Clone GM12270 Report

Search the DGRC for GM12270

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:122
Well:70
Vector:pOT2
Associated Gene/TranscriptCct5-RA
Protein status:GM12270.pep: gold
Preliminary Size:1943
Sequenced Size:1938

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8439 2001-01-01 Release 2 assignment
CG8439 2002-12-11 Blastp of sequenced clone
CG8439 2003-01-01 Sim4 clustering to Release 3
Cct5 2008-04-29 Release 5.5 accounting
Cct5 2008-08-15 Release 5.9 accounting
Cct5 2008-12-18 5.12 accounting

Clone Sequence Records

GM12270.complete Sequence

1938 bp (1938 high quality bases) assembled on 2002-12-11

GenBank Submission: AF172635

> GM12270.complete
TCGTTCGTTCGTTCGTTGGAATAAAATAAACTCGGGAATTAAATCTTGGA
AAAACGTGCGAATCCGTCATCCTTTCATCTAAAAAACCATGAGCGCCTTT
CCCGGTACGTTCGCGTTCGACGAATATGGTCGGCCTTTCATCATCCTGCG
CGACCAGGAGCGCCAGAAGCGCATCACAGGAACAGATGCCATAAAGACGC
ACATTATGGCCGCCCGCCAGATCGCGTCCACCCTGAAGACCTCTCTGGGT
CCCAAGGGTCTGGACAAGATCATGGTCAGTCCCGACGGCGACGTGACTGT
GACCAACGATGGCGCCACCATCATGAAGCTGATGGAGGTTGACCACGAGA
TTGCCAAGCTGATGGTGCAGCTGTCGCAGTCACAGGACGACGAGATCGGC
GATGGAACCACCGGCGTTGTCGTGCTGGCCGGAGCACTCTTGGAGCAGGC
CGAGGGACTGATCGACAGGGGCATTCATCCCATTCGCATCGCCGATGGCT
TTGAATTGGCCGCCCAGTGCGCCATCAAGCAGCTGGACGCGATCGCCCAA
CCCTTCCCCGTGGACCCGAAGAACAAGGAGCCACTTATCCAGATCGCCAT
GACCACGCTGGGCAGCAAGATCGTGAACAAGTGCCATCGTCAGATGGCCG
AAATGGCTGTGGATGCTGTGCTGAATGTGGCCGACATTGAGAAGAAGGAC
GTGAACTTCGAGCTCATCAAGATCGAGACCAAGGTGGGCGGTCGCATGGA
GGACTCGATGCTGGTGAAGGGTGTCATCGTTGACAAGACCCTCAGCCATT
CGCAGATGCCCAAGGAGCTAAGGAACGTCAAGCTGGCCATTCTCACCTGC
CCGTTTGAGCCCCCGAAGCCAAAGACCAAGCATAAGCTCGATGTTACCTC
CGCGGAAGACTACAGGGCGCTGCGCGAGTACGAGCAGGAGAAGTTCACCC
AGATGGTCAAGCAGGTGAAGGACGCCGGCGCCACCCTTGCCATCTGCCAG
TGGGGCTTCGATGATGAGGCCAACCACCTGTTGCTTCAGCAGGAGCTGCC
CGCCGTGCGCTGGGTTGGCGGTCCGGAGATCGAGCTGATTGCCATCGCCA
CCGGTGGACGCATCGTGCCGCGTTTCGAAGAGCTCACGCCTGAGAAACTA
GGTGTTGCGGGACTCGTTCGCGAAATGGCATTCGGAACATCCAAGGACAA
GATGCTGGTCATCGAGGAGTGCAAAAACTCCAAGGCTGTGACCATCTTCT
TGCGTGGAGGTAACGCCATGATCATTGCGGAGGCTAAGCGATCGATTCAC
GATGCCATCTGCGTGGTGCGTTCGCTTGTGAAGGACTCGCGAATTGTTTA
CGGTGGTGGAGCTGCCGAGATTAGCTGCTCGTTGGCTGTGGCCAAGGAGG
CCGACCAACTGTCCACGCTGGAGCAGTACGCCTTCCGCGCCTTCTCCGTG
GCCCTGGAGAGCATTCCGCTGGCTCTGGCGGAGAACAGCGGCCTGCATCC
CATCGAGACGTTGTCGGAGCTGAAGGCCAGACAGGTGGCCGAGAAGAAGT
CCAGCCTGGGTGTCGACTGCATGCTGTCGGGTGATTCGGACATGAAGAGC
CATAACGTGGTGGAGTCGCTGCACTCGAAGAAGCAGCAGATTCTGCTCTC
CACGCAGCTCGTCAAGATGATACTCAAGATCGACGACGTGCGCTCCAAGA
ACGAAGGCGGCATGTAACGACCGCCCAGCAGCAGCATCATACATCAGATC
TAGTTTCAGATTCACATCCCCACGCTTCGCTATCTCTTCACGAACAACAC
CCGCGTCAAGCCTCATCTCTATGTACATCTGTATTAATTGTTTAATTTTA
TTAATCCACAAGTTCTTTGGAAAAGAAGAAAATTACATTAAACAAGGGGC
TATCCCTGTTCAAATACACTAAAAAAAAAAAAAAAAAA

