182.complete Sequence

744 bp (744 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118838

> GM12182.complete
GAATTCGGCACGAGCTAATTTGCGCGGCATACTTTTTGTCGAATTGCCAT
TTTTACAAAATTTTAAGCAAACAATGCGGAATCAGGACGATCTAAGTCAG
GGCGCCAAACAGAGATTTGTGGAGACGGCTGCCAGGGCCAAGAATCCCCT
CGAATCTCTGAGCTACCAAAGCTACAAAGCCCCCAGCGGAGAGGAATTCA
AACTCATCTGCCGAGCGAAGTCGGATGCGGACTCCAAACTGCTGAAATGG
GCCTTTAAGCTGGCCGAGACGAACGTGGGACCCTATTACAAGCAACTCAA
GATGGGCTGGCAGCCCAAGATCAAAGCCGCCGAGCTGAACAAGAACTGGG
CTCGCTACTTGGTGGCCCAGAACGAAAAGAAGGAGAACGTGGCCTACGCA
ATGTTCCGCTTCGACATGGATCACGGGGACTGTGTCCTGTATTGTTACGA
AATGCAAGTGGCTGCAGAGTATCGTAGAAAAGGCCTGGGAAAGTTCATCA
TGAGCACTTTGGAGGACTGCGCTCGCCTGTGGCATCTGGAAAAGGTCATG
CTGACCGTTCTCAACAACAACGAAGCCTCCATTTCCTTCTTCAAGCAACT
GGGCTACGTGAAGGACGAGATCTCGCCAGATGTCCTGGAACAAGCCGACT
ACCAAATCTTTAGCAAATCGATGCTGAGCTGAGTATTTATTGGACACCGA
AGATTATAGATATTTAGCAACTAGTAAAAAAAAAAAAAAAAAAA

GM12182.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7593-RA 773 CG7593-RA 48..759 15..726 3500 99.4 Plus
Pcd-RA 843 Pcd-RA 723..843 726..606 575 98.3 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25547106..25547535 444..15 2150 100 Minus
chr3R 27901430 chr3R 25546769..25547050 725..444 1410 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29724496..29724925 444..15 2120 99.5 Minus
3R 32079331 3R 29724158..29724440 726..444 1385 99.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29465327..29465756 444..15 2120 99.5 Minus
3R 31820162 3R 29464989..29465271 726..444 1385 99.2 Minus
Blast to na_te.dros performed on 2019-03-15 12:26:09 has no hits.

GM12182.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:27:18 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25546769..25547049 445..725 100 <- Minus
chr3R 25547106..25547535 15..444 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:04 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 1..609 74..682 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:36 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 1..609 74..682 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:42:42 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 1..609 74..682 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:37:54 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 1..609 74..682 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 19:59:16 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 1..609 74..682 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:21:00 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 1..706 20..725 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:36 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 1..715 13..725 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:42:42 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 26..736 15..725 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:37:55 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 1..706 20..725 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 19:59:16 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
CG7593-RA 26..736 15..725 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:18 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29724159..29724439 445..725 99 <- Minus
3R 29724496..29724925 15..444 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:18 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29724159..29724439 445..725 99 <- Minus
3R 29724496..29724925 15..444 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:27:18 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29724159..29724439 445..725 99 <- Minus
3R 29724496..29724925 15..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:42:42 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25549881..25550161 445..725 99 <- Minus
arm_3R 25550218..25550647 15..444 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:10:13 Download gff for GM12182.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29464990..29465270 445..725 99 <- Minus
3R 29465327..29465756 15..444 99   Minus

GM12182.hyp Sequence

Translation from 16 to 681

> GM12182.hyp
NLRGIFLVELPFLQNFKQTMRNQDDLSQGAKQRFVETAARAKNPLESLSY
QSYKAPSGEEFKLICRAKSDADSKLLKWAFKLAETNVGPYYKQLKMGWQP
KIKAAELNKNWARYLVAQNEKKENVAYAMFRFDMDHGDCVLYCYEMQVAA
EYRRKGLGKFIMSTLEDCARLWHLEKVMLTVLNNNEASISFFKQLGYVKD
EISPDVLEQADYQIFSKSMLS*

GM12182.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7593-PA 202 CG7593-PA 1..202 20..221 1056 100 Plus

GM12182.pep Sequence

Translation from 73 to 681

> GM12182.pep
MRNQDDLSQGAKQRFVETAARAKNPLESLSYQSYKAPSGEEFKLICRAKS
DADSKLLKWAFKLAETNVGPYYKQLKMGWQPKIKAAELNKNWARYLVAQN
EKKENVAYAMFRFDMDHGDCVLYCYEMQVAAEYRRKGLGKFIMSTLEDCA
RLWHLEKVMLTVLNNNEASISFFKQLGYVKDEISPDVLEQADYQIFSKSM
LS*

GM12182.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22869-PA 202 GF22869-PA 1..202 1..202 950 85.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12007-PA 202 GG12007-PA 1..202 1..202 1067 98 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:54:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13990-PA 202 GH13990-PA 1..202 1..202 853 77.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
Naa40-PA 202 CG7593-PA 1..202 1..202 1056 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22333-PA 202 GI22333-PA 1..202 1..202 845 75.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13579-PA 202 GL13579-PA 1..202 1..202 879 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20464-PA 202 GA20464-PA 1..202 1..202 888 79.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12227-PA 202 GM12227-PA 1..202 1..202 1041 96 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17683-PA 202 GD17683-PA 1..202 1..202 1042 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10522-PA 204 GJ10522-PA 1..204 1..202 801 70.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:54:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11169-PA 202 GK11169-PA 1..202 1..202 810 72.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10433-PA 202 GE10433-PA 1..202 1..202 1066 98 Plus