Clone GM12291 Report

Search the DGRC for GM12291

Clone and Library Details

Library:GM
Tissue Source:Drosophila melanogaster ovary
Created by:Ling Hong
Date Registered:1997-11-24
Comments:Constructed using Stratagene ZAP-cDNA Synthesis kit. Oligo dT-primed and directionally cloned at EcoRI and XhoI in BlueScript SK(+/-)
Original Plate Number:122
Well:91
Vector:pOT2
Associated Gene/TranscriptTapdelta-RA
Protein status:GM12291.pep: gold
Preliminary Size:790
Sequenced Size:738

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9035 2001-01-01 Release 2 assignment
CG9035 2002-12-11 Blastp of sequenced clone
CG9035 2003-01-01 Sim4 clustering to Release 3
Tapdelta 2008-04-29 Release 5.5 accounting
Tapdelta 2008-08-15 Release 5.9 accounting
Tapdelta 2008-12-18 5.12 accounting

Clone Sequence Records

GM12291.complete Sequence

738 bp (738 high quality bases) assembled on 2002-12-11

GenBank Submission: AF160894

> GM12291.complete
GATAGCCGTAGAGTTCCGCCTATTCCATTGATTACTAAATAAAAACCACC
TCATAACTTGATCAAGATGTCCCGTCAACTGTTCGCCATTTGCCTGATTG
CCGCCGTTTGTGCGTCCGGCGTCTACGGTAGCTGCAAGGCCACCGTGAGC
TCTTTCAGCACCCAGGATGCCACGATTCTGACCCAGCTGGCCCATGTGGG
CGAGTTCACGCTGCAGTGCAGCGGAGCCGCTCCCGCCAGCCTGTTCGCCG
AGTTCCCCTGCGGCAAGGTGGTGCCGGTGGCCAAGGTGGGCGACAACAAG
TACCAGGTGAGCTGGGTGGAGGATATCAAGCAGGGCAGCAGCGGCAATGT
TCAGGTGCGTCTCTTCGACGAGGATGGCTATGCCAATGTGCGCAAGGCCC
AGCGGGATGGCGACAAGGTTTCATCGGTGAAGTCGCTGCTCGACATTTCC
GTGCCCACCAAGGGTGCCTACAAGGGTCCCTGGATCAAGGCTGAGCTTTT
GGCCGCCTTCTTGGTCGGCGGATTCGCATACTTCGCCTTCACCACCAAGG
GCAAGGTGCAGTCCTAAGTAGAGGATGCCTTCGTCATCGAGATTTTGAAT
GAAATTCATTCGCACTAAAGTCATGTACCATCAAATTGCCGGGTCCCAGA
GATTTTTCCACATTTTGTACACCTAAGCATCGGATCACCCGCCGCTCCAA
AATAAACTGATTGAAAGACCAAAAAAAAAAAAAAAAAA

GM12291.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Tapdelta-RA 1049 Tapdelta-RA 277..998 1..722 3595 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7257750..7258165 720..305 2065 99.8 Minus
chr2R 21145070 chr2R 7258217..7258528 312..1 1530 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:21:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:52:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11370298..11370715 722..305 2075 99.8 Minus
2R 25286936 2R 11370767..11371078 312..1 1560 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:05:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11371497..11371914 722..305 2075 99.7 Minus
2R 25260384 2R 11371966..11372277 312..1 1560 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:52:16 has no hits.

GM12291.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:53:25 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7257750..7258163 307..720 99 <- Minus
chr2R 7258223..7258528 1..306 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:07:08 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 1..501 67..567 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:00:15 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 1..501 67..567 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:02:29 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 1..501 67..567 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:50:50 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 1..501 67..567 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:20:29 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 1..501 67..567 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:17:26 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 93..812 1..720 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:00:15 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 93..812 1..720 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:02:29 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 86..805 1..720 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:50:50 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 93..812 1..720 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:20:29 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
Tapdelta-RA 86..805 1..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:53:25 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11370300..11370713 307..720 99 <- Minus
2R 11370773..11371078 1..306 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:53:25 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11370300..11370713 307..720 99 <- Minus
2R 11370773..11371078 1..306 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:53:25 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11370300..11370713 307..720 99 <- Minus
2R 11370773..11371078 1..306 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:02:29 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7257805..7258218 307..720 99 <- Minus
arm_2R 7258278..7258583 1..306 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:22:35 Download gff for GM12291.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11371972..11372277 1..306 100   Minus
2R 11371499..11371912 307..720 99 <- Minus

GM12291.pep Sequence

Translation from 66 to 566

> GM12291.pep
MSRQLFAICLIAAVCASGVYGSCKATVSSFSTQDATILTQLAHVGEFTLQ
CSGAAPASLFAEFPCGKVVPVAKVGDNKYQVSWVEDIKQGSSGNVQVRLF
DEDGYANVRKAQRDGDKVSSVKSLLDISVPTKGAYKGPWIKAELLAAFLV
GGFAYFAFTTKGKVQS*

GM12291.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12398-PA 166 GF12398-PA 1..166 1..166 840 95.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22653-PA 166 GG22653-PA 1..166 1..166 859 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20510-PA 166 GH20510-PA 1..166 1..166 765 86.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Tapdelta-PB 166 CG9035-PB 1..166 1..166 849 100 Plus
Tapdelta-PA 166 CG9035-PA 1..166 1..166 849 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21056-PA 166 GI21056-PA 1..166 1..166 741 84.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10399-PA 166 GL10399-PA 1..166 1..166 771 89.2 Plus
Dper\GL19685-PA 86 GL19685-PA 1..86 81..166 424 94.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21495-PA 166 GA21495-PA 1..166 1..166 776 89.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20435-PA 166 GM20435-PA 1..166 1..166 865 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25906-PA 166 GD25906-PA 1..166 1..166 865 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21979-PA 166 GJ21979-PA 1..166 1..166 776 88 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23102-PA 168 GK23102-PA 1..168 1..166 577 64.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Tapdelta-PA 166 GE13527-PA 1..166 1..166 859 98.8 Plus

GM12291.hyp Sequence

Translation from 66 to 566

> GM12291.hyp
MSRQLFAICLIAAVCASGVYGSCKATVSSFSTQDATILTQLAHVGEFTLQ
CSGAAPASLFAEFPCGKVVPVAKVGDNKYQVSWVEDIKQGSSGNVQVRLF
DEDGYANVRKAQRDGDKVSSVKSLLDISVPTKGAYKGPWIKAELLAAFLV
GGFAYFAFTTKGKVQS*

GM12291.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 10:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
Tapdelta-PB 166 CG9035-PB 1..166 1..166 849 100 Plus
Tapdelta-PA 166 CG9035-PA 1..166 1..166 849 100 Plus