GM12270.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5.a 2026 Cct5.a 101..2024 1..1924 9605 99.9 Plus
Cct5-RA 2093 Cct5-RA 156..2079 1..1924 9605 99.9 Plus
Cct5-RB 1763 Cct5-RB 33..1761 196..1924 8630 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8062950..8063933 195..1178 4920 100 Plus
chr2R 21145070 chr2R 8063992..8064734 1178..1920 3700 99.9 Plus
chr2R 21145070 chr2R 8062048..8062243 1..196 980 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12175735..12176718 195..1178 4920 100 Plus
2R 25286936 2R 12176777..12177523 1178..1924 3720 99.9 Plus
2R 25286936 2R 12174833..12175028 1..196 980 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12176934..12177917 195..1178 4920 100 Plus
2R 25260384 2R 12177976..12178722 1178..1924 3720 99.8 Plus
2R 25260384 2R 12176032..12176227 1..196 980 100 Plus
Blast to na_te.dros performed 2019-03-15 23:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2793..2858 1675..1740 114 63.6 Plus

GM12270.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:28:25 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8062048..8062243 1..196 100 -> Plus
chr2R 8062952..8063933 197..1178 100 -> Plus
chr2R 8063993..8064734 1179..1920 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:05 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 1..1629 89..1717 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:14 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 1..1629 89..1717 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:32 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 1..1629 89..1717 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:48 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 1..1629 89..1717 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:37 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 1..1629 89..1717 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:25 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 58..1977 1..1920 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:14 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 58..1977 1..1920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:32 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 32..1948 1..1917 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:49 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 58..1977 1..1920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:37 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
Cct5-RA 32..1948 1..1917 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:25 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12174833..12175028 1..196 100 -> Plus
2R 12175737..12176718 197..1178 100 -> Plus
2R 12176778..12177519 1179..1920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:25 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12174833..12175028 1..196 100 -> Plus
2R 12175737..12176718 197..1178 100 -> Plus
2R 12176778..12177519 1179..1920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:25 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12174833..12175028 1..196 100 -> Plus
2R 12175737..12176718 197..1178 100 -> Plus
2R 12176778..12177519 1179..1920 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:32 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8062338..8062533 1..196 100 -> Plus
arm_2R 8063242..8064223 197..1178 100 -> Plus
arm_2R 8064283..8065024 1179..1920 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:34 Download gff for GM12270.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12176936..12177917 197..1178 100 -> Plus
2R 12177977..12178718 1179..1920 99   Plus
2R 12176032..12176227 1..196 100 -> Plus

GM12270.pep Sequence

Translation from 88 to 1716

> GM12270.pep
MSAFPGTFAFDEYGRPFIILRDQERQKRITGTDAIKTHIMAARQIASTLK
TSLGPKGLDKIMVSPDGDVTVTNDGATIMKLMEVDHEIAKLMVQLSQSQD
DEIGDGTTGVVVLAGALLEQAEGLIDRGIHPIRIADGFELAAQCAIKQLD
AIAQPFPVDPKNKEPLIQIAMTTLGSKIVNKCHRQMAEMAVDAVLNVADI
EKKDVNFELIKIETKVGGRMEDSMLVKGVIVDKTLSHSQMPKELRNVKLA
ILTCPFEPPKPKTKHKLDVTSAEDYRALREYEQEKFTQMVKQVKDAGATL
AICQWGFDDEANHLLLQQELPAVRWVGGPEIELIAIATGGRIVPRFEELT
PEKLGVAGLVREMAFGTSKDKMLVIEECKNSKAVTIFLRGGNAMIIAEAK
RSIHDAICVVRSLVKDSRIVYGGGAAEISCSLAVAKEADQLSTLEQYAFR
AFSVALESIPLALAENSGLHPIETLSELKARQVAEKKSSLGVDCMLSGDS
DMKSHNVVESLHSKKQQILLSTQLVKMILKIDDVRSKNEGGM*

GM12270.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12298-PA 542 GF12298-PA 1..542 1..542 2820 98 Plus
Dana\GF20588-PA 321 GF20588-PA 1..321 189..542 1491 83.9 Plus
Dana\GF15661-PA 533 GF15661-PA 24..528 32..534 827 37.9 Plus
Dana\GF19192-PA 533 GF19192-PA 24..518 37..534 682 35.6 Plus
Dana\GF17067-PA 544 GF17067-PA 6..530 15..541 633 31 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20252-PA 542 GG20252-PA 1..542 1..542 2864 99.8 Plus
Dere\GG10247-PA 533 GG10247-PA 24..528 32..534 822 38.1 Plus
Dere\GG18286-PA 533 GG18286-PA 24..518 37..534 687 35.6 Plus
Dere\GG12510-PA 557 GG12510-PA 14..533 28..534 637 32.1 Plus
Dere\GG21785-PA 544 GG21785-PA 6..530 15..541 629 31 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19719-PA 541 GH19719-PA 1..540 1..540 2789 97.4 Plus
Dgri\GH11666-PA 533 GH11666-PA 24..528 32..534 804 37.7 Plus
Dgri\GH12396-PA 533 GH12396-PA 24..518 37..534 687 35.8 Plus
Dgri\GH18443-PA 557 GH18443-PA 14..533 28..534 639 32.2 Plus
Dgri\GH18159-PA 544 GH18159-PA 6..530 15..541 630 30.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:29
Subject Length Description Subject Range Query Range Score Percent Strand
CCT5-PA 542 CG8439-PA 1..542 1..542 2717 100 Plus
CCT5-PB 512 CG8439-PB 7..512 37..542 2530 100 Plus
CCT4-PA 533 CG5525-PA 24..528 32..534 820 37.5 Plus
CCT2-PA 535 CG7033-PA 7..520 16..534 707 34.4 Plus
CCT1-PA 557 CG5374-PA 14..537 28..538 674 32 Plus
CCT1-PB 557 CG5374-PB 14..537 28..538 674 32 Plus
CCT3-PD 544 CG8977-PD 6..530 15..541 651 31 Plus
CCT3-PC 544 CG8977-PC 6..530 15..541 651 31 Plus
CCT3-PB 544 CG8977-PB 6..530 15..541 651 31 Plus
CCT3-PA 544 CG8977-PA 6..530 15..541 651 31 Plus
CCT7-PA 544 CG8351-PA 17..525 31..541 612 28.9 Plus
CCT6-PA 533 CG8231-PA 19..523 34..534 587 30.6 Plus
CCT8-PA 546 CG8258-PA 27..533 33..541 535 29.4 Plus
Hsp60A-PB 573 CG12101-PB 43..443 45..430 182 23.4 Plus
Hsp60A-PA 573 CG12101-PA 43..443 45..430 182 23.4 Plus
Hsp60C-PB 576 CG7235-PB 47..485 45..469 182 22.3 Plus
Hsp60C-PC 576 CG7235-PC 47..485 45..469 182 22.3 Plus
Hsp60C-PA 576 CG7235-PA 47..485 45..469 182 22.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20138-PA 541 GI20138-PA 1..540 1..540 2772 96.7 Plus
Dmoj\GI17110-PA 533 GI17110-PA 24..528 32..534 831 38.1 Plus
Dmoj\GI14726-PA 514 GI14726-PA 5..499 37..534 680 37 Plus
Dmoj\GI10788-PA 557 GI10788-PA 14..533 28..534 640 31.9 Plus
Dmoj\GI10112-PA 544 GI10112-PA 6..530 15..541 635 31 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11023-PA 542 GL11023-PA 1..542 1..542 2780 96.9 Plus
Dper\GL19739-PA 533 GL19739-PA 13..528 21..534 822 37.3 Plus
Dper\GL13090-PA 521 GL13090-PA 7..506 16..534 650 33.4 Plus
Dper\GL23334-PA 557 GL23334-PA 14..533 28..534 630 31.5 Plus
Dper\GL24528-PA 533 GL24528-PA 6..519 15..541 589 30.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21078-PA 542 GA21078-PA 1..542 1..542 2780 96.9 Plus
Dpse\GA18950-PA 533 GA18950-PA 13..528 21..534 821 37.3 Plus
Dpse\GA20046-PA 533 GA20046-PA 24..518 37..534 676 35.4 Plus
Dpse\GA21448-PA 544 GA21448-PA 6..530 15..541 632 31 Plus
Dpse\GA18830-PA 557 GA18830-PA 14..533 28..534 630 31.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21339-PA 542 GM21339-PA 1..542 1..542 2860 99.6 Plus
Dsec\GM26064-PA 533 GM26064-PA 24..528 32..534 821 37.9 Plus
Dsec\GM13717-PA 533 GM13717-PA 24..518 37..534 669 34.6 Plus
Dsec\GM23644-PA 557 GM23644-PA 14..533 28..534 639 32.1 Plus
Dsec\GM15181-PA 544 GM15181-PA 6..530 15..541 629 31 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22106-PA 516 GD22106-PA 24..511 32..534 744 35.8 Plus
Dsim\T-cp1-PA 557 GD18453-PA 14..533 28..534 639 32.1 Plus
Dsim\GD19118-PA 544 GD19118-PA 6..530 15..541 629 31 Plus
Dsim\GD24772-PA 449 GD24772-PA 1..434 95..534 544 33 Plus
Dsim\GD10130-PA 546 GD10130-PA 27..533 33..541 497 29 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19908-PA 541 GJ19908-PA 1..540 1..540 2781 97.2 Plus
Dvir\GJ16148-PA 533 GJ16148-PA 24..528 32..534 823 37.7 Plus
Dvir\GJ19440-PA 533 GJ19440-PA 5..518 16..534 702 35.7 Plus
Dvir\GJ14386-PA 557 GJ14386-PA 14..533 28..534 639 31.9 Plus
Dvir\GJ23334-PA 544 GJ23334-PA 6..530 15..541 625 30.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23011-PA 542 GK23011-PA 1..542 1..542 2805 97.4 Plus
Dwil\GK14617-PA 533 GK14617-PA 24..528 32..534 826 37.7 Plus
Dwil\GK16400-PA 533 GK16400-PA 24..518 37..534 673 35.8 Plus
Dwil\GK14439-PA 557 GK14439-PA 14..533 28..534 646 32.4 Plus
Dwil\GK13436-PA 544 GK13436-PA 6..530 15..541 626 30.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12411-PA 542 GE12411-PA 1..542 1..542 2853 99.4 Plus
Dyak\GE12130-PA 533 GE12130-PA 24..528 32..534 822 38.1 Plus
Dyak\GE15818-PA 533 GE15818-PA 24..518 37..534 689 35.6 Plus
Dyak\GE24032-PA 557 GE24032-PA 14..533 28..534 638 32.1 Plus
Dyak\GE24588-PA 544 GE24588-PA 6..530 15..541 629 31 Plus

GM12270.hyp Sequence

Translation from 88 to 1716

> GM12270.hyp
MSAFPGTFAFDEYGRPFIILRDQERQKRITGTDAIKTHIMAARQIASTLK
TSLGPKGLDKIMVSPDGDVTVTNDGATIMKLMEVDHEIAKLMVQLSQSQD
DEIGDGTTGVVVLAGALLEQAEGLIDRGIHPIRIADGFELAAQCAIKQLD
AIAQPFPVDPKNKEPLIQIAMTTLGSKIVNKCHRQMAEMAVDAVLNVADI
EKKDVNFELIKIETKVGGRMEDSMLVKGVIVDKTLSHSQMPKELRNVKLA
ILTCPFEPPKPKTKHKLDVTSAEDYRALREYEQEKFTQMVKQVKDAGATL
AICQWGFDDEANHLLLQQELPAVRWVGGPEIELIAIATGGRIVPRFEELT
PEKLGVAGLVREMAFGTSKDKMLVIEECKNSKAVTIFLRGGNAMIIAEAK
RSIHDAICVVRSLVKDSRIVYGGGAAEISCSLAVAKEADQLSTLEQYAFR
AFSVALESIPLALAENSGLHPIETLSELKARQVAEKKSSLGVDCMLSGDS
DMKSHNVVESLHSKKQQILLSTQLVKMILKIDDVRSKNEGGM*

GM12270.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cct5-PA 542 CG8439-PA 1..542 1..542 2717 100 Plus
Cct5-PB 512 CG8439-PB 7..512 37..542 2530 100 Plus
CG5525-PA 533 CG5525-PA 24..528 32..534 820 37.5 Plus
CG7033-PA 535 CG7033-PA 7..520 16..534 707 34.4 Plus
T-cp1-PA 557 CG5374-PA 14..537 28..538 674 32 Plus